RNA–Protein interactions for RNA: ENST00000608624.5

LINC00343-212, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 774 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-212ENST00000608624 AEBP2Q6ZN18 517 aaPredicted RBP26.12■■□□□ 1.77
LINC00343-212ENST00000608624 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
LINC00343-212ENST00000608624 SENP3Q9H4L4 574 aaPredicted RBP22.26■■□□□ 1.15
LINC00343-212ENST00000608624 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
LINC00343-212ENST00000608624 NISCHQ9Y2I1 1504 aa21.81■■□□□ 1.08
LINC00343-212ENST00000608624 FOXD1Q16676 465 aa20.94■□□□□ 0.94
LINC00343-212ENST00000608624 POTEDQ86YR6 584 aa20.7■□□□□ 0.9
LINC00343-212ENST00000608624 MSH5O43196 834 aa19.77■□□□□ 0.76
LINC00343-212ENST00000608624 PIAS4Q8N2W9 510 aaPredicted RBP19.3■□□□□ 0.68
LINC00343-212ENST00000608624 CCDC180Q9P1Z9 1646 aa19.27■□□□□ 0.68
LINC00343-212ENST00000608624 PPP6R1Q9UPN7 881 aa19.05■□□□□ 0.64
LINC00343-212ENST00000608624 ADRA2BP18089 450 aa18.89■□□□□ 0.61
LINC00343-212ENST00000608624 ABCC9O60706 1549 aa18.78■□□□□ 0.6
LINC00343-212ENST00000608624 PLPPR3Q6T4P5 718 aa18.75■□□□□ 0.59
LINC00343-212ENST00000608624 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
LINC00343-212ENST00000608624 DCAF8L2P0C7V8 631 aa18.1■□□□□ 0.49
LINC00343-212ENST00000608624 NACADO15069 1562 aa18.04■□□□□ 0.48
LINC00343-212ENST00000608624 RB1CC1Q8TDY2 1594 aa18.04■□□□□ 0.48
LINC00343-212ENST00000608624 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
LINC00343-212ENST00000608624 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
LINC00343-212ENST00000608624 UNC13AQ9UPW8 1703 aa17.76■□□□□ 0.43
LINC00343-212ENST00000608624 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
LINC00343-212ENST00000608624 MAPK8IP2Q13387 824 aaPredicted RBP17.61■□□□□ 0.41
LINC00343-212ENST00000608624 BICRAQ9NZM4 1560 aa17.61■□□□□ 0.41
LINC00343-212ENST00000608624 PABPN1Q86U42 306 aaKnown RBP eCLIP17.58■□□□□ 0.4
LINC00343-212ENST00000608624 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.4
LINC00343-212ENST00000608624 CACNB1Q02641 598 aaPredicted RBP17.45■□□□□ 0.38
LINC00343-212ENST00000608624 SHROOM4Q9ULL8 1493 aa17.44■□□□□ 0.38
LINC00343-212ENST00000608624 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
LINC00343-212ENST00000608624 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
LINC00343-212ENST00000608624 EIF4G1Q04637 1599 aaKnown RBP17.07■□□□□ 0.32
LINC00343-212ENST00000608624 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
LINC00343-212ENST00000608624 CC2D2AQ9P2K1 1620 aa16.97■□□□□ 0.31
LINC00343-212ENST00000608624 SMARCA4P51532 1647 aa16.92■□□□□ 0.3
LINC00343-212ENST00000608624 RNF39Q9H2S5 420 aa16.88■□□□□ 0.29
LINC00343-212ENST00000608624 MROH2BQ7Z745 1585 aa16.88■□□□□ 0.29
LINC00343-212ENST00000608624 BAZ1AQ9NRL2 1556 aaPredicted RBP16.85■□□□□ 0.29
LINC00343-212ENST00000608624 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
LINC00343-212ENST00000608624 ATAD2BQ9ULI0 1458 aa16.75■□□□□ 0.27
LINC00343-212ENST00000608624 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
LINC00343-212ENST00000608624 WIZO95785 1651 aa16.71■□□□□ 0.27
LINC00343-212ENST00000608624 PEG3Q9GZU2 1588 aa16.7■□□□□ 0.26
LINC00343-212ENST00000608624 SMARCA2P51531 1590 aa16.68■□□□□ 0.26
LINC00343-212ENST00000608624 NCAPD3P42695 1498 aa16.66■□□□□ 0.26
LINC00343-212ENST00000608624 HOXD11P31277 338 aaPredicted RBP16.64■□□□□ 0.25
LINC00343-212ENST00000608624 HMGXB3Q12766 1538 aa16.62■□□□□ 0.25
LINC00343-212ENST00000608624 BAZ1BQ9UIG0 1483 aaKnown RBP16.61■□□□□ 0.25
LINC00343-212ENST00000608624 C1QBPQ07021 282 aaKnown RBP16.53■□□□□ 0.24
LINC00343-212ENST00000608624 TOP2AP11388 1531 aaKnown RBP16.49■□□□□ 0.23
LINC00343-212ENST00000608624 SUPT5HO00267 1087 aaKnown RBP16.41■□□□□ 0.22
LINC00343-212ENST00000608624 PPP4R3CPQ6ZMV5 832 aa16.38■□□□□ 0.21
LINC00343-212ENST00000608624 NESP48681 1621 aa16.34■□□□□ 0.21
LINC00343-212ENST00000608624 CCDC88BA6NC98 1476 aa16.3■□□□□ 0.2
LINC00343-212ENST00000608624 RNF216Q9NWF9 866 aaPredicted RBP16.27■□□□□ 0.2
LINC00343-212ENST00000608624 CNKSR2Q8WXI2 1034 aa16.22■□□□□ 0.19
LINC00343-212ENST00000608624 LAMC3Q9Y6N6 1575 aa16.18■□□□□ 0.18
LINC00343-212ENST00000608624 CADPSQ9ULU8 1353 aa16.18■□□□□ 0.18
LINC00343-212ENST00000608624 CFTRP13569 1480 aa16.16■□□□□ 0.18
LINC00343-212ENST00000608624 KIF21AQ7Z4S6 1674 aa16.14■□□□□ 0.17
LINC00343-212ENST00000608624 ERCC6Q03468 1493 aa16.1■□□□□ 0.17
LINC00343-212ENST00000608624 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
LINC00343-212ENST00000608624 FANCD2Q9BXW9 1451 aa16.05■□□□□ 0.16
LINC00343-212ENST00000608624 POTEHQ6S545 545 aa16.04■□□□□ 0.16
LINC00343-212ENST00000608624 PDS5BQ9NTI5 1447 aa16.03■□□□□ 0.16
LINC00343-212ENST00000608624 THOC2Q8NI27 1593 aaKnown RBP16.03■□□□□ 0.16
LINC00343-212ENST00000608624 CEP164Q9UPV0 1460 aa15.98■□□□□ 0.15
LINC00343-212ENST00000608624 MRC2Q9UBG0 1479 aa15.94■□□□□ 0.14
LINC00343-212ENST00000608624 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
LINC00343-212ENST00000608624 WDR62O43379 1518 aa15.9■□□□□ 0.14
LINC00343-212ENST00000608624 ABCC8Q09428 1581 aa15.83■□□□□ 0.13
LINC00343-212ENST00000608624 CUX1P39880 1505 aa15.83■□□□□ 0.12
LINC00343-212ENST00000608624 TOPBP1Q92547 1522 aa15.83■□□□□ 0.12
LINC00343-212ENST00000608624 CUX2O14529 1486 aa15.82■□□□□ 0.12
LINC00343-212ENST00000608624 DNMBPQ6XZF7 1577 aa15.81■□□□□ 0.12
LINC00343-212ENST00000608624 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
LINC00343-212ENST00000608624 SYNJ1O43426 1573 aa15.76■□□□□ 0.11
LINC00343-212ENST00000608624 POLA1P09884 1462 aaPredicted RBP15.71■□□□□ 0.11
LINC00343-212ENST00000608624 WRNQ14191 1432 aaPredicted RBP eCLIP15.71■□□□□ 0.11
LINC00343-212ENST00000608624 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.1
LINC00343-212ENST00000608624 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
LINC00343-212ENST00000608624 BIVM-ERCC5R4GMW8 1640 aa15.68■□□□□ 0.1
LINC00343-212ENST00000608624 RAD54L2Q9Y4B4 1467 aa15.68■□□□□ 0.1
LINC00343-212ENST00000608624 TARBP1Q13395 1621 aaKnown RBP15.67■□□□□ 0.1
LINC00343-212ENST00000608624 ZNF608Q9ULD9 1512 aaPredicted RBP15.66■□□□□ 0.1
LINC00343-212ENST00000608624 IFT140Q96RY7 1462 aa15.63■□□□□ 0.09
LINC00343-212ENST00000608624 WDR97A6NE52 1622 aa15.61■□□□□ 0.09
LINC00343-212ENST00000608624 SOGA1O94964 1423 aa15.59■□□□□ 0.09
LINC00343-212ENST00000608624 EIF4G3O43432 1585 aaKnown RBP15.58■□□□□ 0.08
LINC00343-212ENST00000608624 AQRO60306 1485 aaKnown RBP eCLIP15.55■□□□□ 0.08
LINC00343-212ENST00000608624 DSG3P32926 999 aa15.55■□□□□ 0.08
LINC00343-212ENST00000608624 TDRD9Q8NDG6 1382 aaKnown RBP15.54■□□□□ 0.08
LINC00343-212ENST00000608624 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
LINC00343-212ENST00000608624 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
LINC00343-212ENST00000608624 SPINK5Q9NQ38 1064 aaPredicted RBP15.47■□□□□ 0.07
LINC00343-212ENST00000608624 U3KPZ7 1027 aaPredicted RBP15.45■□□□□ 0.06
LINC00343-212ENST00000608624 PBRM1Q86U86 1689 aa15.44■□□□□ 0.06
LINC00343-212ENST00000608624 GAPVD1Q14C86 1478 aa15.43■□□□□ 0.06
LINC00343-212ENST00000608624 NCBP3Q53F19 620 aaKnown RBP15.42■□□□□ 0.06
LINC00343-212ENST00000608624 SNAPC4Q5SXM2 1469 aa15.41■□□□□ 0.06
LINC00343-212ENST00000608624 RUSC2Q8N2Y8 1516 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms