RNA–Protein interactions for RNA: YOR069W

VPS5, Transcript of Nexin-1 homolog, yeastyeast

Gene VPS5, Length 2,028 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS5YOR069W SGS1P35187 1447 aa9.38□□□□□ -0.91
VPS5YOR069W SPA2P23201 1466 aaKnown RBP9.32□□□□□ -0.92
VPS5YOR069W SSN2P38931 1420 aa9.21□□□□□ -0.94
VPS5YOR069W INO80P53115 1489 aa9.04□□□□□ -0.96
VPS5YOR069W DRS1P32892 752 aaKnown RBP8.98□□□□□ -0.97
VPS5YOR069W SKI3P17883 1432 aaKnown RBP8.82□□□□□ -1
VPS5YOR069W TCB3Q03640 1545 aaKnown RBP8.75□□□□□ -1.01
VPS5YOR069W NOP2P40991 618 aaKnown RBP8.59□□□□□ -1.03
VPS5YOR069W TY1B-DR4Q07793 1604 aa8.55□□□□□ -1.04
VPS5YOR069W NSR1P27476 414 aaKnown RBP RIP-Chip data8.51□□□□□ -1.05not detected
VPS5YOR069W MMS22Q06164 1454 aa8.51□□□□□ -1.05
VPS5YOR069W HSL1P34244 1518 aa8.51□□□□□ -1.05
VPS5YOR069W CHD1P32657 1468 aa8.51□□□□□ -1.05
VPS5YOR069W SPT6P23615 1451 aaKnown RBP8.47□□□□□ -1.05
VPS5YOR069W XRN1P22147 1528 aaKnown RBP8.41□□□□□ -1.06
VPS5YOR069W HIR3P47171 1648 aa8.37□□□□□ -1.07
VPS5YOR069W RSE1Q04693 1361 aaKnown RBP8.35□□□□□ -1.07
VPS5YOR069W UFD4P33202 1483 aa8.32□□□□□ -1.08
VPS5YOR069W REV3P14284 1504 aa8.31□□□□□ -1.08
VPS5YOR069W THO2P53552 1597 aaKnown RBP8.3□□□□□ -1.08
VPS5YOR069W BFR2Q06631 534 aaKnown RBP8.3□□□□□ -1.08
VPS5YOR069W SIN3P22579 1536 aa8.28□□□□□ -1.08
VPS5YOR069W SAS10Q12136 610 aaPredicted RBP8.27□□□□□ -1.09
VPS5YOR069W TAF2P23255 1407 aa8.26□□□□□ -1.09
VPS5YOR069W TRM732Q03496 1420 aa8.25□□□□□ -1.09
VPS5YOR069W SSK2P53599 1579 aa8.24□□□□□ -1.09
VPS5YOR069W IKI3Q06706 1349 aaKnown RBP8.23□□□□□ -1.09
VPS5YOR069W STU1P38198 1513 aa8.22□□□□□ -1.09
VPS5YOR069W YTA7P40340 1379 aa8.21□□□□□ -1.1
VPS5YOR069W SWR1Q05471 1514 aa8.19□□□□□ -1.1
VPS5YOR069W SPP41P38904 1435 aa8.19□□□□□ -1.1
VPS5YOR069W MYO2P19524 1574 aaKnown RBP8.18□□□□□ -1.1
VPS5YOR069W ENP1P38333 483 aaKnown RBP8.17□□□□□ -1.1
VPS5YOR069W POL1P13382 1468 aa8.17□□□□□ -1.1
VPS5YOR069W MON2P48563 1636 aaPredicted RBP8.17□□□□□ -1.1
VPS5YOR069W ESP1Q03018 1630 aa8.14□□□□□ -1.11
VPS5YOR069W BPT1P14772 1559 aa8.13□□□□□ -1.11
VPS5YOR069W POL5P39985 1022 aaKnown RBP8.11□□□□□ -1.11
VPS5YOR069W SCC2Q04002 1493 aa8.1□□□□□ -1.11
VPS5YOR069W SSM4P40318 1319 aa8.09□□□□□ -1.11
VPS5YOR069W TAF7Q05021 590 aa8.05□□□□□ -1.12
VPS5YOR069W ECM5Q03214 1411 aa8.04□□□□□ -1.12
VPS5YOR069W NUP170P38181 1502 aa8.04□□□□□ -1.12
VPS5YOR069W DNA2P38859 1522 aa8.02□□□□□ -1.13
VPS5YOR069W MYO4P32492 1471 aa8.02□□□□□ -1.13
VPS5YOR069W SPT7P35177 1332 aa8.02□□□□□ -1.13
VPS5YOR069W YPK9Q12697 1472 aa8.02□□□□□ -1.13
VPS5YOR069W STH1P32597 1359 aa8.02□□□□□ -1.13
VPS5YOR069W YOR1P53049 1477 aa8.01□□□□□ -1.13
VPS5YOR069W BUD4P47136 1447 aa8.01□□□□□ -1.13
VPS5YOR069W SEC3P33332 1336 aaKnown RBP8□□□□□ -1.13
VPS5YOR069W RKR1Q04781 1562 aa7.99□□□□□ -1.13
VPS5YOR069W RTT106P40161 455 aa7.98□□□□□ -1.13
VPS5YOR069W SMC4Q12267 1418 aa7.97□□□□□ -1.13
VPS5YOR069W SNQ2P32568 1501 aaKnown RBP7.96□□□□□ -1.14
VPS5YOR069W PAN1P32521 1480 aa7.96□□□□□ -1.14
VPS5YOR069W ATG2P53855 1592 aa7.95□□□□□ -1.14
VPS5YOR069W IFH1P39520 1085 aa7.95□□□□□ -1.14
VPS5YOR069W PRS1P32895 427 aaKnown RBP7.91□□□□□ -1.14
VPS5YOR069W CAB3P36076 571 aa7.91□□□□□ -1.14
VPS5YOR069W TSC11P40061 1430 aa7.9□□□□□ -1.15
VPS5YOR069W GEA1P47102 1408 aaPredicted RBP7.9□□□□□ -1.15
VPS5YOR069W MLP2P40457 1679 aa7.86□□□□□ -1.15
VPS5YOR069W PDR10P51533 1564 aa7.86□□□□□ -1.15
VPS5YOR069W TOP2P06786 1428 aaKnown RBP7.86□□□□□ -1.15
VPS5YOR069W EBP2P36049 427 aaKnown RBP7.86□□□□□ -1.15
VPS5YOR069W PDR15Q04182 1529 aaKnown RBP7.86□□□□□ -1.15
VPS5YOR069W RPO31P04051 1460 aa7.86□□□□□ -1.15
VPS5YOR069W YCF1P39109 1515 aaKnown RBP7.85□□□□□ -1.15
VPS5YOR069W YPR148CQ06523 435 aa7.84□□□□□ -1.15
VPS5YOR069W KOG1P38873 1557 aa7.83□□□□□ -1.16
VPS5YOR069W LEU3P08638 886 aa7.83□□□□□ -1.16
VPS5YOR069W TFA1P36100 482 aa7.81□□□□□ -1.16
VPS5YOR069W PEP1P32319 1579 aa7.8□□□□□ -1.16
VPS5YOR069W MDS3P53094 1487 aa7.77□□□□□ -1.17
VPS5YOR069W ULS1Q08562 1619 aa7.77□□□□□ -1.17
VPS5YOR069W VPS15P22219 1454 aa7.76□□□□□ -1.17
VPS5YOR069W PSD2P53037 1138 aaKnown RBP7.76□□□□□ -1.17
VPS5YOR069W SRB8P25648 1427 aa7.75□□□□□ -1.17
VPS5YOR069W TY3B-GQ99315 1547 aa7.75□□□□□ -1.17
VPS5YOR069W TY1B-DR3Q99231 1755 aa7.74□□□□□ -1.17
VPS5YOR069W YLR419WQ06698 1435 aaKnown RBP7.72□□□□□ -1.17
VPS5YOR069W TY2B-LR1P0C2J3 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-FP0CX63 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-GR2P0CX64 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-CP25384 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-DR2Q03494 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY1B-DR1Q03855 1755 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-DR3Q07791 1770 aaKnown RBP7.72□□□□□ -1.17
VPS5YOR069W TY2B-OR1Q12113 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-DR1Q12472 1770 aa7.72□□□□□ -1.17
VPS5YOR069W TY2B-OR2Q12501 1770 aa7.72□□□□□ -1.17
VPS5YOR069W CFT1Q06632 1357 aaKnown RBP7.71□□□□□ -1.17
VPS5YOR069W DNF1P32660 1571 aa7.7□□□□□ -1.18
VPS5YOR069W NUP159P40477 1460 aa7.7□□□□□ -1.18
VPS5YOR069W MHP1P43638 1398 aa7.69□□□□□ -1.18
VPS5YOR069W IME2P32581 645 aa7.68□□□□□ -1.18
VPS5YOR069W TY2B-BQ12491 1770 aa7.67□□□□□ -1.18
VPS5YOR069W CLC1P17891 233 aa7.66□□□□□ -1.18
VPS5YOR069W ORC1P54784 914 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms