RNA–Protein interactions for RNA: ENST00000615135.4

FAM228B-209, Transcript of family with sequence similarity 228 member B, humanhuman

TSL 5

Gene FAM228B, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM228B-209ENST00000615135 AEBP2Q6ZN18 517 aaPredicted RBP20.2■□□□□ 0.82
FAM228B-209ENST00000615135 CHIC1Q5VXU3 224 aa19.96■□□□□ 0.79
FAM228B-209ENST00000615135 NISCHQ9Y2I1 1504 aa18.39■□□□□ 0.53
FAM228B-209ENST00000615135 PHF23Q9BUL5 403 aaPredicted RBP17.74■□□□□ 0.43
FAM228B-209ENST00000615135 ABCC9O60706 1549 aa17.33■□□□□ 0.37
FAM228B-209ENST00000615135 SENP3Q9H4L4 574 aaPredicted RBP17.07■□□□□ 0.32
FAM228B-209ENST00000615135 DNAJC5BQ9UF47 199 aa16.91■□□□□ 0.3
FAM228B-209ENST00000615135 CCDC180Q9P1Z9 1646 aa16.77■□□□□ 0.27
FAM228B-209ENST00000615135 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
FAM228B-209ENST00000615135 RB1CC1Q8TDY2 1594 aa16.26■□□□□ 0.19
FAM228B-209ENST00000615135 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
FAM228B-209ENST00000615135 DNAJC5Q9H3Z4 198 aa16.03■□□□□ 0.16
FAM228B-209ENST00000615135 NACADO15069 1562 aa16.03■□□□□ 0.16
FAM228B-209ENST00000615135 FOXD1Q16676 465 aa15.9■□□□□ 0.14
FAM228B-209ENST00000615135 UNC13AQ9UPW8 1703 aa15.87■□□□□ 0.13
FAM228B-209ENST00000615135 BICRAQ9NZM4 1560 aa15.84■□□□□ 0.13
FAM228B-209ENST00000615135 CECR2Q9BXF3 1484 aa15.71■□□□□ 0.11
FAM228B-209ENST00000615135 DCAF8L2P0C7V8 631 aa15.67■□□□□ 0.1
FAM228B-209ENST00000615135 MYO15BQ96JP2 1530 aa15.67■□□□□ 0.1
FAM228B-209ENST00000615135 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
FAM228B-209ENST00000615135 SHROOM4Q9ULL8 1493 aa15.61■□□□□ 0.09
FAM228B-209ENST00000615135 PPP6R1Q9UPN7 881 aa15.56■□□□□ 0.08
FAM228B-209ENST00000615135 ADRA2BP18089 450 aa15.55■□□□□ 0.08
FAM228B-209ENST00000615135 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
FAM228B-209ENST00000615135 CUX2O14529 1486 aa15.27■□□□□ 0.04
FAM228B-209ENST00000615135 DCAF1Q9Y4B6 1507 aa15.21■□□□□ 0.03
FAM228B-209ENST00000615135 SCRIBQ14160 1630 aa15.15■□□□□ 0.02
FAM228B-209ENST00000615135 ZCCHC6Q5VYS8 1495 aaKnown RBP15.09■□□□□ 0.01
FAM228B-209ENST00000615135 ERCC6Q03468 1493 aa14.99□□□□□ -0.01
FAM228B-209ENST00000615135 PIAS4Q8N2W9 510 aaPredicted RBP14.94□□□□□ -0.02
FAM228B-209ENST00000615135 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
FAM228B-209ENST00000615135 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
FAM228B-209ENST00000615135 MSH5O43196 834 aa14.79□□□□□ -0.04
FAM228B-209ENST00000615135 NESP48681 1621 aa14.72□□□□□ -0.05
FAM228B-209ENST00000615135 THOC2Q8NI27 1593 aaKnown RBP14.72□□□□□ -0.05
FAM228B-209ENST00000615135 KCNA4P22459 653 aa14.7□□□□□ -0.06
FAM228B-209ENST00000615135 ATAD2BQ9ULI0 1458 aa14.66□□□□□ -0.06
FAM228B-209ENST00000615135 HMGXB3Q12766 1538 aa14.63□□□□□ -0.07
FAM228B-209ENST00000615135 SMARCA2P51531 1590 aa14.57□□□□□ -0.08
FAM228B-209ENST00000615135 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
FAM228B-209ENST00000615135 PPP4R3CPQ6ZMV5 832 aa14.51□□□□□ -0.09
FAM228B-209ENST00000615135 PDS5BQ9NTI5 1447 aa14.49□□□□□ -0.09
FAM228B-209ENST00000615135 KIF21AQ7Z4S6 1674 aa14.49□□□□□ -0.09
FAM228B-209ENST00000615135 OSCARQ8IYS5 282 aa14.47□□□□□ -0.09
FAM228B-209ENST00000615135 SMARCA4P51532 1647 aa14.45□□□□□ -0.1
FAM228B-209ENST00000615135 BAZ1BQ9UIG0 1483 aaKnown RBP14.44□□□□□ -0.1
FAM228B-209ENST00000615135 BAZ1AQ9NRL2 1556 aaPredicted RBP14.43□□□□□ -0.1
FAM228B-209ENST00000615135 WDR62O43379 1518 aa14.4□□□□□ -0.1
FAM228B-209ENST00000615135 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
FAM228B-209ENST00000615135 PEG3Q9GZU2 1588 aa14.39□□□□□ -0.11
FAM228B-209ENST00000615135 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.12
FAM228B-209ENST00000615135 RIMBP3CA6NJZ7 1639 aa14.3□□□□□ -0.12
FAM228B-209ENST00000615135 RIMBP3BA6NNM3 1639 aa14.3□□□□□ -0.12
FAM228B-209ENST00000615135 RIMBP3Q9UFD9 1639 aa14.3□□□□□ -0.12
FAM228B-209ENST00000615135 ARHGEF11O15085 1522 aa14.2□□□□□ -0.14
FAM228B-209ENST00000615135 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
FAM228B-209ENST00000615135 EHMT2Q96KQ7 1210 aa14.14□□□□□ -0.15
FAM228B-209ENST00000615135 MROH2BQ7Z745 1585 aa14.13□□□□□ -0.15
FAM228B-209ENST00000615135 FANCD2Q9BXW9 1451 aa14.12□□□□□ -0.15
FAM228B-209ENST00000615135 CYB5RLQ6IPT4 315 aa14.12□□□□□ -0.15
FAM228B-209ENST00000615135 TRHP20396 242 aaPredicted RBP14.11□□□□□ -0.15
FAM228B-209ENST00000615135 POTEDQ86YR6 584 aa14.11□□□□□ -0.15
FAM228B-209ENST00000615135 NCBP3Q53F19 620 aaKnown RBP14.09□□□□□ -0.15
FAM228B-209ENST00000615135 NPM3O75607 178 aaKnown RBP14.06□□□□□ -0.16
FAM228B-209ENST00000615135 URB2Q14146 1524 aaKnown RBP14.05□□□□□ -0.16
FAM228B-209ENST00000615135 MAPK8IP2Q13387 824 aaPredicted RBP14.04□□□□□ -0.16
FAM228B-209ENST00000615135 CFTRP13569 1480 aa14.04□□□□□ -0.16
FAM228B-209ENST00000615135 ARAP1Q96P48 1450 aa14.02□□□□□ -0.16
FAM228B-209ENST00000615135 SLC4A1APQ9BWU0 796 aaKnown RBP13.98□□□□□ -0.17
FAM228B-209ENST00000615135 ZNF608Q9ULD9 1512 aaPredicted RBP13.98□□□□□ -0.17
FAM228B-209ENST00000615135 IFT140Q96RY7 1462 aa13.96□□□□□ -0.17
FAM228B-209ENST00000615135 RSF1Q96T23 1441 aaPredicted RBP13.95□□□□□ -0.18
FAM228B-209ENST00000615135 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
FAM228B-209ENST00000615135 SCAF1Q9H7N4 1312 aaKnown RBP13.93□□□□□ -0.18
FAM228B-209ENST00000615135 WIZO95785 1651 aa13.9□□□□□ -0.18
FAM228B-209ENST00000615135 CHD1O14646 1710 aa13.84□□□□□ -0.19
FAM228B-209ENST00000615135 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.19
FAM228B-209ENST00000615135 TOPBP1Q92547 1522 aa13.8□□□□□ -0.2
FAM228B-209ENST00000615135 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
FAM228B-209ENST00000615135 AQRO60306 1485 aaKnown RBP eCLIP13.77□□□□□ -0.21
FAM228B-209ENST00000615135 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
FAM228B-209ENST00000615135 ABCC8Q09428 1581 aa13.76□□□□□ -0.21
FAM228B-209ENST00000615135 FBLN2P98095 1184 aa13.74□□□□□ -0.21
FAM228B-209ENST00000615135 CLASP1Q7Z460 1538 aa13.74□□□□□ -0.21
FAM228B-209ENST00000615135 TARBP1Q13395 1621 aaKnown RBP13.73□□□□□ -0.21
FAM228B-209ENST00000615135 ILDR1Q86SU0 546 aaPredicted RBP13.73□□□□□ -0.21
FAM228B-209ENST00000615135 TOP2AP11388 1531 aaKnown RBP13.71□□□□□ -0.21
FAM228B-209ENST00000615135 DNMBPQ6XZF7 1577 aa13.67□□□□□ -0.22
FAM228B-209ENST00000615135 SYNJ1O43426 1573 aa13.63□□□□□ -0.23
FAM228B-209ENST00000615135 GAPVD1Q14C86 1478 aa13.61□□□□□ -0.23
FAM228B-209ENST00000615135 POLA1P09884 1462 aaPredicted RBP13.61□□□□□ -0.23
FAM228B-209ENST00000615135 ZBTB22O15209 634 aa13.59□□□□□ -0.23
FAM228B-209ENST00000615135 CHMP7Q8WUX9 453 aaPredicted RBP13.59□□□□□ -0.23
FAM228B-209ENST00000615135 SNAPC4Q5SXM2 1469 aa13.58□□□□□ -0.24
FAM228B-209ENST00000615135 TDRD9Q8NDG6 1382 aaKnown RBP13.58□□□□□ -0.24
FAM228B-209ENST00000615135 WDR97A6NE52 1622 aa13.57□□□□□ -0.24
FAM228B-209ENST00000615135 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
FAM228B-209ENST00000615135 MAGI1Q96QZ7 1491 aaPredicted RBP13.57□□□□□ -0.24
FAM228B-209ENST00000615135 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
FAM228B-209ENST00000615135 RNF216Q9NWF9 866 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms