Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.87■■■□□ 2.37
RNF41Q9H4P4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
RNF41Q9H4P4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 CHST11-203ENST00000547956 936 ntTSL 2 BASIC29.85■■■□□ 2.37
RNF41Q9H4P4 AC018358.1-201ENST00000631079 1402 ntBASIC29.85■■■□□ 2.37
RNF41Q9H4P4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.84■■■□□ 2.37
RNF41Q9H4P4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.84■■■□□ 2.37
RNF41Q9H4P4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RNF41Q9H4P4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
RNF41Q9H4P4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.84■■■□□ 2.37
RNF41Q9H4P4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.83■■■□□ 2.37
RNF41Q9H4P4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.83■■■□□ 2.37
RNF41Q9H4P4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC29.82■■■□□ 2.36
RNF41Q9H4P4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.82■■■□□ 2.36
RNF41Q9H4P4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RNF41Q9H4P4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RNF41Q9H4P4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.81■■■□□ 2.36
RNF41Q9H4P4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
RNF41Q9H4P4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
RNF41Q9H4P4 AC142086.6-201ENST00000621154 1765 ntBASIC29.8■■■□□ 2.36
RNF41Q9H4P4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
RNF41Q9H4P4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RNF41Q9H4P4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RNF41Q9H4P4 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
RNF41Q9H4P4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
RNF41Q9H4P4 MIR219A2-201ENST00000608502 1504 ntBASIC29.78■■■□□ 2.36
RNF41Q9H4P4 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
RNF41Q9H4P4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RNF41Q9H4P4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
RNF41Q9H4P4 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
RNF41Q9H4P4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
RNF41Q9H4P4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
RNF41Q9H4P4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RNF41Q9H4P4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RNF41Q9H4P4 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RNF41Q9H4P4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.74■■■□□ 2.35
RNF41Q9H4P4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RNF41Q9H4P4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
RNF41Q9H4P4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
RNF41Q9H4P4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.73■■■□□ 2.35
RNF41Q9H4P4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC29.73■■■□□ 2.35
RNF41Q9H4P4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
RNF41Q9H4P4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.72■■■□□ 2.35
RNF41Q9H4P4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC29.71■■■□□ 2.35
RNF41Q9H4P4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
RNF41Q9H4P4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.7■■■□□ 2.35
RNF41Q9H4P4 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
RNF41Q9H4P4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
RNF41Q9H4P4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.7■■■□□ 2.35
RNF41Q9H4P4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
RNF41Q9H4P4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.69■■■□□ 2.34
RNF41Q9H4P4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.68■■■□□ 2.34
RNF41Q9H4P4 LINC01003-201ENST00000564834 1764 ntBASIC29.68■■■□□ 2.34
RNF41Q9H4P4 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC29.68■■■□□ 2.34
RNF41Q9H4P4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.68■■■□□ 2.34
RNF41Q9H4P4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
RNF41Q9H4P4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
RNF41Q9H4P4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RNF41Q9H4P4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RNF41Q9H4P4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
RNF41Q9H4P4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC29.66■■■□□ 2.34
RNF41Q9H4P4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.66■■■□□ 2.34
RNF41Q9H4P4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
RNF41Q9H4P4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
RNF41Q9H4P4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.64■■■□□ 2.34
RNF41Q9H4P4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.33
RNF41Q9H4P4 BX255925.1-201ENST00000566954 1854 ntBASIC29.63■■■□□ 2.33
RNF41Q9H4P4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
RNF41Q9H4P4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.63■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms