RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 NISCHQ9Y2I1 1504 aa17.2■□□□□ 0.34
NEK3-207ENST00000617054 CHIC1Q5VXU3 224 aa15.11■□□□□ 0.01
NEK3-207ENST00000617054 AEBP2Q6ZN18 517 aaPredicted RBP15.06■□□□□ 0
NEK3-207ENST00000617054 CCDC180Q9P1Z9 1646 aa14.75□□□□□ -0.05
NEK3-207ENST00000617054 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
NEK3-207ENST00000617054 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
NEK3-207ENST00000617054 ZCCHC6Q5VYS8 1495 aaKnown RBP14.43□□□□□ -0.1
NEK3-207ENST00000617054 ABCC9O60706 1549 aa14.24□□□□□ -0.13
NEK3-207ENST00000617054 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
NEK3-207ENST00000617054 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
NEK3-207ENST00000617054 PHF23Q9BUL5 403 aaPredicted RBP13.89□□□□□ -0.19
NEK3-207ENST00000617054 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
NEK3-207ENST00000617054 NACADO15069 1562 aa13.79□□□□□ -0.2
NEK3-207ENST00000617054 MYO15BQ96JP2 1530 aa13.78□□□□□ -0.2
NEK3-207ENST00000617054 RB1CC1Q8TDY2 1594 aa13.68□□□□□ -0.22
NEK3-207ENST00000617054 PABPN1Q86U42 306 aaKnown RBP eCLIP13.58□□□□□ -0.248e-7■■□□□ 13.3
NEK3-207ENST00000617054 CECR2Q9BXF3 1484 aa13.51□□□□□ -0.25
NEK3-207ENST00000617054 UNC13AQ9UPW8 1703 aa13.48□□□□□ -0.25
NEK3-207ENST00000617054 RSF1Q96T23 1441 aaPredicted RBP13.46□□□□□ -0.25
NEK3-207ENST00000617054 EHMT2Q96KQ7 1210 aa13.45□□□□□ -0.26
NEK3-207ENST00000617054 MROH2BQ7Z745 1585 aa13.39□□□□□ -0.27
NEK3-207ENST00000617054 BICRAQ9NZM4 1560 aa13.35□□□□□ -0.27
NEK3-207ENST00000617054 WIZO95785 1651 aa13.29□□□□□ -0.28
NEK3-207ENST00000617054 BAZ1AQ9NRL2 1556 aaPredicted RBP13.22□□□□□ -0.29
NEK3-207ENST00000617054 SMARCA4P51532 1647 aa13.18□□□□□ -0.3
NEK3-207ENST00000617054 TRIM41Q8WV44 630 aa13.02□□□□□ -0.33
NEK3-207ENST00000617054 CCDC88BA6NC98 1476 aa13.01□□□□□ -0.33
NEK3-207ENST00000617054 TOP2AP11388 1531 aaKnown RBP13.01□□□□□ -0.33
NEK3-207ENST00000617054 ATAD2BQ9ULI0 1458 aa12.99□□□□□ -0.33
NEK3-207ENST00000617054 LOC105371045A0A1W2PR82 267 aa12.98□□□□□ -0.33
NEK3-207ENST00000617054 FAM9AQ8IZU1 332 aaPredicted RBP12.98□□□□□ -0.33
NEK3-207ENST00000617054 SMARCA2P51531 1590 aa12.95□□□□□ -0.34
NEK3-207ENST00000617054 EIF4G1Q04637 1599 aaKnown RBP12.94□□□□□ -0.34
NEK3-207ENST00000617054 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
NEK3-207ENST00000617054 PEG3Q9GZU2 1588 aa12.9□□□□□ -0.34
NEK3-207ENST00000617054 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
NEK3-207ENST00000617054 NCAPD3P42695 1498 aa12.79□□□□□ -0.36
NEK3-207ENST00000617054 PLPPR3Q6T4P5 718 aa12.79□□□□□ -0.36
NEK3-207ENST00000617054 CC2D2AQ9P2K1 1620 aa12.76□□□□□ -0.37
NEK3-207ENST00000617054 KCNA4P22459 653 aa12.76□□□□□ -0.37
NEK3-207ENST00000617054 DNAJC5BQ9UF47 199 aa12.73□□□□□ -0.37
NEK3-207ENST00000617054 HMGXB3Q12766 1538 aa12.71□□□□□ -0.37
NEK3-207ENST00000617054 WRNQ14191 1432 aaPredicted RBP eCLIP12.66□□□□□ -0.38
NEK3-207ENST00000617054 SOGA1O94964 1423 aa12.65□□□□□ -0.38
NEK3-207ENST00000617054 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
NEK3-207ENST00000617054 ADRA2BP18089 450 aa12.63□□□□□ -0.39
NEK3-207ENST00000617054 SYNJ1O43426 1573 aa12.61□□□□□ -0.39
NEK3-207ENST00000617054 CFTRP13569 1480 aa12.57□□□□□ -0.4
NEK3-207ENST00000617054 SLC24A1O60721 1099 aa12.56□□□□□ -0.4
NEK3-207ENST00000617054 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
NEK3-207ENST00000617054 NESP48681 1621 aa12.54□□□□□ -0.4
NEK3-207ENST00000617054 CSRNP3Q8WYN3 585 aa12.53□□□□□ -0.4
NEK3-207ENST00000617054 UBTFP17480 764 aaKnown RBP12.49□□□□□ -0.41
NEK3-207ENST00000617054 PPARGC1BQ86YN6 1023 aaKnown RBP12.48□□□□□ -0.41
NEK3-207ENST00000617054 CUX1P39880 1505 aa12.48□□□□□ -0.41
NEK3-207ENST00000617054 PCGF6Q9BYE7 350 aa12.48□□□□□ -0.41
NEK3-207ENST00000617054 RANGAP1P46060 587 aaPredicted RBP12.47□□□□□ -0.41
NEK3-207ENST00000617054 TOP2BQ02880 1626 aa12.45□□□□□ -0.42
NEK3-207ENST00000617054 FANCD2Q9BXW9 1451 aa12.42□□□□□ -0.42
NEK3-207ENST00000617054 BIVM-ERCC5R4GMW8 1640 aa12.39□□□□□ -0.43
NEK3-207ENST00000617054 TTBK1Q5TCY1 1321 aaPredicted RBP12.38□□□□□ -0.43
NEK3-207ENST00000617054 EEA1Q15075 1411 aa12.38□□□□□ -0.43
NEK3-207ENST00000617054 PRDM2Q13029 1718 aa12.36□□□□□ -0.43
NEK3-207ENST00000617054 RAPGEF2Q9Y4G8 1499 aa12.34□□□□□ -0.43
NEK3-207ENST00000617054 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
NEK3-207ENST00000617054 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
NEK3-207ENST00000617054 GOLGA3Q08378 1498 aa12.32□□□□□ -0.44
NEK3-207ENST00000617054 RAD54L2Q9Y4B4 1467 aa12.32□□□□□ -0.44
NEK3-207ENST00000617054 TNIKQ9UKE5 1360 aa12.31□□□□□ -0.44
NEK3-207ENST00000617054 CUX2O14529 1486 aa12.31□□□□□ -0.44
NEK3-207ENST00000617054 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
NEK3-207ENST00000617054 LAMC3Q9Y6N6 1575 aa12.3□□□□□ -0.44
NEK3-207ENST00000617054 CEP164Q9UPV0 1460 aa12.3□□□□□ -0.44
NEK3-207ENST00000617054 KIF27Q86VH2 1401 aa12.3□□□□□ -0.44
NEK3-207ENST00000617054 TOPBP1Q92547 1522 aa12.28□□□□□ -0.44
NEK3-207ENST00000617054 PDS5BQ9NTI5 1447 aa12.28□□□□□ -0.44
NEK3-207ENST00000617054 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.45
NEK3-207ENST00000617054 TRIM26Q12899 539 aaPredicted RBP12.26□□□□□ -0.45
NEK3-207ENST00000617054 KIF21AQ7Z4S6 1674 aa12.26□□□□□ -0.45
NEK3-207ENST00000617054 POLA1P09884 1462 aaPredicted RBP12.25□□□□□ -0.45
NEK3-207ENST00000617054 IGF1RP08069 1367 aa12.25□□□□□ -0.45
NEK3-207ENST00000617054 KIF21BO75037 1637 aa12.24□□□□□ -0.45
NEK3-207ENST00000617054 DNMBPQ6XZF7 1577 aa12.23□□□□□ -0.45
NEK3-207ENST00000617054 TDRD9Q8NDG6 1382 aaKnown RBP12.22□□□□□ -0.45
NEK3-207ENST00000617054 PRXQ9BXM0 1461 aa12.22□□□□□ -0.45
NEK3-207ENST00000617054 CLIP1P30622 1438 aa12.2□□□□□ -0.46
NEK3-207ENST00000617054 CARMIL1Q5VZK9 1371 aa12.18□□□□□ -0.46
NEK3-207ENST00000617054 ABCA10Q8WWZ4 1543 aa12.14□□□□□ -0.47
NEK3-207ENST00000617054 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
NEK3-207ENST00000617054 PPP6R1Q9UPN7 881 aa12.14□□□□□ -0.47
NEK3-207ENST00000617054 ERCC6Q03468 1493 aa12.14□□□□□ -0.47
NEK3-207ENST00000617054 ERICH3Q5RHP9 1530 aa12.12□□□□□ -0.47
NEK3-207ENST00000617054 AQRO60306 1485 aaKnown RBP eCLIP12.11□□□□□ -0.473e-8■□□□□ 10.5
NEK3-207ENST00000617054 MRC2Q9UBG0 1479 aa12.1□□□□□ -0.47
NEK3-207ENST00000617054 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
NEK3-207ENST00000617054 ARAP1Q96P48 1450 aa12.06□□□□□ -0.48
NEK3-207ENST00000617054 APLP2Q06481 763 aa12.06□□□□□ -0.48
NEK3-207ENST00000617054 ZNF608Q9ULD9 1512 aaPredicted RBP12.06□□□□□ -0.48
NEK3-207ENST00000617054 VPS8Q8N3P4 1428 aa12.06□□□□□ -0.48
NEK3-207ENST00000617054 HRCP23327 699 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms