RNA–Protein interactions for RNA: ENST00000638820.1

SCN8A-215, Transcript of sodium voltage-gated channel alpha subunit 8, humanhuman

TSL 5 BASIC

Gene SCN8A, Length 3,359 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN8A-215ENST00000638820 NISCHQ9Y2I1 1504 aa29.14■■■□□ 2.26
SCN8A-215ENST00000638820 CCDC180Q9P1Z9 1646 aa25.13■■□□□ 1.61
SCN8A-215ENST00000638820 DCAF8L2P0C7V8 631 aa25.08■■□□□ 1.6
SCN8A-215ENST00000638820 SHROOM4Q9ULL8 1493 aa24.47■■□□□ 1.51
SCN8A-215ENST00000638820 ZCCHC6Q5VYS8 1495 aaKnown RBP24.4■■□□□ 1.5
SCN8A-215ENST00000638820 ABCC9O60706 1549 aa24.4■■□□□ 1.5
SCN8A-215ENST00000638820 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
SCN8A-215ENST00000638820 SUPT5HO00267 1087 aaKnown RBP23.68■■□□□ 1.38
SCN8A-215ENST00000638820 NACADO15069 1562 aa23.6■■□□□ 1.37
SCN8A-215ENST00000638820 SCRIBQ14160 1630 aa23.54■■□□□ 1.36
SCN8A-215ENST00000638820 MYO15BQ96JP2 1530 aa23.5■■□□□ 1.35
SCN8A-215ENST00000638820 RB1CC1Q8TDY2 1594 aa23.49■■□□□ 1.35
SCN8A-215ENST00000638820 PABPN1Q86U42 306 aaKnown RBP eCLIP23.22■■□□□ 1.31
SCN8A-215ENST00000638820 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
SCN8A-215ENST00000638820 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
SCN8A-215ENST00000638820 RSF1Q96T23 1441 aaPredicted RBP22.72■■□□□ 1.23
SCN8A-215ENST00000638820 MROH2BQ7Z745 1585 aa22.58■■□□□ 1.21
SCN8A-215ENST00000638820 BICRAQ9NZM4 1560 aa22.58■■□□□ 1.21
SCN8A-215ENST00000638820 BAZ1AQ9NRL2 1556 aaPredicted RBP22.54■■□□□ 1.2
SCN8A-215ENST00000638820 WIZO95785 1651 aa22.38■■□□□ 1.17
SCN8A-215ENST00000638820 SMARCA4P51532 1647 aa22.36■■□□□ 1.17
SCN8A-215ENST00000638820 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
SCN8A-215ENST00000638820 TRIM41Q8WV44 630 aa22.14■■□□□ 1.13
SCN8A-215ENST00000638820 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
SCN8A-215ENST00000638820 ATAD2BQ9ULI0 1458 aa22.1■■□□□ 1.13
SCN8A-215ENST00000638820 EIF4G1Q04637 1599 aaKnown RBP22.08■■□□□ 1.13
SCN8A-215ENST00000638820 TOP2AP11388 1531 aaKnown RBP22.07■■□□□ 1.12
SCN8A-215ENST00000638820 SMARCA2P51531 1590 aa22.06■■□□□ 1.12
SCN8A-215ENST00000638820 CCDC88BA6NC98 1476 aa21.99■■□□□ 1.11
SCN8A-215ENST00000638820 FAM9AQ8IZU1 332 aaPredicted RBP21.97■■□□□ 1.11
SCN8A-215ENST00000638820 EHMT2Q96KQ7 1210 aa21.87■■□□□ 1.09
SCN8A-215ENST00000638820 PEG3Q9GZU2 1588 aa21.86■■□□□ 1.09
SCN8A-215ENST00000638820 NCAPD3P42695 1498 aa21.83■■□□□ 1.09
SCN8A-215ENST00000638820 CC2D2AQ9P2K1 1620 aa21.78■■□□□ 1.08
SCN8A-215ENST00000638820 HMGXB3Q12766 1538 aa21.69■■□□□ 1.06
SCN8A-215ENST00000638820 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
SCN8A-215ENST00000638820 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
SCN8A-215ENST00000638820 WRNQ14191 1432 aaPredicted RBP eCLIP21.53■■□□□ 1.04
SCN8A-215ENST00000638820 DNAJC5BQ9UF47 199 aa21.5■■□□□ 1.03
SCN8A-215ENST00000638820 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
SCN8A-215ENST00000638820 CFTRP13569 1480 aa21.37■■□□□ 1.01
SCN8A-215ENST00000638820 UBTFP17480 764 aaKnown RBP21.33■■□□□ 1.01
SCN8A-215ENST00000638820 CSRNP3Q8WYN3 585 aa21.29■■□□□ 1
SCN8A-215ENST00000638820 NESP48681 1621 aa21.29■■□□□ 1
SCN8A-215ENST00000638820 SOGA1O94964 1423 aa21.27■■□□□ 1
SCN8A-215ENST00000638820 FANCD2Q9BXW9 1451 aa21.22■□□□□ 0.99
SCN8A-215ENST00000638820 RANGAP1P46060 587 aaPredicted RBP21.21■□□□□ 0.99
SCN8A-215ENST00000638820 SYNJ1O43426 1573 aa21.21■□□□□ 0.99
SCN8A-215ENST00000638820 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
SCN8A-215ENST00000638820 RUSC2Q8N2Y8 1516 aa21.14■□□□□ 0.97
SCN8A-215ENST00000638820 EEA1Q15075 1411 aa21.12■□□□□ 0.97
SCN8A-215ENST00000638820 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
SCN8A-215ENST00000638820 CUX1P39880 1505 aa21.08■□□□□ 0.97
SCN8A-215ENST00000638820 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
SCN8A-215ENST00000638820 TOP2BQ02880 1626 aa21.06■□□□□ 0.96
SCN8A-215ENST00000638820 KIF27Q86VH2 1401 aa21.02■□□□□ 0.96
SCN8A-215ENST00000638820 ERCC6Q03468 1493 aa21.02■□□□□ 0.96
SCN8A-215ENST00000638820 CUX2O14529 1486 aa20.99■□□□□ 0.95
SCN8A-215ENST00000638820 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
SCN8A-215ENST00000638820 PRDM2Q13029 1718 aa20.94■□□□□ 0.94
SCN8A-215ENST00000638820 BIVM-ERCC5R4GMW8 1640 aa20.92■□□□□ 0.94
SCN8A-215ENST00000638820 GOLGA3Q08378 1498 aa20.92■□□□□ 0.94
SCN8A-215ENST00000638820 TOPBP1Q92547 1522 aa20.91■□□□□ 0.94
SCN8A-215ENST00000638820 PPARGC1BQ86YN6 1023 aaKnown RBP20.9■□□□□ 0.94
SCN8A-215ENST00000638820 TTBK1Q5TCY1 1321 aaPredicted RBP20.9■□□□□ 0.94
SCN8A-215ENST00000638820 RAD54L2Q9Y4B4 1467 aa20.89■□□□□ 0.93
SCN8A-215ENST00000638820 DNMBPQ6XZF7 1577 aa20.86■□□□□ 0.93
SCN8A-215ENST00000638820 TDRD9Q8NDG6 1382 aaKnown RBP20.85■□□□□ 0.93
SCN8A-215ENST00000638820 PCGF6Q9BYE7 350 aa20.85■□□□□ 0.93
SCN8A-215ENST00000638820 POLA1P09884 1462 aaPredicted RBP20.83■□□□□ 0.93
SCN8A-215ENST00000638820 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.93
SCN8A-215ENST00000638820 TNIKQ9UKE5 1360 aa20.83■□□□□ 0.92
SCN8A-215ENST00000638820 APLP2Q06481 763 aa20.8■□□□□ 0.92
SCN8A-215ENST00000638820 RAPGEF2Q9Y4G8 1499 aa20.8■□□□□ 0.92
SCN8A-215ENST00000638820 CEP162Q5TB80 1403 aa20.8■□□□□ 0.92
SCN8A-215ENST00000638820 KIF21AQ7Z4S6 1674 aa20.79■□□□□ 0.92
SCN8A-215ENST00000638820 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.92
SCN8A-215ENST00000638820 MRC2Q9UBG0 1479 aa20.76■□□□□ 0.91
SCN8A-215ENST00000638820 IGF1RP08069 1367 aa20.74■□□□□ 0.91
SCN8A-215ENST00000638820 CLIP1P30622 1438 aa20.7■□□□□ 0.9
SCN8A-215ENST00000638820 FBLN2P98095 1184 aa20.69■□□□□ 0.9
SCN8A-215ENST00000638820 ATP1B4Q9UN42 357 aaPredicted RBP20.67■□□□□ 0.9
SCN8A-215ENST00000638820 KIF21BO75037 1637 aa20.65■□□□□ 0.9
SCN8A-215ENST00000638820 ABCA10Q8WWZ4 1543 aa20.65■□□□□ 0.9
SCN8A-215ENST00000638820 P3H3Q8IVL6 736 aa20.65■□□□□ 0.9
SCN8A-215ENST00000638820 PRXQ9BXM0 1461 aa20.63■□□□□ 0.89
SCN8A-215ENST00000638820 GAPVD1Q14C86 1478 aa20.63■□□□□ 0.89
SCN8A-215ENST00000638820 TRIM26Q12899 539 aaPredicted RBP20.62■□□□□ 0.89
SCN8A-215ENST00000638820 AQRO60306 1485 aaKnown RBP eCLIP20.61■□□□□ 0.89
SCN8A-215ENST00000638820 ERICH3Q5RHP9 1530 aa20.54■□□□□ 0.88
SCN8A-215ENST00000638820 CHMP7Q8WUX9 453 aaPredicted RBP20.53■□□□□ 0.88
SCN8A-215ENST00000638820 IFT140Q96RY7 1462 aa20.51■□□□□ 0.87
SCN8A-215ENST00000638820 ZNF608Q9ULD9 1512 aaPredicted RBP20.47■□□□□ 0.87
SCN8A-215ENST00000638820 WDR62O43379 1518 aa20.46■□□□□ 0.87
SCN8A-215ENST00000638820 GRIN2BQ13224 1484 aa20.43■□□□□ 0.86
SCN8A-215ENST00000638820 VPS8Q8N3P4 1428 aa20.39■□□□□ 0.86
SCN8A-215ENST00000638820 TARBP1Q13395 1621 aaKnown RBP20.39■□□□□ 0.85
SCN8A-215ENST00000638820 FHAD1B1AJZ9 1412 aa20.36■□□□□ 0.85
SCN8A-215ENST00000638820 CUL7Q14999 1698 aa20.35■□□□□ 0.85
SCN8A-215ENST00000638820 THOC2Q8NI27 1593 aaKnown RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms