RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C INO80P53115 1489 aa8.95□□□□□ -0.98
CAF4YKR036C MON2P48563 1636 aaPredicted RBP8.92□□□□□ -0.98
CAF4YKR036C DNA2P38859 1522 aa8.52□□□□□ -1.05
CAF4YKR036C SWR1Q05471 1514 aa8.49□□□□□ -1.05
CAF4YKR036C TCB3Q03640 1545 aaKnown RBP8.46□□□□□ -1.06
CAF4YKR036C TY1B-DR4Q07793 1604 aa8.39□□□□□ -1.07
CAF4YKR036C KOG1P38873 1557 aa8.39□□□□□ -1.07
CAF4YKR036C SGS1P35187 1447 aa8.34□□□□□ -1.07
CAF4YKR036C RSE1Q04693 1361 aaKnown RBP8.24□□□□□ -1.09
CAF4YKR036C SPT6P23615 1451 aaKnown RBP8.11□□□□□ -1.11
CAF4YKR036C HSL1P34244 1518 aa8.11□□□□□ -1.11
CAF4YKR036C SPA2P23201 1466 aaKnown RBP8.06□□□□□ -1.12
CAF4YKR036C ECM5Q03214 1411 aa7.98□□□□□ -1.13
CAF4YKR036C HIR3P47171 1648 aa7.94□□□□□ -1.14
CAF4YKR036C BUD4P47136 1447 aa7.9□□□□□ -1.14
CAF4YKR036C THO2P53552 1597 aaKnown RBP7.88□□□□□ -1.15
CAF4YKR036C MTC1P47018 478 aaKnown RBP7.85□□□□□ -1.15
CAF4YKR036C MDS3P53094 1487 aa7.8□□□□□ -1.16
CAF4YKR036C XRN1P22147 1528 aaKnown RBP7.8□□□□□ -1.16
CAF4YKR036C PEP1P32319 1579 aa7.72□□□□□ -1.17
CAF4YKR036C REV3P14284 1504 aa7.68□□□□□ -1.18
CAF4YKR036C ATG2P53855 1592 aa7.66□□□□□ -1.18
CAF4YKR036C SSN2P38931 1420 aa7.64□□□□□ -1.19
CAF4YKR036C BPT1P14772 1559 aa7.61□□□□□ -1.19
CAF4YKR036C SKI3P17883 1432 aaKnown RBP7.58□□□□□ -1.2
CAF4YKR036C TAF2P23255 1407 aa7.58□□□□□ -1.2
CAF4YKR036C SIN3P22579 1536 aa7.54□□□□□ -1.2
CAF4YKR036C SSK2P53599 1579 aa7.5□□□□□ -1.21
CAF4YKR036C YCF1P39109 1515 aaKnown RBP7.48□□□□□ -1.21
CAF4YKR036C DRS1P32892 752 aaKnown RBP7.44□□□□□ -1.22
CAF4YKR036C ESP1Q03018 1630 aa7.44□□□□□ -1.22
CAF4YKR036C UFD4P33202 1483 aa7.44□□□□□ -1.22
CAF4YKR036C YPK9Q12697 1472 aa7.37□□□□□ -1.23
CAF4YKR036C SCC2Q04002 1493 aa7.37□□□□□ -1.23
CAF4YKR036C MYO2P19524 1574 aaKnown RBP7.34□□□□□ -1.23
CAF4YKR036C RPO31P04051 1460 aa7.33□□□□□ -1.24
CAF4YKR036C CHD1P32657 1468 aa7.32□□□□□ -1.24
CAF4YKR036C RQC2Q12532 1038 aaKnown RBP7.31□□□□□ -1.24
CAF4YKR036C MET5P47169 1442 aa7.3□□□□□ -1.24
CAF4YKR036C CDC25P04821 1589 aa7.3□□□□□ -1.24
CAF4YKR036C DNF1P32660 1571 aa7.27□□□□□ -1.25
CAF4YKR036C BFR2Q06631 534 aaKnown RBP7.25□□□□□ -1.25
CAF4YKR036C PAN1P32521 1480 aa7.25□□□□□ -1.25
CAF4YKR036C TY2B-LR1P0C2J3 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-FP0CX63 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-GR2P0CX64 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-CP25384 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-DR2Q03494 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY1B-DR1Q03855 1755 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-DR3Q07791 1770 aaKnown RBP7.24□□□□□ -1.25
CAF4YKR036C TY2B-OR1Q12113 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-DR1Q12472 1770 aa7.24□□□□□ -1.25
CAF4YKR036C TY2B-OR2Q12501 1770 aa7.24□□□□□ -1.25
CAF4YKR036C ESC1Q03661 1658 aaKnown RBP7.24□□□□□ -1.25
CAF4YKR036C LTE1P07866 1435 aa7.23□□□□□ -1.25
CAF4YKR036C MIF2P35201 549 aa7.23□□□□□ -1.25
CAF4YKR036C TY1B-BRQ12193 1756 aa7.22□□□□□ -1.25
CAF4YKR036C TY1B-GR3Q12316 1755 aa7.22□□□□□ -1.25
CAF4YKR036C TY1B-ORQ92393 1755 aa7.22□□□□□ -1.25
CAF4YKR036C TOP2P06786 1428 aaKnown RBP7.22□□□□□ -1.25
CAF4YKR036C RKR1Q04781 1562 aa7.21□□□□□ -1.26
CAF4YKR036C RPA190P10964 1664 aaKnown RBP7.17□□□□□ -1.26
CAF4YKR036C MMS22Q06164 1454 aa7.17□□□□□ -1.26
CAF4YKR036C TY2B-BQ12491 1770 aa7.15□□□□□ -1.27
CAF4YKR036C TY1B-HO13535 1793 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-DR5P0C2I2 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-DR6P0C2I3 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-LR2P0C2I5 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-LR3P0C2I6 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TY1B-PR1P0C2I9 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TY1B-PR2P0C2J0 1756 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-PR3P0C2J1 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TY1B-JR1P47098 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-ML2Q03434 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TY1B-ER1Q03612 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-ML1Q04711 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TY1B-GR2Q12269 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-OLQ12273 1755 aa7.14□□□□□ -1.27
CAF4YKR036C TY1B-PLQ12414 1755 aaKnown RBP7.14□□□□□ -1.27
CAF4YKR036C TRM732Q03496 1420 aa7.14□□□□□ -1.27
CAF4YKR036C ITT1Q04638 464 aa7.14□□□□□ -1.27
CAF4YKR036C NOP2P40991 618 aaKnown RBP7.13□□□□□ -1.27
CAF4YKR036C POL1P13382 1468 aa7.13□□□□□ -1.27
CAF4YKR036C GEA2P39993 1459 aaKnown RBP7.13□□□□□ -1.27
CAF4YKR036C TY1B-DR3Q99231 1755 aa7.13□□□□□ -1.27
CAF4YKR036C BNI1P41832 1953 aa7.12□□□□□ -1.27
CAF4YKR036C SMC4Q12267 1418 aa7.1□□□□□ -1.27
CAF4YKR036C YOR1P53049 1477 aa7.08□□□□□ -1.28
CAF4YKR036C SPP41P38904 1435 aa7.08□□□□□ -1.28
CAF4YKR036C ABP1P15891 592 aaKnown RBP7.07□□□□□ -1.28
CAF4YKR036C STU1P38198 1513 aa7.07□□□□□ -1.28
CAF4YKR036C NUP159P40477 1460 aa7.07□□□□□ -1.28
CAF4YKR036C MMS1Q06211 1407 aa7.05□□□□□ -1.28
CAF4YKR036C DRS2P39524 1355 aa7.04□□□□□ -1.28
CAF4YKR036C TSC11P40061 1430 aa7.03□□□□□ -1.28
CAF4YKR036C YRF1-1P0CX20 1796 aa7.03□□□□□ -1.28
CAF4YKR036C YRF1-5P0CX21 1796 aa7.03□□□□□ -1.28
CAF4YKR036C YRF1-8P0CX22 1796 aa7.03□□□□□ -1.28
CAF4YKR036C VPS15P22219 1454 aa7.02□□□□□ -1.28
CAF4YKR036C NSR1P27476 414 aaKnown RBP RIP-Chip data7.01□□□□□ -1.29not detected
Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms