RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeastyeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VMS1YDR049W MTC1P47018 478 aaKnown RBP11.52□□□□□ -0.57
VMS1YDR049W DRS1P32892 752 aaKnown RBP11.23□□□□□ -0.61
VMS1YDR049W FAP1P53971 965 aa10.97□□□□□ -0.65
VMS1YDR049W TFA1P36100 482 aa10.7□□□□□ -0.7
VMS1YDR049W RQC2Q12532 1038 aaKnown RBP10.51□□□□□ -0.73
VMS1YDR049W BFR2Q06631 534 aaKnown RBP10.32□□□□□ -0.76
VMS1YDR049W PRY3P47033 881 aa10.31□□□□□ -0.76
VMS1YDR049W TAF7Q05021 590 aa10.3□□□□□ -0.76
VMS1YDR049W AAD16Q02895 342 aa10.02□□□□□ -0.81
VMS1YDR049W PRI1P10363 409 aa9.98□□□□□ -0.81
VMS1YDR049W ISW2Q08773 1120 aa9.71□□□□□ -0.85
VMS1YDR049W HAA1Q12753 694 aaKnown RBP9.67□□□□□ -0.86
VMS1YDR049W YCK3P39962 524 aa9.6□□□□□ -0.87
VMS1YDR049W RPG1P38249 964 aaKnown RBP9.58□□□□□ -0.88
VMS1YDR049W TSR3Q12094 313 aaKnown RBP9.41□□□□□ -0.9
VMS1YDR049W AVT3P36062 692 aa9.38□□□□□ -0.91
VMS1YDR049W DMA1P38823 416 aa9.35□□□□□ -0.91
VMS1YDR049W LEO1P38439 464 aa9.3□□□□□ -0.92
VMS1YDR049W DIP2Q12220 943 aaPredicted RBP9.19□□□□□ -0.94
VMS1YDR049W MRPL32P25348 183 aa9.11□□□□□ -0.95
VMS1YDR049W RSE1Q04693 1361 aaKnown RBP9.05□□□□□ -0.96
VMS1YDR049W YGL015CP33199 130 aa8.87□□□□□ -0.99
VMS1YDR049W REB1P21538 810 aa8.81□□□□□ -1
VMS1YDR049W RPL17AP05740 184 aaKnown RBP8.78□□□□□ -1
VMS1YDR049W RPL17BP46990 184 aaKnown RBP8.78□□□□□ -1
VMS1YDR049W LEU3P08638 886 aa8.67□□□□□ -1.02
VMS1YDR049W NAP1P25293 417 aaKnown RBP8.63□□□□□ -1.03
VMS1YDR049W AIM44Q99299 758 aa8.62□□□□□ -1.03
VMS1YDR049W URN1Q06525 465 aaKnown RBP8.57□□□□□ -1.04
VMS1YDR049W IFH1P39520 1085 aa8.53□□□□□ -1.04
VMS1YDR049W IOC4Q04213 475 aa8.53□□□□□ -1.04
VMS1YDR049W DMA2P53924 522 aa8.51□□□□□ -1.05
VMS1YDR049W CDC27P38042 758 aa8.47□□□□□ -1.05
VMS1YDR049W PTP3P40048 928 aa8.44□□□□□ -1.06
VMS1YDR049W ABP1P15891 592 aaKnown RBP8.43□□□□□ -1.06
VMS1YDR049W SAS10Q12136 610 aaPredicted RBP8.42□□□□□ -1.06
VMS1YDR049W RLF2Q12495 606 aa8.4□□□□□ -1.06
VMS1YDR049W UBP10P53874 792 aaPredicted RBP8.35□□□□□ -1.07
VMS1YDR049W YKR023WP36119 530 aaKnown RBP8.34□□□□□ -1.07
VMS1YDR049W ORC1P54784 914 aaPredicted RBP8.34□□□□□ -1.07
VMS1YDR049W BUD31P25337 157 aaPredicted RBP8.3□□□□□ -1.08
VMS1YDR049W SPT21P35209 758 aa8.3□□□□□ -1.08
VMS1YDR049W RPN1P38764 993 aaKnown RBP8.3□□□□□ -1.08
VMS1YDR049W MAP2P38174 421 aaKnown RBP8.29□□□□□ -1.08
VMS1YDR049W TFC8Q12308 588 aa8.19□□□□□ -1.1
VMS1YDR049W HOP09932 586 aa8.18□□□□□ -1.1
VMS1YDR049W YRB30P53107 440 aaPredicted RBP8.18□□□□□ -1.1
VMS1YDR049W DCD1P06773 312 aa8.13□□□□□ -1.11
VMS1YDR049W CKB1P43639 278 aa8.1□□□□□ -1.11
VMS1YDR049W TOP1P04786 769 aa8.09□□□□□ -1.11
VMS1YDR049W SSP1P38871 571 aa8.09□□□□□ -1.11
VMS1YDR049W TIF4632P39936 914 aaKnown RBP8.06□□□□□ -1.12
VMS1YDR049W SCY1P53009 804 aa8.05□□□□□ -1.12
VMS1YDR049W YML020WQ03722 664 aa8.04□□□□□ -1.12
VMS1YDR049W SNU71P53207 620 aaKnown RBP8.02□□□□□ -1.12
VMS1YDR049W SLX5P32828 619 aaKnown RBP8□□□□□ -1.13
VMS1YDR049W TGL3P40308 642 aa8□□□□□ -1.13
VMS1YDR049W NOP8Q08287 484 aaPredicted RBP8□□□□□ -1.13
VMS1YDR049W UBP9P39967 754 aa7.96□□□□□ -1.14
VMS1YDR049W RIM101P33400 625 aa7.94□□□□□ -1.14
VMS1YDR049W SIS1P25294 352 aaKnown RBP7.92□□□□□ -1.14
VMS1YDR049W BCH2P36122 765 aa7.89□□□□□ -1.15
VMS1YDR049W BRL1P38770 471 aa7.89□□□□□ -1.15
VMS1YDR049W SLX8P40072 274 aa7.89□□□□□ -1.15
VMS1YDR049W NOP7P53261 605 aaKnown RBP7.88□□□□□ -1.15
VMS1YDR049W SPB4P25808 606 aaPredicted RBP7.86□□□□□ -1.15
VMS1YDR049W HGH1P48362 394 aaKnown RBP7.81□□□□□ -1.16
VMS1YDR049W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.81□□□□□ -1.16not detected
VMS1YDR049W GEF1P37020 779 aa7.78□□□□□ -1.16
VMS1YDR049W SSA1P10591 642 aaKnown RBP7.77□□□□□ -1.17
VMS1YDR049W KIN1P13185 1064 aa7.77□□□□□ -1.17
VMS1YDR049W NUG1P40010 520 aaKnown RBP7.77□□□□□ -1.17
VMS1YDR049W SWE1P32944 819 aa7.75□□□□□ -1.17
VMS1YDR049W ATG36P46983 293 aa7.72□□□□□ -1.17
VMS1YDR049W MRX12P47084 519 aa7.72□□□□□ -1.17
VMS1YDR049W BRN1P38170 754 aa7.71□□□□□ -1.18
VMS1YDR049W SUB1P54000 292 aaKnown RBP7.7□□□□□ -1.18
VMS1YDR049W MET10P39692 1035 aa7.69□□□□□ -1.18
VMS1YDR049W YAH1Q12184 172 aaKnown RBP7.68□□□□□ -1.18
VMS1YDR049W ASF1P32447 279 aa7.68□□□□□ -1.18
VMS1YDR049W FAR11P53917 953 aa7.68□□□□□ -1.18
VMS1YDR049W MAM3Q12296 706 aa7.68□□□□□ -1.18
VMS1YDR049W EPS1P40557 701 aa7.67□□□□□ -1.18
VMS1YDR049W MGA2P40578 1113 aa7.67□□□□□ -1.18
VMS1YDR049W VPS72Q03388 795 aa7.67□□□□□ -1.18
VMS1YDR049W YLR271WQ06152 274 aa7.67□□□□□ -1.18
VMS1YDR049W SUB2Q07478 446 aaKnown RBP7.67□□□□□ -1.18
VMS1YDR049W PAM1P37304 830 aaKnown RBP7.66□□□□□ -1.18
VMS1YDR049W LAM6Q08001 693 aa7.66□□□□□ -1.18
VMS1YDR049W YTA7P40340 1379 aa7.66□□□□□ -1.18
VMS1YDR049W RTS3P53289 263 aa7.66□□□□□ -1.18
VMS1YDR049W MDG1P53885 366 aa7.66□□□□□ -1.18
VMS1YDR049W DOS2P54858 310 aa7.66□□□□□ -1.18
VMS1YDR049W BDF1P35817 686 aa7.65□□□□□ -1.18
VMS1YDR049W SPC42P36094 363 aa7.65□□□□□ -1.18
VMS1YDR049W YNR021WP53723 404 aaKnown RBP7.65□□□□□ -1.18
VMS1YDR049W GIN4Q12263 1142 aa7.65□□□□□ -1.18
VMS1YDR049W OXP1P28273 1286 aa7.64□□□□□ -1.19
VMS1YDR049W VPS70P47161 811 aa7.64□□□□□ -1.19
VMS1YDR049W MNN4P36044 1178 aa7.64□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms