RNA–Protein interactions for RNA: YDR378C

LSM6, Transcript of Lsm (Like Sm) protein, yeastyeast

Gene LSM6, Length 261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSM6YDR378C DRS1P32892 752 aaKnown RBP15.9■□□□□ 0.14
LSM6YDR378C MTC1P47018 478 aaKnown RBP15.67■□□□□ 0.1
LSM6YDR378C BFR2Q06631 534 aaKnown RBP13.83□□□□□ -0.2
LSM6YDR378C DIP2Q12220 943 aaPredicted RBP13.5□□□□□ -0.25
LSM6YDR378C AVT3P36062 692 aa13.3□□□□□ -0.28
LSM6YDR378C TFA1P36100 482 aa13.07□□□□□ -0.32
LSM6YDR378C FAP1P53971 965 aa12.77□□□□□ -0.37
LSM6YDR378C ISW2Q08773 1120 aa12.77□□□□□ -0.37
LSM6YDR378C RSE1Q04693 1361 aaKnown RBP12.71□□□□□ -0.37
LSM6YDR378C RPG1P38249 964 aaKnown RBP12.57□□□□□ -0.4
LSM6YDR378C PRI1P10363 409 aa12.51□□□□□ -0.41
LSM6YDR378C AAD16Q02895 342 aa12.3□□□□□ -0.44
LSM6YDR378C RPL17AP05740 184 aaKnown RBP12.22□□□□□ -0.45
LSM6YDR378C RPL17BP46990 184 aaKnown RBP12.22□□□□□ -0.45
LSM6YDR378C REB1P21538 810 aa12.09□□□□□ -0.47
LSM6YDR378C PRY3P47033 881 aa11.92□□□□□ -0.5
LSM6YDR378C TSR3Q12094 313 aaKnown RBP11.91□□□□□ -0.5
LSM6YDR378C SPT21P35209 758 aa11.71□□□□□ -0.53
LSM6YDR378C RIM101P33400 625 aa11.62□□□□□ -0.55
LSM6YDR378C MRPL32P25348 183 aa11.48□□□□□ -0.57
LSM6YDR378C PTP3P40048 928 aa11.34□□□□□ -0.59
LSM6YDR378C RQC2Q12532 1038 aaKnown RBP11.34□□□□□ -0.59
LSM6YDR378C YKR023WP36119 530 aaKnown RBP11.32□□□□□ -0.6
LSM6YDR378C HAA1Q12753 694 aaKnown RBP11.26□□□□□ -0.61
LSM6YDR378C OXP1P28273 1286 aa11.24□□□□□ -0.61
LSM6YDR378C SSP1P38871 571 aa11.19□□□□□ -0.62
LSM6YDR378C YIL055CP40523 627 aaKnown RBP11.19□□□□□ -0.62
LSM6YDR378C YCK3P39962 524 aa11.15□□□□□ -0.62
LSM6YDR378C YAH1Q12184 172 aaKnown RBP11.15□□□□□ -0.62
LSM6YDR378C HOP09932 586 aa11.12□□□□□ -0.63
LSM6YDR378C TFC8Q12308 588 aa11.11□□□□□ -0.63
LSM6YDR378C ARP8Q12386 881 aaKnown RBP RIP-Chip data11.05□□□□□ -0.64not detected
LSM6YDR378C CDC27P38042 758 aa11.04□□□□□ -0.64
LSM6YDR378C DCD1P06773 312 aa11.01□□□□□ -0.65
LSM6YDR378C YLR271WQ06152 274 aa10.97□□□□□ -0.65
LSM6YDR378C RSM7P47150 247 aa10.96□□□□□ -0.65
LSM6YDR378C DMA1P38823 416 aa10.84□□□□□ -0.67
LSM6YDR378C BCH2P36122 765 aa10.79□□□□□ -0.68
LSM6YDR378C MGA2P40578 1113 aa10.79□□□□□ -0.68
LSM6YDR378C AI2P03876 854 aa10.75□□□□□ -0.69
LSM6YDR378C BBC1P47068 1157 aa10.73□□□□□ -0.69
LSM6YDR378C YGL015CP33199 130 aa10.66□□□□□ -0.7
LSM6YDR378C PSD2P53037 1138 aaKnown RBP10.65□□□□□ -0.7
LSM6YDR378C CST9Q06032 482 aa10.63□□□□□ -0.71
LSM6YDR378C EPS1P40557 701 aa10.62□□□□□ -0.71
LSM6YDR378C SCY1P53009 804 aa10.61□□□□□ -0.71
LSM6YDR378C UBP10P53874 792 aaPredicted RBP10.61□□□□□ -0.71
LSM6YDR378C MAP2P38174 421 aaKnown RBP10.58□□□□□ -0.72
LSM6YDR378C BDF1P35817 686 aa10.54□□□□□ -0.72
LSM6YDR378C MRM1P25270 412 aa10.44□□□□□ -0.74
LSM6YDR378C SLX5P32828 619 aaKnown RBP10.42□□□□□ -0.74
LSM6YDR378C RTG3P38165 486 aa10.33□□□□□ -0.76
LSM6YDR378C RAM2P29703 316 aa10.26□□□□□ -0.77
LSM6YDR378C RCR1P38212 213 aa10.25□□□□□ -0.77
LSM6YDR378C TIF4632P39936 914 aaKnown RBP10.23□□□□□ -0.77
LSM6YDR378C SAS10Q12136 610 aaPredicted RBP10.18□□□□□ -0.78
LSM6YDR378C VPS29P38759 282 aa10.15□□□□□ -0.78
LSM6YDR378C MAK11P20484 414 aaKnown RBP10.13□□□□□ -0.79
LSM6YDR378C SET1P38827 1080 aaKnown RBP10.12□□□□□ -0.79
LSM6YDR378C TGL3P40308 642 aa10.12□□□□□ -0.79
LSM6YDR378C YMR1P47147 688 aaKnown RBP RIP-Chip data10.1□□□□□ -0.79not detected
LSM6YDR378C YOR238WQ08634 303 aa10.03□□□□□ -0.8
LSM6YDR378C DBP1P24784 617 aaKnown RBP10.02□□□□□ -0.81
LSM6YDR378C IFH1P39520 1085 aa10.02□□□□□ -0.81
LSM6YDR378C YAP5P40574 245 aa10.01□□□□□ -0.81
LSM6YDR378C NSR1P27476 414 aaKnown RBP RIP-Chip data10□□□□□ -0.81 RIP-Chip
LSM6YDR378C YFR006WP43590 535 aa10□□□□□ -0.81
LSM6YDR378C STS1P38637 319 aa9.99□□□□□ -0.81
LSM6YDR378C COQ8P27697 501 aa9.98□□□□□ -0.81
LSM6YDR378C MIF2P35201 549 aa9.96□□□□□ -0.82
LSM6YDR378C VPS70P47161 811 aa9.95□□□□□ -0.82
LSM6YDR378C YPR148CQ06523 435 aa9.94□□□□□ -0.82
LSM6YDR378C CKB1P43639 278 aa9.93□□□□□ -0.82
LSM6YDR378C NOP53Q12080 455 aaKnown RBP9.92□□□□□ -0.82
LSM6YDR378C PIB1Q06651 286 aa9.91□□□□□ -0.82
LSM6YDR378C LEU3P08638 886 aa9.9□□□□□ -0.82
LSM6YDR378C LEO1P38439 464 aa9.9□□□□□ -0.82
LSM6YDR378C SPB4P25808 606 aaPredicted RBP9.86□□□□□ -0.83
LSM6YDR378C EDS1P38073 919 aa9.86□□□□□ -0.83
LSM6YDR378C PTC3P34221 468 aaKnown RBP9.81□□□□□ -0.84
LSM6YDR378C VMA1P17255 1071 aaKnown RBP9.8□□□□□ -0.84
LSM6YDR378C MST1P07236 462 aa9.79□□□□□ -0.84
LSM6YDR378C GTT3P39996 337 aa9.78□□□□□ -0.84
LSM6YDR378C PBS2P08018 668 aa9.72□□□□□ -0.85
LSM6YDR378C ATH1P48016 1211 aa9.72□□□□□ -0.85
LSM6YDR378C REF2P42073 533 aaPredicted RBP9.71□□□□□ -0.86
LSM6YDR378C GRE2Q12068 342 aaKnown RBP9.71□□□□□ -0.86
LSM6YDR378C SAM3Q08986 587 aa9.69□□□□□ -0.86
LSM6YDR378C GUT1P32190 709 aa9.67□□□□□ -0.86
LSM6YDR378C DSF2P38213 736 aa9.67□□□□□ -0.86
LSM6YDR378C RPN1P38764 993 aaKnown RBP9.67□□□□□ -0.86
LSM6YDR378C GYP5Q12344 894 aa9.66□□□□□ -0.86
LSM6YDR378C MAK21Q12176 1025 aaKnown RBP9.6□□□□□ -0.87
LSM6YDR378C MAM3Q12296 706 aa9.6□□□□□ -0.87
LSM6YDR378C YOL036WQ08206 761 aa9.59□□□□□ -0.87
LSM6YDR378C ABP1P15891 592 aaKnown RBP9.58□□□□□ -0.88
LSM6YDR378C SET4P42948 560 aa9.57□□□□□ -0.88
LSM6YDR378C COX6P00427 148 aa9.56□□□□□ -0.88
LSM6YDR378C DCW1P36091 449 aa9.56□□□□□ -0.88
LSM6YDR378C VHR2P40041 505 aa9.56□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms