RNA–Protein interactions for RNA: YNL079C

TPM1, Transcript of Major isoform of tropomyosin, yeast

Gene TPM1, Length 600 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM1	YNL079C	DRS1	P32892	752 aa	Known RBP	11.64	□□□□□ -0.55
TPM1	YNL079C	MTC1	P47018	478 aa	Known RBP	11.6	□□□□□ -0.55
TPM1	YNL079C	BFR2	Q06631	534 aa	Known RBP	10.06	□□□□□ -0.8
TPM1	YNL079C	DIP2	Q12220	943 aa	Predicted RBP	9.93	□□□□□ -0.82
TPM1	YNL079C	AVT3	P36062	692 aa		9.79	□□□□□ -0.84
TPM1	YNL079C	FAP1	P53971	965 aa		9.51	□□□□□ -0.89
TPM1	YNL079C	TFA1	P36100	482 aa		9.48	□□□□□ -0.89
TPM1	YNL079C	ISW2	Q08773	1120 aa		9.43	□□□□□ -0.9
TPM1	YNL079C	RSE1	Q04693	1361 aa	Known RBP	9.36	□□□□□ -0.91
TPM1	YNL079C	PRI1	P10363	409 aa		9.33	□□□□□ -0.92
TPM1	YNL079C	RPG1	P38249	964 aa	Known RBP	9.31	□□□□□ -0.92
TPM1	YNL079C	AAD16	Q02895	342 aa		9.17	□□□□□ -0.94
TPM1	YNL079C	RPL17A	P05740	184 aa	Known RBP	9	□□□□□ -0.97
TPM1	YNL079C	RPL17B	P46990	184 aa	Known RBP	9	□□□□□ -0.97
TPM1	YNL079C	PRY3	P47033	881 aa		8.9	□□□□□ -0.98
TPM1	YNL079C	REB1	P21538	810 aa		8.88	□□□□□ -0.99
TPM1	YNL079C	TSR3	Q12094	313 aa	Known RBP	8.86	□□□□□ -0.99
TPM1	YNL079C	SPT21	P35209	758 aa		8.69	□□□□□ -1.02
TPM1	YNL079C	RIM101	P33400	625 aa		8.57	□□□□□ -1.04
TPM1	YNL079C	MRPL32	P25348	183 aa		8.5	□□□□□ -1.05
TPM1	YNL079C	YCK3	P39962	524 aa		8.46	□□□□□ -1.06
TPM1	YNL079C	YKR023W	P36119	530 aa	Known RBP	8.41	□□□□□ -1.06
TPM1	YNL079C	HAA1	Q12753	694 aa	Known RBP	8.41	□□□□□ -1.06
TPM1	YNL079C	OXP1	P28273	1286 aa		8.31	□□□□□ -1.08
TPM1	YNL079C	PTP3	P40048	928 aa		8.25	□□□□□ -1.09
TPM1	YNL079C	HO	P09932	586 aa		8.24	□□□□□ -1.09
TPM1	YNL079C	TFC8	Q12308	588 aa		8.24	□□□□□ -1.09
TPM1	YNL079C	CDC27	P38042	758 aa		8.23	□□□□□ -1.09
TPM1	YNL079C	DCD1	P06773	312 aa		8.17	□□□□□ -1.1
TPM1	YNL079C	SSP1	P38871	571 aa		8.17	□□□□□ -1.1
TPM1	YNL079C	YIL055C	P40523	627 aa	Known RBP	8.17	□□□□□ -1.1
TPM1	YNL079C	YAH1	Q12184	172 aa	Known RBP	8.16	□□□□□ -1.1
TPM1	YNL079C	YLR271W	Q06152	274 aa		8.08	□□□□□ -1.12
TPM1	YNL079C	RSM7	P47150	247 aa		8.06	□□□□□ -1.12
TPM1	YNL079C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	8.04	□□□□□ -1.12	not detected
TPM1	YNL079C	BCH2	P36122	765 aa		8.01	□□□□□ -1.13
TPM1	YNL079C	RQC2	Q12532	1038 aa	Known RBP	7.99	□□□□□ -1.13
TPM1	YNL079C	YGL015C	P33199	130 aa		7.93	□□□□□ -1.14
TPM1	YNL079C	AI2	P03876	854 aa		7.91	□□□□□ -1.14
TPM1	YNL079C	MGA2	P40578	1113 aa		7.9	□□□□□ -1.14
TPM1	YNL079C	MAP2	P38174	421 aa	Known RBP	7.88	□□□□□ -1.15
TPM1	YNL079C	UBP10	P53874	792 aa	Predicted RBP	7.88	□□□□□ -1.15
TPM1	YNL079C	PSD2	P53037	1138 aa	Known RBP	7.87	□□□□□ -1.15
TPM1	YNL079C	BBC1	P47068	1157 aa		7.86	□□□□□ -1.15
TPM1	YNL079C	SCY1	P53009	804 aa		7.86	□□□□□ -1.15
TPM1	YNL079C	EPS1	P40557	701 aa		7.85	□□□□□ -1.15
TPM1	YNL079C	CST9	Q06032	482 aa		7.83	□□□□□ -1.16
TPM1	YNL079C	BDF1	P35817	686 aa		7.8	□□□□□ -1.16
TPM1	YNL079C	DMA1	P38823	416 aa		7.8	□□□□□ -1.16
TPM1	YNL079C	SLX5	P32828	619 aa	Known RBP	7.71	□□□□□ -1.18
TPM1	YNL079C	MRM1	P25270	412 aa		7.67	□□□□□ -1.18
TPM1	YNL079C	RTG3	P38165	486 aa		7.57	□□□□□ -1.2
TPM1	YNL079C	RCR1	P38212	213 aa		7.57	□□□□□ -1.2
TPM1	YNL079C	TIF4632	P39936	914 aa	Known RBP	7.56	□□□□□ -1.2
TPM1	YNL079C	RAM2	P29703	316 aa		7.55	□□□□□ -1.2
TPM1	YNL079C	TGL3	P40308	642 aa		7.52	□□□□□ -1.21
TPM1	YNL079C	VPS29	P38759	282 aa		7.5	□□□□□ -1.21
TPM1	YNL079C	MAK11	P20484	414 aa	Known RBP	7.43	□□□□□ -1.22
TPM1	YNL079C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.43	□□□□□ -1.22	RIP-Chip
TPM1	YNL079C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	7.43	□□□□□ -1.22	RIP-Chip
TPM1	YNL079C	SAS10	Q12136	610 aa	Predicted RBP	7.4	□□□□□ -1.22
TPM1	YNL079C	STS1	P38637	319 aa		7.39	□□□□□ -1.23
TPM1	YNL079C	YOR238W	Q08634	303 aa		7.39	□□□□□ -1.23
TPM1	YNL079C	DBP1	P24784	617 aa	Known RBP	7.38	□□□□□ -1.23
TPM1	YNL079C	SET1	P38827	1080 aa	Known RBP	7.38	□□□□□ -1.23
TPM1	YNL079C	YAP5	P40574	245 aa		7.38	□□□□□ -1.23
TPM1	YNL079C	YFR006W	P43590	535 aa		7.35	□□□□□ -1.23
TPM1	YNL079C	COQ8	P27697	501 aa		7.32	□□□□□ -1.24
TPM1	YNL079C	MST1	P07236	462 aa		7.31	□□□□□ -1.24
TPM1	YNL079C	PIB1	Q06651	286 aa		7.31	□□□□□ -1.24
TPM1	YNL079C	MIF2	P35201	549 aa		7.29	□□□□□ -1.24
TPM1	YNL079C	EDS1	P38073	919 aa		7.27	□□□□□ -1.25
TPM1	YNL079C	YPR148C	Q06523	435 aa		7.27	□□□□□ -1.25
TPM1	YNL079C	NOP53	Q12080	455 aa	Known RBP	7.27	□□□□□ -1.25
TPM1	YNL079C	IFH1	P39520	1085 aa		7.26	□□□□□ -1.25
TPM1	YNL079C	VMA1	P17255	1071 aa	Known RBP	7.24	□□□□□ -1.25
TPM1	YNL079C	VPS70	P47161	811 aa		7.22	□□□□□ -1.25
TPM1	YNL079C	PTC3	P34221	468 aa	Known RBP	7.21	□□□□□ -1.26
TPM1	YNL079C	CKB1	P43639	278 aa		7.19	□□□□□ -1.26
TPM1	YNL079C	SAM3	Q08986	587 aa		7.18	□□□□□ -1.26
TPM1	YNL079C	GTT3	P39996	337 aa		7.17	□□□□□ -1.26
TPM1	YNL079C	LEU3	P08638	886 aa		7.13	□□□□□ -1.27
TPM1	YNL079C	GRE2	Q12068	342 aa	Known RBP	7.13	□□□□□ -1.27
TPM1	YNL079C	ATH1	P48016	1211 aa		7.11	□□□□□ -1.27
TPM1	YNL079C	GYP5	Q12344	894 aa		7.11	□□□□□ -1.27
TPM1	YNL079C	SPB4	P25808	606 aa	Predicted RBP	7.1	□□□□□ -1.27
TPM1	YNL079C	GUT1	P32190	709 aa		7.1	□□□□□ -1.27
TPM1	YNL079C	YOL036W	Q08206	761 aa		7.09	□□□□□ -1.27
TPM1	YNL079C	REF2	P42073	533 aa	Predicted RBP	7.07	□□□□□ -1.28
TPM1	YNL079C	SET4	P42948	560 aa		7.07	□□□□□ -1.28
TPM1	YNL079C	PBS2	P08018	668 aa		7.06	□□□□□ -1.28
TPM1	YNL079C	WSC3	Q12215	556 aa		7.06	□□□□□ -1.28
TPM1	YNL079C	LEO1	P38439	464 aa		7.05	□□□□□ -1.28
TPM1	YNL079C	MSB4	Q12317	492 aa		7.05	□□□□□ -1.28
TPM1	YNL079C	ABP1	P15891	592 aa	Known RBP	7.04	□□□□□ -1.28
TPM1	YNL079C	DSF2	P38213	736 aa		7.04	□□□□□ -1.28
TPM1	YNL079C	YBL029C-A	Q3E756	94 aa		7.04	□□□□□ -1.28
TPM1	YNL079C	DCW1	P36091	449 aa		7.03	□□□□□ -1.28
TPM1	YNL079C	UBP9	P39967	754 aa		7.03	□□□□□ -1.28
TPM1	YNL079C	SOL3	P38858	249 aa		7.02	□□□□□ -1.29

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms