Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDH12P55289 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDH12P55289 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDH12P55289 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CDH12P55289 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDH12P55289 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.31■■□□□ 1.32
CDH12P55289 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDH12P55289 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.31■■□□□ 1.32
CDH12P55289 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH12P55289 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDH12P55289 AC135983.2-203ENST00000454486 1613 ntBASIC23.3■■□□□ 1.32
CDH12P55289 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.3■■□□□ 1.32
CDH12P55289 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.3■■□□□ 1.32
CDH12P55289 AL449106.1-201ENST00000608517 1980 ntBASIC23.3■■□□□ 1.32
CDH12P55289 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.3■■□□□ 1.32
CDH12P55289 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
CDH12P55289 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.29■■□□□ 1.32
CDH12P55289 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDH12P55289 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.28■■□□□ 1.32
CDH12P55289 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDH12P55289 AC135731.1-201ENST00000569415 2548 ntBASIC23.28■■□□□ 1.32
CDH12P55289 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.26■■□□□ 1.31
CDH12P55289 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.26■■□□□ 1.31
CDH12P55289 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDH12P55289 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDH12P55289 WHAMMP2-203ENST00000563942 1603 ntBASIC23.26■■□□□ 1.31
CDH12P55289 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDH12P55289 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDH12P55289 AC087741.3-201ENST00000624270 1347 ntBASIC23.25■■□□□ 1.31
CDH12P55289 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDH12P55289 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDH12P55289 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDH12P55289 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDH12P55289 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.24■■□□□ 1.31
CDH12P55289 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDH12P55289 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.24■■□□□ 1.31
CDH12P55289 LINC00273-201ENST00000539813 1452 ntBASIC23.24■■□□□ 1.31
CDH12P55289 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDH12P55289 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDH12P55289 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
CDH12P55289 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDH12P55289 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDH12P55289 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.23■■□□□ 1.31
CDH12P55289 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
CDH12P55289 AC018358.1-201ENST00000631079 1402 ntBASIC23.23■■□□□ 1.31
CDH12P55289 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.23■■□□□ 1.31
CDH12P55289 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDH12P55289 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CDH12P55289 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDH12P55289 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDH12P55289 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CDH12P55289 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDH12P55289 AL162393.1-201ENST00000437852 946 ntBASIC23.22■■□□□ 1.31
CDH12P55289 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.22■■□□□ 1.31
CDH12P55289 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CDH12P55289 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
CDH12P55289 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDH12P55289 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CDH12P55289 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDH12P55289 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDH12P55289 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CDH12P55289 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CDH12P55289 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CDH12P55289 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CDH12P55289 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.19■■□□□ 1.3
CDH12P55289 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CDH12P55289 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDH12P55289 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CDH12P55289 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CDH12P55289 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDH12P55289 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CDH12P55289 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.18■■□□□ 1.3
CDH12P55289 AC091060.1-201ENST00000623524 1766 ntBASIC23.18■■□□□ 1.3
CDH12P55289 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.18■■□□□ 1.3
CDH12P55289 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.18■■□□□ 1.3
CDH12P55289 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.17■■□□□ 1.3
CDH12P55289 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDH12P55289 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CDH12P55289 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CDH12P55289 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.17■■□□□ 1.3
CDH12P55289 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.16■■□□□ 1.3
CDH12P55289 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDH12P55289 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CDH12P55289 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CDH12P55289 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CDH12P55289 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CDH12P55289 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.14■■□□□ 1.29
CDH12P55289 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
CDH12P55289 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDH12P55289 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CDH12P55289 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CDH12P55289 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CDH12P55289 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.13■■□□□ 1.29
CDH12P55289 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.13■■□□□ 1.29
CDH12P55289 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.13■■□□□ 1.29
CDH12P55289 AC044849.2-201ENST00000606596 710 ntBASIC23.13■■□□□ 1.29
CDH12P55289 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.13■■□□□ 1.29
CDH12P55289 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.12■■□□□ 1.29
CDH12P55289 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
CDH12P55289 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms