Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC32.44■■■□□ 2.78
USP42Q9H9J4 ABCB10P1-201ENST00000614297 2181 ntBASIC32.43■■■□□ 2.78
USP42Q9H9J4 RARRES2P1-201ENST00000474487 481 ntBASIC32.43■■■□□ 2.78
USP42Q9H9J4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP42Q9H9J4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC32.42■■■□□ 2.78
USP42Q9H9J4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
USP42Q9H9J4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-210ENST00000612854 801 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
USP42Q9H9J4 MED25-214ENST00000622402 642 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.41■■■□□ 2.78
USP42Q9H9J4 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
USP42Q9H9J4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
USP42Q9H9J4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.4■■■□□ 2.78
USP42Q9H9J4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
USP42Q9H9J4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP42Q9H9J4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP42Q9H9J4 AL157400.5-201ENST00000507624 621 ntBASIC32.38■■■□□ 2.77
USP42Q9H9J4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC32.38■■■□□ 2.77
USP42Q9H9J4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP42Q9H9J4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
USP42Q9H9J4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP42Q9H9J4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP42Q9H9J4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC32.35■■■□□ 2.77
USP42Q9H9J4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
USP42Q9H9J4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP42Q9H9J4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
USP42Q9H9J4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.33■■■□□ 2.77
USP42Q9H9J4 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC32.33■■■□□ 2.77
USP42Q9H9J4 AC126177.7-201ENST00000547904 679 ntBASIC32.32■■■□□ 2.76
USP42Q9H9J4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC32.32■■■□□ 2.76
USP42Q9H9J4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
USP42Q9H9J4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC32.31■■■□□ 2.76
USP42Q9H9J4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC32.31■■■□□ 2.76
USP42Q9H9J4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.3■■■□□ 2.76
USP42Q9H9J4 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC32.3■■■□□ 2.76
USP42Q9H9J4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
USP42Q9H9J4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
USP42Q9H9J4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
USP42Q9H9J4 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
USP42Q9H9J4 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC32.27■■■□□ 2.76
USP42Q9H9J4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
USP42Q9H9J4 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
USP42Q9H9J4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
USP42Q9H9J4 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC32.26■■■□□ 2.75
USP42Q9H9J4 AC129492.7-201ENST00000622992 756 ntBASIC32.26■■■□□ 2.75
USP42Q9H9J4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
USP42Q9H9J4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
USP42Q9H9J4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC32.25■■■□□ 2.75
USP42Q9H9J4 AC007029.1-201ENST00000604183 313 ntBASIC32.25■■■□□ 2.75
USP42Q9H9J4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
USP42Q9H9J4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
USP42Q9H9J4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP42Q9H9J4 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
USP42Q9H9J4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC32.23■■■□□ 2.75
USP42Q9H9J4 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
USP42Q9H9J4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
USP42Q9H9J4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC32.19■■■□□ 2.74
USP42Q9H9J4 AL592293.1-201ENST00000502889 1188 ntBASIC32.19■■■□□ 2.74
USP42Q9H9J4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC32.19■■■□□ 2.74
USP42Q9H9J4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USP42Q9H9J4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
USP42Q9H9J4 AC009831.1-201ENST00000580420 1582 ntBASIC32.18■■■□□ 2.74
USP42Q9H9J4 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC32.18■■■□□ 2.74
USP42Q9H9J4 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC32.18■■■□□ 2.74
USP42Q9H9J4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP42Q9H9J4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC32.17■■■□□ 2.74
USP42Q9H9J4 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.17■■■□□ 2.74
USP42Q9H9J4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
USP42Q9H9J4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP42Q9H9J4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
USP42Q9H9J4 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
USP42Q9H9J4 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
USP42Q9H9J4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC32.15■■■□□ 2.74
USP42Q9H9J4 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP42Q9H9J4 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC32.14■■■□□ 2.74
USP42Q9H9J4 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
USP42Q9H9J4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms