RNA–Protein interactions for RNA: ENST00000621526.4

CPNE3-211, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 279 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-211ENST00000621526 NISCHQ9Y2I1 1504 aa6.16□□□□□ -1.42
CPNE3-211ENST00000621526 DNAJC5BQ9UF47 199 aa5.97□□□□□ -1.45
CPNE3-211ENST00000621526 ABCC9O60706 1549 aa5.93□□□□□ -1.46
CPNE3-211ENST00000621526 DNAJC5Q9H3Z4 198 aa5.77□□□□□ -1.49
CPNE3-211ENST00000621526 PABPN1Q86U42 306 aaKnown RBP eCLIP5.57□□□□□ -1.52
CPNE3-211ENST00000621526 CCDC180Q9P1Z9 1646 aa5.53□□□□□ -1.52
CPNE3-211ENST00000621526 RB1CC1Q8TDY2 1594 aa5.5□□□□□ -1.53
CPNE3-211ENST00000621526 DCAF8L2P0C7V8 631 aa5.43□□□□□ -1.54
CPNE3-211ENST00000621526 NACADO15069 1562 aa5.42□□□□□ -1.54
CPNE3-211ENST00000621526 CECR2Q9BXF3 1484 aa5.41□□□□□ -1.54
CPNE3-211ENST00000621526 BICRAQ9NZM4 1560 aa5.32□□□□□ -1.56
CPNE3-211ENST00000621526 MYO15BQ96JP2 1530 aa5.32□□□□□ -1.56
CPNE3-211ENST00000621526 SHROOM4Q9ULL8 1493 aa5.32□□□□□ -1.56
CPNE3-211ENST00000621526 CC2D2AQ9P2K1 1620 aa5.3□□□□□ -1.56
CPNE3-211ENST00000621526 CUX2O14529 1486 aa5.28□□□□□ -1.56
CPNE3-211ENST00000621526 TRIM41Q8WV44 630 aa5.28□□□□□ -1.56
CPNE3-211ENST00000621526 EIF4G1Q04637 1599 aaKnown RBP5.23□□□□□ -1.57
CPNE3-211ENST00000621526 UNC13AQ9UPW8 1703 aa5.16□□□□□ -1.58
CPNE3-211ENST00000621526 ERCC6Q03468 1493 aa5.15□□□□□ -1.58
CPNE3-211ENST00000621526 OSCARQ8IYS5 282 aa5.13□□□□□ -1.59
CPNE3-211ENST00000621526 AEBP2Q6ZN18 517 aaPredicted RBP5.1□□□□□ -1.59
CPNE3-211ENST00000621526 DCAF1Q9Y4B6 1507 aa5.1□□□□□ -1.59
CPNE3-211ENST00000621526 SCRIBQ14160 1630 aa5.09□□□□□ -1.59
CPNE3-211ENST00000621526 NCAPD3P42695 1498 aa5.09□□□□□ -1.59
CPNE3-211ENST00000621526 PDS5BQ9NTI5 1447 aa5.01□□□□□ -1.61
CPNE3-211ENST00000621526 TRHP20396 242 aaPredicted RBP5.01□□□□□ -1.61
CPNE3-211ENST00000621526 ZCCHC6Q5VYS8 1495 aaKnown RBP5□□□□□ -1.61
CPNE3-211ENST00000621526 NESP48681 1621 aa4.98□□□□□ -1.61
CPNE3-211ENST00000621526 CYB5RLQ6IPT4 315 aa4.98□□□□□ -1.61
CPNE3-211ENST00000621526 ATAD2BQ9ULI0 1458 aa4.98□□□□□ -1.61
CPNE3-211ENST00000621526 CADPSQ9ULU8 1353 aa4.93□□□□□ -1.62
CPNE3-211ENST00000621526 ILDR1Q86SU0 546 aaPredicted RBP4.93□□□□□ -1.62
CPNE3-211ENST00000621526 THOC2Q8NI27 1593 aaKnown RBP4.91□□□□□ -1.62
CPNE3-211ENST00000621526 LAMC3Q9Y6N6 1575 aa4.91□□□□□ -1.62
CPNE3-211ENST00000621526 HMGXB3Q12766 1538 aa4.91□□□□□ -1.62
CPNE3-211ENST00000621526 SMARCA2P51531 1590 aa4.91□□□□□ -1.62
CPNE3-211ENST00000621526 MRC2Q9UBG0 1479 aa4.89□□□□□ -1.63
CPNE3-211ENST00000621526 BAZ1BQ9UIG0 1483 aaKnown RBP4.87□□□□□ -1.63
CPNE3-211ENST00000621526 ARHGEF11O15085 1522 aa4.86□□□□□ -1.63
CPNE3-211ENST00000621526 WDR62O43379 1518 aa4.86□□□□□ -1.63
CPNE3-211ENST00000621526 BAZ1AQ9NRL2 1556 aaPredicted RBP4.86□□□□□ -1.63
CPNE3-211ENST00000621526 RIMBP3CA6NJZ7 1639 aa4.84□□□□□ -1.63
CPNE3-211ENST00000621526 RIMBP3BA6NNM3 1639 aa4.84□□□□□ -1.63
CPNE3-211ENST00000621526 RIMBP3Q9UFD9 1639 aa4.84□□□□□ -1.63
CPNE3-211ENST00000621526 RSF1Q96T23 1441 aaPredicted RBP4.81□□□□□ -1.64
CPNE3-211ENST00000621526 PEG3Q9GZU2 1588 aa4.8□□□□□ -1.64
CPNE3-211ENST00000621526 CEP164Q9UPV0 1460 aa4.8□□□□□ -1.64
CPNE3-211ENST00000621526 ARAP1Q96P48 1450 aa4.79□□□□□ -1.64
CPNE3-211ENST00000621526 FANCD2Q9BXW9 1451 aa4.79□□□□□ -1.64
CPNE3-211ENST00000621526 FBLN2P98095 1184 aa4.78□□□□□ -1.64
CPNE3-211ENST00000621526 SMARCA4P51532 1647 aa4.78□□□□□ -1.64
CPNE3-211ENST00000621526 CFTRP13569 1480 aa4.77□□□□□ -1.65
CPNE3-211ENST00000621526 KDM4FA0A1W2PPD8 638 aa4.77□□□□□ -1.65
CPNE3-211ENST00000621526 KIF21AQ7Z4S6 1674 aa4.77□□□□□ -1.65
CPNE3-211ENST00000621526 IFT140Q96RY7 1462 aa4.76□□□□□ -1.65
CPNE3-211ENST00000621526 URB2Q14146 1524 aaKnown RBP4.74□□□□□ -1.65
CPNE3-211ENST00000621526 ZNF608Q9ULD9 1512 aaPredicted RBP4.74□□□□□ -1.65
CPNE3-211ENST00000621526 FBXO41Q8TF61 875 aa4.74□□□□□ -1.65
CPNE3-211ENST00000621526 CHMP7Q8WUX9 453 aaPredicted RBP4.74□□□□□ -1.65
CPNE3-211ENST00000621526 MROH2BQ7Z745 1585 aa4.73□□□□□ -1.65
CPNE3-211ENST00000621526 AQRO60306 1485 aaKnown RBP eCLIP4.71□□□□□ -1.666e-8■■■■■ 35.8
CPNE3-211ENST00000621526 ABCC8Q09428 1581 aa4.7□□□□□ -1.66
CPNE3-211ENST00000621526 SOCS7O14512 581 aa4.68□□□□□ -1.66
CPNE3-211ENST00000621526 FAM69CQ0P6D2 419 aa4.68□□□□□ -1.66
CPNE3-211ENST00000621526 GAPVD1Q14C86 1478 aa4.67□□□□□ -1.66
CPNE3-211ENST00000621526 NPM1P06748 294 aaKnown RBP eCLIP4.66□□□□□ -1.66
CPNE3-211ENST00000621526 TDRD9Q8NDG6 1382 aaKnown RBP4.65□□□□□ -1.66
CPNE3-211ENST00000621526 TOPBP1Q92547 1522 aa4.65□□□□□ -1.67
CPNE3-211ENST00000621526 SOGA1O94964 1423 aa4.63□□□□□ -1.67
CPNE3-211ENST00000621526 CLASP1Q7Z460 1538 aa4.62□□□□□ -1.67
CPNE3-211ENST00000621526 LMTK3Q96Q04 1460 aa4.61□□□□□ -1.67
CPNE3-211ENST00000621526 MAGI1Q96QZ7 1491 aaPredicted RBP4.61□□□□□ -1.67
CPNE3-211ENST00000621526 SYNJ1O43426 1573 aa4.61□□□□□ -1.67
CPNE3-211ENST00000621526 JPH4Q96JJ6 628 aa4.6□□□□□ -1.67
CPNE3-211ENST00000621526 SYNJ2O15056 1496 aa4.6□□□□□ -1.67
CPNE3-211ENST00000621526 ABCC10Q5T3U5 1492 aa4.6□□□□□ -1.67
CPNE3-211ENST00000621526 EIF4G3O43432 1585 aaKnown RBP4.59□□□□□ -1.67
CPNE3-211ENST00000621526 GRIN2BQ13224 1484 aa4.59□□□□□ -1.67
CPNE3-211ENST00000621526 ILDR2Q71H61 639 aa4.59□□□□□ -1.67
CPNE3-211ENST00000621526 POLA1P09884 1462 aaPredicted RBP4.58□□□□□ -1.68
CPNE3-211ENST00000621526 SNAPC4Q5SXM2 1469 aa4.58□□□□□ -1.68
CPNE3-211ENST00000621526 RAD54L2Q9Y4B4 1467 aa4.58□□□□□ -1.68
CPNE3-211ENST00000621526 TARBP1Q13395 1621 aaKnown RBP4.57□□□□□ -1.68
CPNE3-211ENST00000621526 ERCC6L2Q5T890 1561 aa4.57□□□□□ -1.68
CPNE3-211ENST00000621526 DNMBPQ6XZF7 1577 aa4.57□□□□□ -1.68
CPNE3-211ENST00000621526 CCDC88BA6NC98 1476 aa4.56□□□□□ -1.68
CPNE3-211ENST00000621526 CHD1O14646 1710 aa4.55□□□□□ -1.68
CPNE3-211ENST00000621526 WIZO95785 1651 aa4.55□□□□□ -1.68
CPNE3-211ENST00000621526 DISP3Q9P2K9 1392 aa4.54□□□□□ -1.68
CPNE3-211ENST00000621526 WDR97A6NE52 1622 aa4.54□□□□□ -1.68
CPNE3-211ENST00000621526 TOP2AP11388 1531 aaKnown RBP4.53□□□□□ -1.68
CPNE3-211ENST00000621526 CERKQ8TCT0 537 aa4.53□□□□□ -1.68
CPNE3-211ENST00000621526 ADGRL1O94910 1474 aa4.53□□□□□ -1.68
CPNE3-211ENST00000621526 NUP160Q12769 1436 aa4.53□□□□□ -1.68
CPNE3-211ENST00000621526 PRG4Q92954 1404 aaPredicted RBP4.53□□□□□ -1.68
CPNE3-211ENST00000621526 HECW2Q9P2P5 1572 aa4.52□□□□□ -1.69
CPNE3-211ENST00000621526 MAPKBP1O60336 1514 aa4.51□□□□□ -1.69
CPNE3-211ENST00000621526 KDM6BO15054 1643 aa4.5□□□□□ -1.69
CPNE3-211ENST00000621526 GRIN2AQ12879 1464 aa4.49□□□□□ -1.69
CPNE3-211ENST00000621526 FGD5Q6ZNL6 1462 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms