RNA–Protein interactions for RNA: YER008C

SEC3, Transcript of Subunit of the exocyst complex, yeastyeast

Gene SEC3, Length 4,011 nt, Biotype protein coding, Subcellular localisation Cellular bud .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC3YER008C FAP1P53971 965 aa4.75□□□□□ -1.65
SEC3YER008C PRY3P47033 881 aa4.44□□□□□ -1.7
SEC3YER008C DRS1P32892 752 aaKnown RBP4.05□□□□□ -1.76
SEC3YER008C HAA1Q12753 694 aaKnown RBP3.9□□□□□ -1.79
SEC3YER008C MTC1P47018 478 aaKnown RBP3.86□□□□□ -1.79
SEC3YER008C AAD16Q02895 342 aa3.79□□□□□ -1.8
SEC3YER008C YCK3P39962 524 aa3.71□□□□□ -1.82
SEC3YER008C BFR2Q06631 534 aaKnown RBP3.55□□□□□ -1.84
SEC3YER008C TSR3Q12094 313 aaKnown RBP3.54□□□□□ -1.84
SEC3YER008C PRI1P10363 409 aa3.54□□□□□ -1.84
SEC3YER008C SIS1P25294 352 aaKnown RBP3.46□□□□□ -1.86
SEC3YER008C BUD31P25337 157 aaPredicted RBP3.43□□□□□ -1.86
SEC3YER008C MRPL32P25348 183 aa3.4□□□□□ -1.87
SEC3YER008C YGL015CP33199 130 aa3.4□□□□□ -1.87
SEC3YER008C DIP2Q12220 943 aaPredicted RBP3.37□□□□□ -1.87
SEC3YER008C RPG1P38249 964 aaKnown RBP3.35□□□□□ -1.87
SEC3YER008C ISW2Q08773 1120 aa3.32□□□□□ -1.88
SEC3YER008C RSE1Q04693 1361 aaKnown RBP3.21□□□□□ -1.9
SEC3YER008C AVT3P36062 692 aa3.16□□□□□ -1.9
SEC3YER008C REB1P21538 810 aa3.15□□□□□ -1.9
SEC3YER008C RPL17AP05740 184 aaKnown RBP3.14□□□□□ -1.91
SEC3YER008C RPL17BP46990 184 aaKnown RBP3.14□□□□□ -1.91
SEC3YER008C TFA1P36100 482 aa3.14□□□□□ -1.91
SEC3YER008C UBP9P39967 754 aa3.13□□□□□ -1.91
SEC3YER008C MAP2P38174 421 aaKnown RBP2.98□□□□□ -1.93
SEC3YER008C PTP3P40048 928 aa2.98□□□□□ -1.93
SEC3YER008C RQC2Q12532 1038 aaKnown RBP2.95□□□□□ -1.94
SEC3YER008C YAH1Q12184 172 aaKnown RBP2.94□□□□□ -1.94
SEC3YER008C YIL055CP40523 627 aaKnown RBP2.92□□□□□ -1.94
SEC3YER008C CDC27P38042 758 aa2.91□□□□□ -1.94
SEC3YER008C TIF4632P39936 914 aaKnown RBP2.9□□□□□ -1.94
SEC3YER008C YJL171CP46992 396 aa2.89□□□□□ -1.95
SEC3YER008C UBP10P53874 792 aaPredicted RBP2.85□□□□□ -1.95
SEC3YER008C SCY1P53009 804 aa2.84□□□□□ -1.96
SEC3YER008C HOP09932 586 aa2.83□□□□□ -1.96
SEC3YER008C ARP8Q12386 881 aaKnown RBP RIP-Chip data2.83□□□□□ -1.96not detected
SEC3YER008C SLX5P32828 619 aaKnown RBP2.8□□□□□ -1.96
SEC3YER008C DCD1P06773 312 aa2.8□□□□□ -1.96
SEC3YER008C YBL029C-AQ3E756 94 aa2.79□□□□□ -1.96
SEC3YER008C SSP1P38871 571 aa2.79□□□□□ -1.96
SEC3YER008C SPT21P35209 758 aa2.76□□□□□ -1.97
SEC3YER008C RIM101P33400 625 aa2.76□□□□□ -1.97
SEC3YER008C WSC3Q12215 556 aa2.76□□□□□ -1.97
SEC3YER008C DMA1P38823 416 aa2.74□□□□□ -1.97
SEC3YER008C BBC1P47068 1157 aa2.73□□□□□ -1.97
SEC3YER008C RSM7P47150 247 aa2.73□□□□□ -1.97
SEC3YER008C SPP1Q03012 353 aa2.72□□□□□ -1.97
SEC3YER008C TGL3P40308 642 aa2.71□□□□□ -1.97
SEC3YER008C OXP1P28273 1286 aa2.71□□□□□ -1.98
SEC3YER008C YKR023WP36119 530 aaKnown RBP2.71□□□□□ -1.98
SEC3YER008C TFC8Q12308 588 aa2.7□□□□□ -1.98
SEC3YER008C AI2P03876 854 aa2.67□□□□□ -1.98
SEC3YER008C YLR271WQ06152 274 aa2.66□□□□□ -1.98
SEC3YER008C MRM1P25270 412 aa2.64□□□□□ -1.99
SEC3YER008C BCH2P36122 765 aa2.64□□□□□ -1.99
SEC3YER008C MGA2P40578 1113 aa2.64□□□□□ -1.99
SEC3YER008C EPS1P40557 701 aa2.63□□□□□ -1.99
SEC3YER008C BMT6Q12291 365 aa2.62□□□□□ -1.99
SEC3YER008C CST9Q06032 482 aa2.61□□□□□ -1.99
SEC3YER008C PIB1Q06651 286 aa2.61□□□□□ -1.99
SEC3YER008C GTT3P39996 337 aa2.6□□□□□ -1.99
SEC3YER008C VNX1P42839 908 aa2.59□□□□□ -2
SEC3YER008C MIF2P35201 549 aa2.58□□□□□ -2
SEC3YER008C BDF1P35817 686 aa2.58□□□□□ -2
SEC3YER008C YOR238WQ08634 303 aa2.58□□□□□ -2
SEC3YER008C SPB4P25808 606 aaPredicted RBP2.57□□□□□ -2
SEC3YER008C YFR006WP43590 535 aa2.57□□□□□ -2
SEC3YER008C AIR2Q12476 344 aaKnown RBP2.57□□□□□ -2
SEC3YER008C RTG3P38165 486 aa2.55□□□□□ -2
SEC3YER008C VPS70P47161 811 aa2.54□□□□□ -2
SEC3YER008C PSD2P53037 1138 aaKnown RBP2.52□□□□□ -2.01
SEC3YER008C FKH1P40466 484 aa2.52□□□□□ -2.01
SEC3YER008C LDB19Q12502 818 aa2.52□□□□□ -2.01
SEC3YER008C TAF7Q05021 590 aa2.52□□□□□ -2.01
SEC3YER008C DBP1P24784 617 aaKnown RBP2.51□□□□□ -2.01
SEC3YER008C RCR1P38212 213 aa2.51□□□□□ -2.01
SEC3YER008C TIF11P38912 153 aaKnown RBP2.5□□□□□ -2.01
SEC3YER008C SET1P38827 1080 aaKnown RBP2.5□□□□□ -2.01
SEC3YER008C ULI1P43604 169 aa2.49□□□□□ -2.01
SEC3YER008C YAP5P40574 245 aa2.48□□□□□ -2.01
SEC3YER008C MON2P48563 1636 aaPredicted RBP2.48□□□□□ -2.01
SEC3YER008C RAM2P29703 316 aa2.48□□□□□ -2.01
SEC3YER008C ATH1P48016 1211 aa2.48□□□□□ -2.01
SEC3YER008C KIC1P38692 1080 aa2.47□□□□□ -2.01
SEC3YER008C YMR1P47147 688 aaKnown RBP RIP-Chip data2.47□□□□□ -2.01not detected
SEC3YER008C DCW1P36091 449 aa2.46□□□□□ -2.02
SEC3YER008C SET4P42948 560 aa2.46□□□□□ -2.02
SEC3YER008C COQ8P27697 501 aa2.45□□□□□ -2.02
SEC3YER008C IFH1P39520 1085 aa2.45□□□□□ -2.02
SEC3YER008C GRE2Q12068 342 aaKnown RBP2.44□□□□□ -2.02
SEC3YER008C GYP5Q12344 894 aa2.44□□□□□ -2.02
SEC3YER008C MAK11P20484 414 aaKnown RBP2.43□□□□□ -2.02
SEC3YER008C TFG1P41895 735 aaPredicted RBP2.43□□□□□ -2.02
SEC3YER008C PEX29Q03370 554 aa2.43□□□□□ -2.02
SEC3YER008C STS1P38637 319 aa2.42□□□□□ -2.02
SEC3YER008C VPS29P38759 282 aa2.42□□□□□ -2.02
SEC3YER008C VHR2P40041 505 aa2.42□□□□□ -2.02
SEC3YER008C CKB1P43639 278 aa2.42□□□□□ -2.02
SEC3YER008C ATF2P53296 535 aa2.42□□□□□ -2.02
SEC3YER008C BCK2P33306 851 aa2.41□□□□□ -2.02
Retrieved 100 of 5,963 RNA–protein pairs in 647.5 ms