Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC24.64■■□□□ 1.54
CACNA1AO00555 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.64■■□□□ 1.53
CACNA1AO00555 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1AO00555 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.63■■□□□ 1.53
CACNA1AO00555 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1AO00555 AC026202.3-201ENST00000600805 1127 ntBASIC24.63■■□□□ 1.53
CACNA1AO00555 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
CACNA1AO00555 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
CACNA1AO00555 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1AO00555 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1AO00555 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1AO00555 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
CACNA1AO00555 AL139246.5-201ENST00000606645 996 ntBASIC24.62■■□□□ 1.53
CACNA1AO00555 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1AO00555 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC24.62■■□□□ 1.53
CACNA1AO00555 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
CACNA1AO00555 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.62■■□□□ 1.53
CACNA1AO00555 Z92544.1-202ENST00000571933 1220 ntBASIC24.62■■□□□ 1.53
CACNA1AO00555 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1AO00555 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1AO00555 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1AO00555 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1AO00555 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1AO00555 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.61■■□□□ 1.53
CACNA1AO00555 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.61■■□□□ 1.53
CACNA1AO00555 RAP2CP1-202ENST00000605179 643 ntBASIC24.6■■□□□ 1.53
CACNA1AO00555 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.6■■□□□ 1.53
CACNA1AO00555 PVT1_1.1-201ENST00000615125 194 ntBASIC24.6■■□□□ 1.53
CACNA1AO00555 AC139795.1-202ENST00000500444 432 ntBASIC24.58■■□□□ 1.53
CACNA1AO00555 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.58■■□□□ 1.53
CACNA1AO00555 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC24.58■■□□□ 1.53
CACNA1AO00555 AC239859.2-201ENST00000444165 318 ntBASIC24.58■■□□□ 1.52
CACNA1AO00555 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.52
CACNA1AO00555 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1AO00555 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.57■■□□□ 1.52
CACNA1AO00555 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.57■■□□□ 1.52
CACNA1AO00555 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1AO00555 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.57■■□□□ 1.52
CACNA1AO00555 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1AO00555 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CACNA1AO00555 AL031848.2-201ENST00000607670 837 ntBASIC24.57■■□□□ 1.52
CACNA1AO00555 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
CACNA1AO00555 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.57■■□□□ 1.52
CACNA1AO00555 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1AO00555 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CACNA1AO00555 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.55■■□□□ 1.52
CACNA1AO00555 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1AO00555 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1AO00555 AC104564.3-201ENST00000582367 638 ntBASIC24.54■■□□□ 1.52
CACNA1AO00555 AC026271.2-201ENST00000428091 497 ntBASIC24.54■■□□□ 1.52
CACNA1AO00555 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1AO00555 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.53■■□□□ 1.52
CACNA1AO00555 RARRES2P6-201ENST00000567333 442 ntBASIC24.53■■□□□ 1.52
CACNA1AO00555 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.52■■□□□ 1.52
CACNA1AO00555 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1AO00555 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1AO00555 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1AO00555 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1AO00555 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.51■■□□□ 1.51
CACNA1AO00555 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1AO00555 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC24.51■■□□□ 1.51
CACNA1AO00555 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1AO00555 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CACNA1AO00555 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1AO00555 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.49■■□□□ 1.51
CACNA1AO00555 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.49■■□□□ 1.51
CACNA1AO00555 AC126177.7-201ENST00000547904 679 ntBASIC24.49■■□□□ 1.51
CACNA1AO00555 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.49■■□□□ 1.51
CACNA1AO00555 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1AO00555 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1AO00555 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1AO00555 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1AO00555 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1AO00555 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1AO00555 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.46■■□□□ 1.51
CACNA1AO00555 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.46■■□□□ 1.51
CACNA1AO00555 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CACNA1AO00555 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CACNA1AO00555 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.45■■□□□ 1.51
CACNA1AO00555 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.45■■□□□ 1.5
CACNA1AO00555 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.45■■□□□ 1.5
CACNA1AO00555 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1AO00555 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.44■■□□□ 1.5
CACNA1AO00555 AC110285.7-201ENST00000624417 1536 ntBASIC24.44■■□□□ 1.5
CACNA1AO00555 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CACNA1AO00555 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.42■■□□□ 1.5
CACNA1AO00555 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CACNA1AO00555 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CACNA1AO00555 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.41■■□□□ 1.5
CACNA1AO00555 AC110285.6-201ENST00000617652 491 ntBASIC24.41■■□□□ 1.5
CACNA1AO00555 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CACNA1AO00555 WHAMMP2-203ENST00000563942 1603 ntBASIC24.41■■□□□ 1.5
CACNA1AO00555 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.4■■□□□ 1.5
CACNA1AO00555 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.39■■□□□ 1.5
CACNA1AO00555 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.39■■□□□ 1.5
CACNA1AO00555 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.39■■□□□ 1.5
CACNA1AO00555 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.39■■□□□ 1.5
CACNA1AO00555 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.39■■□□□ 1.5
CACNA1AO00555 AC005837.3-201ENST00000612163 286 ntBASIC24.39■■□□□ 1.5
CACNA1AO00555 AC120057.4-201ENST00000624722 1615 ntBASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms