RNA–Protein interactions for RNA: ENST00000616887.1

PCDHGA9-202, Transcript of protocadherin gamma subfamily A, 9, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGA9, Length 2,568 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9-202ENST00000616887 NISCHQ9Y2I1 1504 aa24.54■■□□□ 1.52
PCDHGA9-202ENST00000616887 CCDC180Q9P1Z9 1646 aa21.42■■□□□ 1.02
PCDHGA9-202ENST00000616887 SHROOM4Q9ULL8 1493 aa20.74■□□□□ 0.91
PCDHGA9-202ENST00000616887 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
PCDHGA9-202ENST00000616887 ABCC9O60706 1549 aa20.67■□□□□ 0.9
PCDHGA9-202ENST00000616887 DCAF8L2P0C7V8 631 aa20.52■□□□□ 0.88
PCDHGA9-202ENST00000616887 DCAF1Q9Y4B6 1507 aa20.33■□□□□ 0.84
PCDHGA9-202ENST00000616887 MYO15BQ96JP2 1530 aa20.11■□□□□ 0.81
PCDHGA9-202ENST00000616887 SUPT5HO00267 1087 aaKnown RBP20.1■□□□□ 0.81
PCDHGA9-202ENST00000616887 NACADO15069 1562 aa19.99■□□□□ 0.79
PCDHGA9-202ENST00000616887 RB1CC1Q8TDY2 1594 aa19.96■□□□□ 0.79
PCDHGA9-202ENST00000616887 SCRIBQ14160 1630 aa19.71■□□□□ 0.75
PCDHGA9-202ENST00000616887 UNC13AQ9UPW8 1703 aa19.55■□□□□ 0.72
PCDHGA9-202ENST00000616887 PABPN1Q86U42 306 aaKnown RBP eCLIP19.38■□□□□ 0.69
PCDHGA9-202ENST00000616887 BICRAQ9NZM4 1560 aa19.36■□□□□ 0.69
PCDHGA9-202ENST00000616887 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
PCDHGA9-202ENST00000616887 RSF1Q96T23 1441 aaPredicted RBP19.29■□□□□ 0.68
PCDHGA9-202ENST00000616887 CECR2Q9BXF3 1484 aa19.23■□□□□ 0.67
PCDHGA9-202ENST00000616887 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
PCDHGA9-202ENST00000616887 WIZO95785 1651 aa18.97■□□□□ 0.63
PCDHGA9-202ENST00000616887 BAZ1AQ9NRL2 1556 aaPredicted RBP18.94■□□□□ 0.62
PCDHGA9-202ENST00000616887 EIF4G1Q04637 1599 aaKnown RBP18.83■□□□□ 0.61
PCDHGA9-202ENST00000616887 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
PCDHGA9-202ENST00000616887 LOC105371045A0A1W2PR82 267 aa18.77■□□□□ 0.6
PCDHGA9-202ENST00000616887 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
PCDHGA9-202ENST00000616887 HRCP23327 699 aa18.7■□□□□ 0.58
PCDHGA9-202ENST00000616887 TRIM41Q8WV44 630 aa18.7■□□□□ 0.58
PCDHGA9-202ENST00000616887 CC2D2AQ9P2K1 1620 aa18.69■□□□□ 0.58
PCDHGA9-202ENST00000616887 PEG3Q9GZU2 1588 aa18.63■□□□□ 0.57
PCDHGA9-202ENST00000616887 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
PCDHGA9-202ENST00000616887 FAM9AQ8IZU1 332 aaPredicted RBP18.61■□□□□ 0.57
PCDHGA9-202ENST00000616887 CCDC88BA6NC98 1476 aa18.57■□□□□ 0.56
PCDHGA9-202ENST00000616887 SMARCA2P51531 1590 aa18.56■□□□□ 0.56
PCDHGA9-202ENST00000616887 ATAD2BQ9ULI0 1458 aa18.52■□□□□ 0.56
PCDHGA9-202ENST00000616887 EHMT2Q96KQ7 1210 aa18.52■□□□□ 0.56
PCDHGA9-202ENST00000616887 PELP1Q8IZL8 1130 aaKnown RBP18.51■□□□□ 0.55
PCDHGA9-202ENST00000616887 NCAPD3P42695 1498 aa18.45■□□□□ 0.54
PCDHGA9-202ENST00000616887 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
PCDHGA9-202ENST00000616887 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
PCDHGA9-202ENST00000616887 HMGXB3Q12766 1538 aa18.38■□□□□ 0.53
PCDHGA9-202ENST00000616887 PPARGC1BQ86YN6 1023 aaKnown RBP18.37■□□□□ 0.53
PCDHGA9-202ENST00000616887 PCGF6Q9BYE7 350 aa18.32■□□□□ 0.52
PCDHGA9-202ENST00000616887 SOGA1O94964 1423 aa18.18■□□□□ 0.5
PCDHGA9-202ENST00000616887 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
PCDHGA9-202ENST00000616887 RUSC2Q8N2Y8 1516 aa18.12■□□□□ 0.49
PCDHGA9-202ENST00000616887 SYNJ1O43426 1573 aa18.08■□□□□ 0.48
PCDHGA9-202ENST00000616887 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
PCDHGA9-202ENST00000616887 NESP48681 1621 aa17.98■□□□□ 0.47
PCDHGA9-202ENST00000616887 CSRNP3Q8WYN3 585 aa17.96■□□□□ 0.47
PCDHGA9-202ENST00000616887 CFTRP13569 1480 aa17.96■□□□□ 0.47
PCDHGA9-202ENST00000616887 CADPSQ9ULU8 1353 aa17.94■□□□□ 0.46
PCDHGA9-202ENST00000616887 LAMC3Q9Y6N6 1575 aa17.92■□□□□ 0.46
PCDHGA9-202ENST00000616887 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
PCDHGA9-202ENST00000616887 PRDM2Q13029 1718 aa17.9■□□□□ 0.46
PCDHGA9-202ENST00000616887 EEA1Q15075 1411 aa17.88■□□□□ 0.45
PCDHGA9-202ENST00000616887 UBTFP17480 764 aaKnown RBP17.88■□□□□ 0.45
PCDHGA9-202ENST00000616887 CEP162Q5TB80 1403 aa17.87■□□□□ 0.45
PCDHGA9-202ENST00000616887 MYT1Q01538 1121 aa17.86■□□□□ 0.45
PCDHGA9-202ENST00000616887 TOP2BQ02880 1626 aa17.84■□□□□ 0.45
PCDHGA9-202ENST00000616887 TNIKQ9UKE5 1360 aa17.82■□□□□ 0.44
PCDHGA9-202ENST00000616887 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
PCDHGA9-202ENST00000616887 GOLGA3Q08378 1498 aa17.81■□□□□ 0.44
PCDHGA9-202ENST00000616887 CUX1P39880 1505 aa17.81■□□□□ 0.44
PCDHGA9-202ENST00000616887 PDS5BQ9NTI5 1447 aa17.79■□□□□ 0.44
PCDHGA9-202ENST00000616887 ERCC6Q03468 1493 aa17.78■□□□□ 0.44
PCDHGA9-202ENST00000616887 BIVM-ERCC5R4GMW8 1640 aa17.77■□□□□ 0.43
PCDHGA9-202ENST00000616887 KIF21AQ7Z4S6 1674 aa17.76■□□□□ 0.43
PCDHGA9-202ENST00000616887 FANCD2Q9BXW9 1451 aa17.75■□□□□ 0.43
PCDHGA9-202ENST00000616887 CEP164Q9UPV0 1460 aa17.74■□□□□ 0.43
PCDHGA9-202ENST00000616887 RAPGEF2Q9Y4G8 1499 aa17.74■□□□□ 0.43
PCDHGA9-202ENST00000616887 RANGAP1P46060 587 aaPredicted RBP17.72■□□□□ 0.43
PCDHGA9-202ENST00000616887 KIF21BO75037 1637 aa17.7■□□□□ 0.42
PCDHGA9-202ENST00000616887 CLIP1P30622 1438 aa17.61■□□□□ 0.41
PCDHGA9-202ENST00000616887 THOC2Q8NI27 1593 aaKnown RBP17.61■□□□□ 0.41
PCDHGA9-202ENST00000616887 MRC2Q9UBG0 1479 aa17.6■□□□□ 0.41
PCDHGA9-202ENST00000616887 PRXQ9BXM0 1461 aa17.57■□□□□ 0.4
PCDHGA9-202ENST00000616887 KIF27Q86VH2 1401 aa17.57■□□□□ 0.4
PCDHGA9-202ENST00000616887 URB2Q14146 1524 aaKnown RBP17.55■□□□□ 0.4
PCDHGA9-202ENST00000616887 DNMBPQ6XZF7 1577 aa17.55■□□□□ 0.4
PCDHGA9-202ENST00000616887 FGD5Q6ZNL6 1462 aa17.54■□□□□ 0.4
PCDHGA9-202ENST00000616887 CUX2O14529 1486 aa17.54■□□□□ 0.4
PCDHGA9-202ENST00000616887 WDR62O43379 1518 aa17.53■□□□□ 0.4
PCDHGA9-202ENST00000616887 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
PCDHGA9-202ENST00000616887 ERICH3Q5RHP9 1530 aa17.48■□□□□ 0.39
PCDHGA9-202ENST00000616887 VPS8Q8N3P4 1428 aa17.46■□□□□ 0.39
PCDHGA9-202ENST00000616887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
PCDHGA9-202ENST00000616887 RAD54L2Q9Y4B4 1467 aa17.45■□□□□ 0.38
PCDHGA9-202ENST00000616887 IGF1RP08069 1367 aa17.45■□□□□ 0.38
PCDHGA9-202ENST00000616887 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
PCDHGA9-202ENST00000616887 POLA1P09884 1462 aaPredicted RBP17.4■□□□□ 0.38
PCDHGA9-202ENST00000616887 ARAP1Q96P48 1450 aa17.4■□□□□ 0.38
PCDHGA9-202ENST00000616887 AEBP2Q6ZN18 517 aaPredicted RBP17.38■□□□□ 0.37
PCDHGA9-202ENST00000616887 ABCA10Q8WWZ4 1543 aa17.36■□□□□ 0.37
PCDHGA9-202ENST00000616887 CARMIL1Q5VZK9 1371 aa17.36■□□□□ 0.37
PCDHGA9-202ENST00000616887 ACIN1Q9UKV3 1341 aaKnown RBP17.35■□□□□ 0.37
PCDHGA9-202ENST00000616887 APLP2Q06481 763 aa17.32■□□□□ 0.36
PCDHGA9-202ENST00000616887 CCER1Q8TC90 406 aaPredicted RBP17.32■□□□□ 0.36
PCDHGA9-202ENST00000616887 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
PCDHGA9-202ENST00000616887 NEUROD1Q13562 356 aa17.31■□□□□ 0.36
PCDHGA9-202ENST00000616887 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms