Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
UBQLN3Q9H347 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.26■■□□□ 1.31
UBQLN3Q9H347 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
UBQLN3Q9H347 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.24■■□□□ 1.31
UBQLN3Q9H347 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
UBQLN3Q9H347 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
UBQLN3Q9H347 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.23■■□□□ 1.31
UBQLN3Q9H347 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
UBQLN3Q9H347 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
UBQLN3Q9H347 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
UBQLN3Q9H347 BX255925.1-201ENST00000566954 1854 ntBASIC23.22■■□□□ 1.31
UBQLN3Q9H347 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
UBQLN3Q9H347 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
UBQLN3Q9H347 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
UBQLN3Q9H347 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
UBQLN3Q9H347 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
UBQLN3Q9H347 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
UBQLN3Q9H347 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
UBQLN3Q9H347 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
UBQLN3Q9H347 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UBQLN3Q9H347 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
UBQLN3Q9H347 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 AC110285.7-201ENST00000624417 1536 ntBASIC23.19■■□□□ 1.3
UBQLN3Q9H347 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
UBQLN3Q9H347 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
UBQLN3Q9H347 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
UBQLN3Q9H347 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
UBQLN3Q9H347 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
UBQLN3Q9H347 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
UBQLN3Q9H347 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
UBQLN3Q9H347 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
UBQLN3Q9H347 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
UBQLN3Q9H347 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.14■■□□□ 1.29
UBQLN3Q9H347 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
UBQLN3Q9H347 AC100797.4-201ENST00000631653 1827 ntBASIC23.14■■□□□ 1.29
UBQLN3Q9H347 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
UBQLN3Q9H347 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.14■■□□□ 1.29
UBQLN3Q9H347 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 AC008813.1-201ENST00000536597 885 ntBASIC23.13■■□□□ 1.29
UBQLN3Q9H347 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
UBQLN3Q9H347 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
UBQLN3Q9H347 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
UBQLN3Q9H347 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.11■■□□□ 1.29
UBQLN3Q9H347 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.11■■□□□ 1.29
UBQLN3Q9H347 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
UBQLN3Q9H347 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 LINC01003-201ENST00000564834 1764 ntBASIC23.1■■□□□ 1.29
UBQLN3Q9H347 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.1■■□□□ 1.29
UBQLN3Q9H347 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms