Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HADHAP40939 ABHD17AP4-201ENST00000411545 909 ntBASIC25.39■■□□□ 1.66
HADHAP40939 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.39■■□□□ 1.66
HADHAP40939 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HADHAP40939 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.39■■□□□ 1.66
HADHAP40939 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.38■■□□□ 1.65
HADHAP40939 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
HADHAP40939 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HADHAP40939 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HADHAP40939 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HADHAP40939 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
HADHAP40939 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HADHAP40939 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
HADHAP40939 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HADHAP40939 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
HADHAP40939 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
HADHAP40939 AC110285.7-201ENST00000624417 1536 ntBASIC25.34■■□□□ 1.65
HADHAP40939 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.33■■□□□ 1.65
HADHAP40939 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.33■■□□□ 1.65
HADHAP40939 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
HADHAP40939 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.33■■□□□ 1.65
HADHAP40939 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
HADHAP40939 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.32■■□□□ 1.64
HADHAP40939 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.32■■□□□ 1.64
HADHAP40939 DUX4L11-201ENST00000611504 1267 ntBASIC25.32■■□□□ 1.64
HADHAP40939 DUX4L12-201ENST00000614593 1267 ntBASIC25.32■■□□□ 1.64
HADHAP40939 DUX4L14-201ENST00000621227 1267 ntBASIC25.32■■□□□ 1.64
HADHAP40939 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.32■■□□□ 1.64
HADHAP40939 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
HADHAP40939 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.32■■□□□ 1.64
HADHAP40939 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
HADHAP40939 DUX4L13-201ENST00000554103 1267 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L15-201ENST00000611059 1267 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L23-201ENST00000615195 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L24-201ENST00000617576 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L22-201ENST00000618238 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L20-201ENST00000619712 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L21-201ENST00000622058 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L10-201ENST00000622460 1267 ntBASIC25.31■■□□□ 1.64
HADHAP40939 DUX4L25-201ENST00000624915 1269 ntBASIC25.31■■□□□ 1.64
HADHAP40939 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.31■■□□□ 1.64
HADHAP40939 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
HADHAP40939 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.3■■□□□ 1.64
HADHAP40939 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
HADHAP40939 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HADHAP40939 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.3■■□□□ 1.64
HADHAP40939 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
HADHAP40939 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HADHAP40939 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.29■■□□□ 1.64
HADHAP40939 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HADHAP40939 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HADHAP40939 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
HADHAP40939 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
HADHAP40939 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HADHAP40939 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
HADHAP40939 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HADHAP40939 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
HADHAP40939 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
HADHAP40939 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HADHAP40939 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HADHAP40939 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.26■■□□□ 1.63
HADHAP40939 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HADHAP40939 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HADHAP40939 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.26■■□□□ 1.63
HADHAP40939 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HADHAP40939 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HADHAP40939 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.25■■□□□ 1.63
HADHAP40939 AC018358.1-201ENST00000631079 1402 ntBASIC25.25■■□□□ 1.63
HADHAP40939 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
HADHAP40939 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HADHAP40939 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
HADHAP40939 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
HADHAP40939 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HADHAP40939 MIR7108-201ENST00000614319 87 ntBASIC25.24■■□□□ 1.63
HADHAP40939 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
HADHAP40939 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HADHAP40939 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.23■■□□□ 1.63
HADHAP40939 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
HADHAP40939 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HADHAP40939 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HADHAP40939 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.22■■□□□ 1.63
HADHAP40939 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
HADHAP40939 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HADHAP40939 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HADHAP40939 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HADHAP40939 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
HADHAP40939 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
HADHAP40939 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.2■■□□□ 1.62
HADHAP40939 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.2■■□□□ 1.62
HADHAP40939 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
HADHAP40939 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HADHAP40939 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.19■■□□□ 1.62
HADHAP40939 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
HADHAP40939 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms