RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 NISCHQ9Y2I1 1504 aa26.49■■□□□ 1.83
CIITA-212ENST00000618207 SHROOM4Q9ULL8 1493 aa22.62■■□□□ 1.21
CIITA-212ENST00000618207 CCDC180Q9P1Z9 1646 aa22.6■■□□□ 1.21
CIITA-212ENST00000618207 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
CIITA-212ENST00000618207 ZCCHC6Q5VYS8 1495 aaKnown RBP22.3■■□□□ 1.16
CIITA-212ENST00000618207 SUPT5HO00267 1087 aaKnown RBP22.01■■□□□ 1.11
CIITA-212ENST00000618207 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
CIITA-212ENST00000618207 ABCC9O60706 1549 aa21.54■■□□□ 1.04
CIITA-212ENST00000618207 SCRIBQ14160 1630 aa21.33■■□□□ 1.01
CIITA-212ENST00000618207 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
CIITA-212ENST00000618207 CHIC1Q5VXU3 224 aa21.05■□□□□ 0.96
CIITA-212ENST00000618207 NACADO15069 1562 aa21.03■□□□□ 0.96
CIITA-212ENST00000618207 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
CIITA-212ENST00000618207 RB1CC1Q8TDY2 1594 aa20.82■□□□□ 0.92
CIITA-212ENST00000618207 CECR2Q9BXF3 1484 aa20.8■□□□□ 0.92
CIITA-212ENST00000618207 MROH2BQ7Z745 1585 aa20.64■□□□□ 0.9
CIITA-212ENST00000618207 PABPN1Q86U42 306 aaKnown RBP eCLIP20.6■□□□□ 0.89
CIITA-212ENST00000618207 LOC105371045A0A1W2PR82 267 aa20.54■□□□□ 0.88
CIITA-212ENST00000618207 WIZO95785 1651 aa20.53■□□□□ 0.88
CIITA-212ENST00000618207 UNC13AQ9UPW8 1703 aa20.52■□□□□ 0.88
CIITA-212ENST00000618207 TRIM41Q8WV44 630 aa20.44■□□□□ 0.86
CIITA-212ENST00000618207 FAM9AQ8IZU1 332 aaPredicted RBP20.41■□□□□ 0.86
CIITA-212ENST00000618207 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
CIITA-212ENST00000618207 EHMT2Q96KQ7 1210 aa20.37■□□□□ 0.85
CIITA-212ENST00000618207 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
CIITA-212ENST00000618207 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
CIITA-212ENST00000618207 PCGF6Q9BYE7 350 aa20.14■□□□□ 0.82
CIITA-212ENST00000618207 TOP2AP11388 1531 aaKnown RBP20.1■□□□□ 0.81
CIITA-212ENST00000618207 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
CIITA-212ENST00000618207 SMARCA2P51531 1590 aa20.01■□□□□ 0.79
CIITA-212ENST00000618207 ABCC8Q09428 1581 aa19.99■□□□□ 0.79
CIITA-212ENST00000618207 EIF4G1Q04637 1599 aaKnown RBP19.92■□□□□ 0.78
CIITA-212ENST00000618207 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
CIITA-212ENST00000618207 BAZ1BQ9UIG0 1483 aaKnown RBP19.82■□□□□ 0.76
CIITA-212ENST00000618207 PEG3Q9GZU2 1588 aa19.78■□□□□ 0.76
CIITA-212ENST00000618207 PPARGC1BQ86YN6 1023 aaKnown RBP19.76■□□□□ 0.75
CIITA-212ENST00000618207 SOGA1O94964 1423 aa19.72■□□□□ 0.75
CIITA-212ENST00000618207 HRCP23327 699 aa19.72■□□□□ 0.75
CIITA-212ENST00000618207 TRIM26Q12899 539 aaPredicted RBP19.71■□□□□ 0.74
CIITA-212ENST00000618207 RUSC2Q8N2Y8 1516 aa19.66■□□□□ 0.74
CIITA-212ENST00000618207 WRNQ14191 1432 aaPredicted RBP eCLIP19.64■□□□□ 0.73
CIITA-212ENST00000618207 UBTFP17480 764 aaKnown RBP19.59■□□□□ 0.73
CIITA-212ENST00000618207 TTBK1Q5TCY1 1321 aaPredicted RBP19.58■□□□□ 0.72
CIITA-212ENST00000618207 CSRNP3Q8WYN3 585 aa19.57■□□□□ 0.72
CIITA-212ENST00000618207 SYNJ1O43426 1573 aa19.54■□□□□ 0.72
CIITA-212ENST00000618207 NCAPD3P42695 1498 aa19.49■□□□□ 0.71
CIITA-212ENST00000618207 RANGAP1P46060 587 aaPredicted RBP19.46■□□□□ 0.71
CIITA-212ENST00000618207 HMGXB3Q12766 1538 aa19.41■□□□□ 0.7
CIITA-212ENST00000618207 CEP162Q5TB80 1403 aa19.41■□□□□ 0.7
CIITA-212ENST00000618207 EEA1Q15075 1411 aa19.39■□□□□ 0.69
CIITA-212ENST00000618207 TNIKQ9UKE5 1360 aa19.34■□□□□ 0.69
CIITA-212ENST00000618207 GOLGA3Q08378 1498 aa19.32■□□□□ 0.68
CIITA-212ENST00000618207 CC2D2AQ9P2K1 1620 aa19.29■□□□□ 0.68
CIITA-212ENST00000618207 TOP2BQ02880 1626 aa19.27■□□□□ 0.67
CIITA-212ENST00000618207 CFTRP13569 1480 aa19.25■□□□□ 0.67
CIITA-212ENST00000618207 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
CIITA-212ENST00000618207 RAPGEF2Q9Y4G8 1499 aa19.23■□□□□ 0.67
CIITA-212ENST00000618207 CUX1P39880 1505 aa19.22■□□□□ 0.67
CIITA-212ENST00000618207 BIVM-ERCC5R4GMW8 1640 aa19.17■□□□□ 0.66
CIITA-212ENST00000618207 CADPSQ9ULU8 1353 aa19.16■□□□□ 0.66
CIITA-212ENST00000618207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.15■□□□□ 0.66
CIITA-212ENST00000618207 CLIP1P30622 1438 aa19.15■□□□□ 0.66
CIITA-212ENST00000618207 KIF21BO75037 1637 aa19.14■□□□□ 0.65
CIITA-212ENST00000618207 DNAJC5BQ9UF47 199 aa19.1■□□□□ 0.65
CIITA-212ENST00000618207 PELP1Q8IZL8 1130 aaKnown RBP19.08■□□□□ 0.64
CIITA-212ENST00000618207 KIF27Q86VH2 1401 aa19.06■□□□□ 0.64
CIITA-212ENST00000618207 NESP48681 1621 aa19.06■□□□□ 0.64
CIITA-212ENST00000618207 CCER1Q8TC90 406 aaPredicted RBP19.04■□□□□ 0.64
CIITA-212ENST00000618207 APLP2Q06481 763 aa19.03■□□□□ 0.64
CIITA-212ENST00000618207 ZEB1P37275 1124 aaPredicted RBP19.02■□□□□ 0.64
CIITA-212ENST00000618207 CUX2O14529 1486 aa19.01■□□□□ 0.63
CIITA-212ENST00000618207 PRDM2Q13029 1718 aa19■□□□□ 0.63
CIITA-212ENST00000618207 FANCD2Q9BXW9 1451 aa18.99■□□□□ 0.63
CIITA-212ENST00000618207 PRXQ9BXM0 1461 aa18.98■□□□□ 0.63
CIITA-212ENST00000618207 FGD5Q6ZNL6 1462 aa18.98■□□□□ 0.63
CIITA-212ENST00000618207 VPS8Q8N3P4 1428 aa18.96■□□□□ 0.62
CIITA-212ENST00000618207 HNRNPUL2Q1KMD3 747 aaKnown RBP18.95■□□□□ 0.62
CIITA-212ENST00000618207 ERICH3Q5RHP9 1530 aa18.89■□□□□ 0.62
CIITA-212ENST00000618207 IGF1RP08069 1367 aa18.89■□□□□ 0.61
CIITA-212ENST00000618207 RAD54L2Q9Y4B4 1467 aa18.89■□□□□ 0.61
CIITA-212ENST00000618207 CARMIL1Q5VZK9 1371 aa18.84■□□□□ 0.61
CIITA-212ENST00000618207 P3H3Q8IVL6 736 aa18.82■□□□□ 0.6
CIITA-212ENST00000618207 ARAP1Q96P48 1450 aa18.82■□□□□ 0.6
CIITA-212ENST00000618207 KANK4Q5T7N3 995 aaPredicted RBP18.81■□□□□ 0.6
CIITA-212ENST00000618207 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
CIITA-212ENST00000618207 POLA1P09884 1462 aaPredicted RBP18.78■□□□□ 0.6
CIITA-212ENST00000618207 DNMBPQ6XZF7 1577 aa18.76■□□□□ 0.59
CIITA-212ENST00000618207 MYT1Q01538 1121 aa18.76■□□□□ 0.59
CIITA-212ENST00000618207 ATP1B4Q9UN42 357 aaPredicted RBP18.76■□□□□ 0.59
CIITA-212ENST00000618207 ARHGAP35Q9NRY4 1499 aa18.75■□□□□ 0.59
CIITA-212ENST00000618207 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
CIITA-212ENST00000618207 URB2Q14146 1524 aaKnown RBP18.72■□□□□ 0.59
CIITA-212ENST00000618207 LAMC3Q9Y6N6 1575 aa18.71■□□□□ 0.59
CIITA-212ENST00000618207 PDS5BQ9NTI5 1447 aa18.68■□□□□ 0.58
CIITA-212ENST00000618207 ITGAEP38570 1179 aa18.67■□□□□ 0.58
CIITA-212ENST00000618207 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
CIITA-212ENST00000618207 KIF21AQ7Z4S6 1674 aa18.64■□□□□ 0.58
CIITA-212ENST00000618207 FHOD3Q2V2M9 1422 aa18.57■□□□□ 0.56
CIITA-212ENST00000618207 GAPVD1Q14C86 1478 aa18.54■□□□□ 0.56
CIITA-212ENST00000618207 AQRO60306 1485 aaKnown RBP eCLIP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms