RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeastyeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RAT1YOR048C SGS1P35187 1447 aa8.84□□□□□ -0.99
RAT1YOR048C SSN2P38931 1420 aa8.56□□□□□ -1.04
RAT1YOR048C SPA2P23201 1466 aaKnown RBP8.43□□□□□ -1.06
RAT1YOR048C DRS1P32892 752 aaKnown RBP8.4□□□□□ -1.07
RAT1YOR048C INO80P53115 1489 aa8.28□□□□□ -1.08
RAT1YOR048C TCB3Q03640 1545 aaKnown RBP8.16□□□□□ -1.1
RAT1YOR048C HSL1P34244 1518 aa8.1□□□□□ -1.11
RAT1YOR048C RSE1Q04693 1361 aaKnown RBP8.08□□□□□ -1.12
RAT1YOR048C TY1B-DR4Q07793 1604 aa8.08□□□□□ -1.12
RAT1YOR048C TAF2P23255 1407 aa8.08□□□□□ -1.12
RAT1YOR048C SPT6P23615 1451 aaKnown RBP8.08□□□□□ -1.12
RAT1YOR048C XRN1P22147 1528 aaKnown RBP8.06□□□□□ -1.12
RAT1YOR048C HIR3P47171 1648 aa7.98□□□□□ -1.13
RAT1YOR048C SAS10Q12136 610 aaPredicted RBP7.93□□□□□ -1.14
RAT1YOR048C SWR1Q05471 1514 aa7.89□□□□□ -1.15
RAT1YOR048C REV3P14284 1504 aa7.86□□□□□ -1.15
RAT1YOR048C MON2P48563 1636 aaPredicted RBP7.81□□□□□ -1.16
RAT1YOR048C MMS22Q06164 1454 aa7.78□□□□□ -1.16
RAT1YOR048C SKI3P17883 1432 aaKnown RBP7.75□□□□□ -1.17
RAT1YOR048C STU1P38198 1513 aa7.72□□□□□ -1.17
RAT1YOR048C BPT1P14772 1559 aa7.72□□□□□ -1.17
RAT1YOR048C SSK2P53599 1579 aa7.71□□□□□ -1.17
RAT1YOR048C THO2P53552 1597 aaKnown RBP7.69□□□□□ -1.18
RAT1YOR048C NSR1P27476 414 aaKnown RBP RIP-Chip data7.68□□□□□ -1.18not detected
RAT1YOR048C ECM5Q03214 1411 aa7.66□□□□□ -1.18
RAT1YOR048C ESP1Q03018 1630 aa7.65□□□□□ -1.18
RAT1YOR048C SIN3P22579 1536 aa7.64□□□□□ -1.19
RAT1YOR048C DNA2P38859 1522 aa7.64□□□□□ -1.19
RAT1YOR048C IFH1P39520 1085 aa7.63□□□□□ -1.19
RAT1YOR048C TRM732Q03496 1420 aa7.61□□□□□ -1.19
RAT1YOR048C SCC2Q04002 1493 aa7.6□□□□□ -1.19
RAT1YOR048C MYO2P19524 1574 aaKnown RBP7.59□□□□□ -1.19
RAT1YOR048C RQC2Q12532 1038 aaKnown RBP7.58□□□□□ -1.2
RAT1YOR048C POL1P13382 1468 aa7.57□□□□□ -1.2
RAT1YOR048C CHD1P32657 1468 aa7.56□□□□□ -1.2
RAT1YOR048C BUD4P47136 1447 aa7.56□□□□□ -1.2
RAT1YOR048C SSM4P40318 1319 aa7.56□□□□□ -1.2
RAT1YOR048C ATG2P53855 1592 aa7.55□□□□□ -1.2
RAT1YOR048C YTA7P40340 1379 aa7.52□□□□□ -1.21
RAT1YOR048C RKR1Q04781 1562 aa7.51□□□□□ -1.21
RAT1YOR048C UFD4P33202 1483 aa7.51□□□□□ -1.21
RAT1YOR048C STH1P32597 1359 aa7.51□□□□□ -1.21
RAT1YOR048C YPK9Q12697 1472 aa7.49□□□□□ -1.21
RAT1YOR048C IKI3Q06706 1349 aaKnown RBP7.48□□□□□ -1.21
RAT1YOR048C RTT106P40161 455 aa7.47□□□□□ -1.21
RAT1YOR048C NOP2P40991 618 aaKnown RBP7.47□□□□□ -1.21
RAT1YOR048C YOR1P53049 1477 aa7.45□□□□□ -1.22
RAT1YOR048C KOG1P38873 1557 aa7.45□□□□□ -1.22
RAT1YOR048C LEU3P08638 886 aa7.43□□□□□ -1.22
RAT1YOR048C MDS3P53094 1487 aa7.42□□□□□ -1.22
RAT1YOR048C PEP1P32319 1579 aa7.42□□□□□ -1.22
RAT1YOR048C SNQ2P32568 1501 aaKnown RBP7.41□□□□□ -1.22
RAT1YOR048C ORC1P54784 914 aaPredicted RBP7.4□□□□□ -1.23
RAT1YOR048C TOP2P06786 1428 aaKnown RBP7.38□□□□□ -1.23
RAT1YOR048C PDR15Q04182 1529 aaKnown RBP7.37□□□□□ -1.23
RAT1YOR048C RPO31P04051 1460 aa7.37□□□□□ -1.23
RAT1YOR048C GEA1P47102 1408 aaPredicted RBP7.36□□□□□ -1.23
RAT1YOR048C SPT7P35177 1332 aa7.36□□□□□ -1.23
RAT1YOR048C YCF1P39109 1515 aaKnown RBP7.35□□□□□ -1.23
RAT1YOR048C TY2B-LR1P0C2J3 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-FP0CX63 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-GR2P0CX64 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-CP25384 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-DR2Q03494 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY1B-DR1Q03855 1755 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-DR3Q07791 1770 aaKnown RBP7.35□□□□□ -1.23
RAT1YOR048C TY2B-OR1Q12113 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-DR1Q12472 1770 aa7.35□□□□□ -1.23
RAT1YOR048C TY2B-OR2Q12501 1770 aa7.35□□□□□ -1.23
RAT1YOR048C MYO4P32492 1471 aa7.34□□□□□ -1.23
RAT1YOR048C TY1B-DR3Q99231 1755 aa7.34□□□□□ -1.24
RAT1YOR048C POL5P39985 1022 aaKnown RBP7.33□□□□□ -1.24
RAT1YOR048C TSC11P40061 1430 aa7.32□□□□□ -1.24
RAT1YOR048C MLP2P40457 1679 aa7.32□□□□□ -1.24
RAT1YOR048C SMC4Q12267 1418 aa7.32□□□□□ -1.24
RAT1YOR048C TAF7Q05021 590 aa7.31□□□□□ -1.24
RAT1YOR048C PAN1P32521 1480 aa7.3□□□□□ -1.24
RAT1YOR048C TY2B-BQ12491 1770 aa7.29□□□□□ -1.24
RAT1YOR048C ULS1Q08562 1619 aa7.27□□□□□ -1.25
RAT1YOR048C SPP41P38904 1435 aa7.27□□□□□ -1.25
RAT1YOR048C TY3B-GQ99315 1547 aa7.27□□□□□ -1.25
RAT1YOR048C CKB1P43639 278 aa7.26□□□□□ -1.25
RAT1YOR048C FUN12P39730 1002 aaKnown RBP7.25□□□□□ -1.25
RAT1YOR048C VPS15P22219 1454 aa7.23□□□□□ -1.25
RAT1YOR048C NUP170P38181 1502 aa7.22□□□□□ -1.25
RAT1YOR048C PSD2P53037 1138 aaKnown RBP7.22□□□□□ -1.25
RAT1YOR048C ENP1P38333 483 aaKnown RBP7.21□□□□□ -1.26
RAT1YOR048C MTC1P47018 478 aaKnown RBP7.21□□□□□ -1.26
RAT1YOR048C PDR10P51533 1564 aa7.19□□□□□ -1.26
RAT1YOR048C TY1B-HO13535 1793 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-DR5P0C2I2 1755 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-DR6P0C2I3 1755 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-LR2P0C2I5 1755 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-LR3P0C2I6 1755 aaKnown RBP7.18□□□□□ -1.26
RAT1YOR048C TY1B-PR1P0C2I9 1755 aaKnown RBP7.18□□□□□ -1.26
RAT1YOR048C TY1B-PR2P0C2J0 1756 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-PR3P0C2J1 1755 aaKnown RBP7.18□□□□□ -1.26
RAT1YOR048C TY1B-JR1P47098 1755 aa7.18□□□□□ -1.26
RAT1YOR048C TY1B-ML2Q03434 1755 aaKnown RBP7.18□□□□□ -1.26
RAT1YOR048C TY1B-ER1Q03612 1755 aa7.18□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms