Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 UPK3BP1-201ENST00000428678 509 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 VENTXP5-201ENST00000523979 775 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 AC116407.4-201ENST00000623319 1061 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 MTMR9LP-203ENST00000426597 1545 ntBASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
SMIM28A0A1B0GU29 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AC079602.3-201ENST00000623931 403 ntBASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 Z98044.1-201ENST00000632503 1764 ntBASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SMIM28A0A1B0GU29 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 AC010240.3-201ENST00000607688 395 ntBASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SMIM28A0A1B0GU29 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 AC083906.6-201ENST00000641366 219 ntBASIC20.08■□□□□ 0.81
SMIM28A0A1B0GU29 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms