RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeastyeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RKR1YMR247C MTC1P47018 478 aaKnown RBP2.31□□□□□ -2.04
RKR1YMR247C DRS1P32892 752 aaKnown RBP2.24□□□□□ -2.05
RKR1YMR247C TFA1P36100 482 aa2.03□□□□□ -2.09
RKR1YMR247C ISW2Q08773 1120 aa1.97□□□□□ -2.09
RKR1YMR247C BFR2Q06631 534 aaKnown RBP1.96□□□□□ -2.1
RKR1YMR247C DIP2Q12220 943 aaPredicted RBP1.94□□□□□ -2.1
RKR1YMR247C AVT3P36062 692 aa1.93□□□□□ -2.1
RKR1YMR247C RSE1Q04693 1361 aaKnown RBP1.91□□□□□ -2.1
RKR1YMR247C PRI1P10363 409 aa1.88□□□□□ -2.11
RKR1YMR247C AAD16Q02895 342 aa1.86□□□□□ -2.11
RKR1YMR247C RQC2Q12532 1038 aaKnown RBP1.85□□□□□ -2.11
RKR1YMR247C FAP1P53971 965 aa1.82□□□□□ -2.12
RKR1YMR247C RPG1P38249 964 aaKnown RBP1.81□□□□□ -2.12
RKR1YMR247C HAA1Q12753 694 aaKnown RBP1.78□□□□□ -2.12
RKR1YMR247C REB1P21538 810 aa1.78□□□□□ -2.12
RKR1YMR247C MRPL32P25348 183 aa1.75□□□□□ -2.13
RKR1YMR247C RPL17AP05740 184 aaKnown RBP1.75□□□□□ -2.13
RKR1YMR247C RPL17BP46990 184 aaKnown RBP1.75□□□□□ -2.13
RKR1YMR247C RIM101P33400 625 aa1.73□□□□□ -2.13
RKR1YMR247C ARP8Q12386 881 aaKnown RBP RIP-Chip data1.71□□□□□ -2.14not detected
RKR1YMR247C UBP10P53874 792 aaPredicted RBP1.7□□□□□ -2.14
RKR1YMR247C SPT21P35209 758 aa1.7□□□□□ -2.14
RKR1YMR247C YGL015CP33199 130 aa1.7□□□□□ -2.14
RKR1YMR247C NOP53Q12080 455 aaKnown RBP1.7□□□□□ -2.14
RKR1YMR247C PRY3P47033 881 aa1.69□□□□□ -2.14
RKR1YMR247C NSR1P27476 414 aaKnown RBP RIP-Chip data1.68□□□□□ -2.14not detected
RKR1YMR247C IFH1P39520 1085 aa1.67□□□□□ -2.14
RKR1YMR247C BBC1P47068 1157 aa1.66□□□□□ -2.14
RKR1YMR247C YIL055CP40523 627 aaKnown RBP1.66□□□□□ -2.14
RKR1YMR247C ABP1P15891 592 aaKnown RBP1.65□□□□□ -2.14
RKR1YMR247C TSR3Q12094 313 aaKnown RBP1.65□□□□□ -2.14
RKR1YMR247C TIF4632P39936 914 aaKnown RBP1.65□□□□□ -2.15
RKR1YMR247C TGL3P40308 642 aa1.65□□□□□ -2.15
RKR1YMR247C SSP1P38871 571 aa1.64□□□□□ -2.15
RKR1YMR247C RSM7P47150 247 aa1.63□□□□□ -2.15
RKR1YMR247C TFC8Q12308 588 aa1.62□□□□□ -2.15
RKR1YMR247C YKR023WP36119 530 aaKnown RBP1.61□□□□□ -2.15
RKR1YMR247C MGA2P40578 1113 aa1.61□□□□□ -2.15
RKR1YMR247C EAP1P36041 632 aaKnown RBP1.59□□□□□ -2.15
RKR1YMR247C CKB1P43639 278 aa1.59□□□□□ -2.15
RKR1YMR247C PTP3P40048 928 aa1.59□□□□□ -2.15
RKR1YMR247C RPP1BP10622 106 aaKnown RBP1.58□□□□□ -2.16
RKR1YMR247C UBP9P39967 754 aa1.58□□□□□ -2.16
RKR1YMR247C HGH1P48362 394 aaKnown RBP1.58□□□□□ -2.16
RKR1YMR247C MSB4Q12317 492 aa1.58□□□□□ -2.16
RKR1YMR247C MAK21Q12176 1025 aaKnown RBP1.58□□□□□ -2.16
RKR1YMR247C SLX5P32828 619 aaKnown RBP1.58□□□□□ -2.16
RKR1YMR247C RTT106P40161 455 aa1.58□□□□□ -2.16
RKR1YMR247C MST1P07236 462 aa1.57□□□□□ -2.16
RKR1YMR247C YAP5P40574 245 aa1.57□□□□□ -2.16
RKR1YMR247C RTG3P38165 486 aa1.57□□□□□ -2.16
RKR1YMR247C AI2P03876 854 aa1.57□□□□□ -2.16
RKR1YMR247C OXP1P28273 1286 aa1.57□□□□□ -2.16
RKR1YMR247C PSD2P53037 1138 aaKnown RBP1.56□□□□□ -2.16
RKR1YMR247C YPR148CQ06523 435 aa1.56□□□□□ -2.16
RKR1YMR247C MAK11P20484 414 aaKnown RBP1.55□□□□□ -2.16
RKR1YMR247C YMR1P47147 688 aaKnown RBP RIP-Chip data1.55□□□□□ -2.16not detected
RKR1YMR247C YOR238WQ08634 303 aa1.55□□□□□ -2.16
RKR1YMR247C SAS10Q12136 610 aaPredicted RBP1.55□□□□□ -2.16
RKR1YMR247C EPS1P40557 701 aa1.55□□□□□ -2.16
RKR1YMR247C LEU3P08638 886 aa1.54□□□□□ -2.16
RKR1YMR247C LEO1P38439 464 aa1.54□□□□□ -2.16
RKR1YMR247C JIP4Q03361 876 aa1.54□□□□□ -2.16
RKR1YMR247C CLB5P30283 435 aa1.53□□□□□ -2.16
RKR1YMR247C YLR271WQ06152 274 aa1.53□□□□□ -2.16
RKR1YMR247C SAM3Q08986 587 aa1.53□□□□□ -2.16
RKR1YMR247C CDC27P38042 758 aa1.53□□□□□ -2.16
RKR1YMR247C SCT1P32784 759 aa1.52□□□□□ -2.17
RKR1YMR247C BCH2P36122 765 aa1.52□□□□□ -2.17
RKR1YMR247C YCK3P39962 524 aa1.52□□□□□ -2.17
RKR1YMR247C GTT3P39996 337 aa1.52□□□□□ -2.17
RKR1YMR247C BDF1P35817 686 aa1.51□□□□□ -2.17
RKR1YMR247C SEC61P32915 480 aa1.51□□□□□ -2.17
RKR1YMR247C RPN1P38764 993 aaKnown RBP1.51□□□□□ -2.17
RKR1YMR247C GUT1P32190 709 aa1.51□□□□□ -2.17
RKR1YMR247C MAP2P38174 421 aaKnown RBP1.5□□□□□ -2.17
RKR1YMR247C TFG1P41895 735 aaPredicted RBP1.5□□□□□ -2.17
RKR1YMR247C SCY1P53009 804 aa1.5□□□□□ -2.17
RKR1YMR247C HOP09932 586 aa1.5□□□□□ -2.17
RKR1YMR247C AI4P03878 556 aa1.5□□□□□ -2.17
RKR1YMR247C AIM7Q12156 149 aa1.49□□□□□ -2.17
RKR1YMR247C HTA1P04911 132 aaKnown RBP1.49□□□□□ -2.17
RKR1YMR247C HTA2P04912 132 aa1.49□□□□□ -2.17
RKR1YMR247C YNR021WP53723 404 aaKnown RBP1.49□□□□□ -2.17
RKR1YMR247C TIF11P38912 153 aaKnown RBP1.49□□□□□ -2.17
RKR1YMR247C REF2P42073 533 aaPredicted RBP1.49□□□□□ -2.17
RKR1YMR247C GRE2Q12068 342 aaKnown RBP1.49□□□□□ -2.17
RKR1YMR247C YAH1Q12184 172 aaKnown RBP1.49□□□□□ -2.17
RKR1YMR247C PSE1P32337 1089 aaKnown RBP1.48□□□□□ -2.17
RKR1YMR247C KIC1P38692 1080 aa1.48□□□□□ -2.17
RKR1YMR247C TFB4Q12004 338 aa1.48□□□□□ -2.17
RKR1YMR247C SET1P38827 1080 aaKnown RBP1.48□□□□□ -2.17
RKR1YMR247C MPH3P0CE00 602 aa1.48□□□□□ -2.17
RKR1YMR247C ATH1P48016 1211 aa1.48□□□□□ -2.17
RKR1YMR247C RTF1P53064 558 aa1.48□□□□□ -2.17
RKR1YMR247C YNL035CP53962 389 aaKnown RBP1.48□□□□□ -2.17
RKR1YMR247C COX6P00427 148 aa1.48□□□□□ -2.17
RKR1YMR247C DSF2P38213 736 aa1.48□□□□□ -2.17
RKR1YMR247C SAS4Q04003 481 aa1.48□□□□□ -2.17
RKR1YMR247C CSC1Q06538 782 aa1.48□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms