RNA–Protein interactions for RNA: ENST00000598772.1

HERC3-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 2

Gene HERC3, Length 326 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-213ENST00000598772 AEBP2Q6ZN18 517 aaPredicted RBP13.44□□□□□ -0.26
HERC3-213ENST00000598772 CHIC1Q5VXU3 224 aa12.31□□□□□ -0.44
HERC3-213ENST00000598772 POTEDQ86YR6 584 aa12.09□□□□□ -0.47
HERC3-213ENST00000598772 NISCHQ9Y2I1 1504 aa11.42□□□□□ -0.58
HERC3-213ENST00000598772 SENP3Q9H4L4 574 aaPredicted RBP11.42□□□□□ -0.58
HERC3-213ENST00000598772 ABCC9O60706 1549 aa11.38□□□□□ -0.59
HERC3-213ENST00000598772 DNAJC5BQ9UF47 199 aa11.33□□□□□ -0.6
HERC3-213ENST00000598772 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.61
HERC3-213ENST00000598772 FOXD1Q16676 465 aa10.9□□□□□ -0.66
HERC3-213ENST00000598772 DNAJC5Q9H3Z4 198 aa10.89□□□□□ -0.67
HERC3-213ENST00000598772 PABPN1Q86U42 306 aaKnown RBP eCLIP10.6□□□□□ -0.71
HERC3-213ENST00000598772 MSH5O43196 834 aa10.44□□□□□ -0.74
HERC3-213ENST00000598772 CCDC180Q9P1Z9 1646 aa10.42□□□□□ -0.74
HERC3-213ENST00000598772 DCAF8L2P0C7V8 631 aa10.37□□□□□ -0.75
HERC3-213ENST00000598772 RB1CC1Q8TDY2 1594 aa10.37□□□□□ -0.75
HERC3-213ENST00000598772 TRIM41Q8WV44 630 aa10.31□□□□□ -0.76
HERC3-213ENST00000598772 CECR2Q9BXF3 1484 aa10.28□□□□□ -0.76
HERC3-213ENST00000598772 CC2D2AQ9P2K1 1620 aa10.13□□□□□ -0.79
HERC3-213ENST00000598772 NACADO15069 1562 aa10.09□□□□□ -0.79
HERC3-213ENST00000598772 UNC13AQ9UPW8 1703 aa10.07□□□□□ -0.8
HERC3-213ENST00000598772 BICRAQ9NZM4 1560 aa10.05□□□□□ -0.8
HERC3-213ENST00000598772 CUX2O14529 1486 aa9.94□□□□□ -0.82
HERC3-213ENST00000598772 EIF4G1Q04637 1599 aaKnown RBP9.9□□□□□ -0.82
HERC3-213ENST00000598772 ERCC6Q03468 1493 aa9.89□□□□□ -0.83
HERC3-213ENST00000598772 PIAS4Q8N2W9 510 aaPredicted RBP9.88□□□□□ -0.83
HERC3-213ENST00000598772 SHROOM4Q9ULL8 1493 aa9.73□□□□□ -0.85
HERC3-213ENST00000598772 SCRIBQ14160 1630 aa9.67□□□□□ -0.86
HERC3-213ENST00000598772 TRHP20396 242 aaPredicted RBP9.67□□□□□ -0.86
HERC3-213ENST00000598772 CACNB1Q02641 598 aaPredicted RBP9.64□□□□□ -0.87
HERC3-213ENST00000598772 MYO15BQ96JP2 1530 aa9.61□□□□□ -0.87
HERC3-213ENST00000598772 OSCARQ8IYS5 282 aa9.57□□□□□ -0.88
HERC3-213ENST00000598772 NESP48681 1621 aa9.54□□□□□ -0.88
HERC3-213ENST00000598772 ILDR1Q86SU0 546 aaPredicted RBP9.54□□□□□ -0.88
HERC3-213ENST00000598772 CYB5RLQ6IPT4 315 aa9.48□□□□□ -0.89
HERC3-213ENST00000598772 PPP6R1Q9UPN7 881 aa9.48□□□□□ -0.89
HERC3-213ENST00000598772 SMARCA2P51531 1590 aa9.46□□□□□ -0.9
HERC3-213ENST00000598772 THOC2Q8NI27 1593 aaKnown RBP9.42□□□□□ -0.9
HERC3-213ENST00000598772 BAZ1AQ9NRL2 1556 aaPredicted RBP9.39□□□□□ -0.91
HERC3-213ENST00000598772 RIMBP3CA6NJZ7 1639 aa9.38□□□□□ -0.91
HERC3-213ENST00000598772 RIMBP3BA6NNM3 1639 aa9.38□□□□□ -0.91
HERC3-213ENST00000598772 RIMBP3Q9UFD9 1639 aa9.38□□□□□ -0.91
HERC3-213ENST00000598772 NCAPD3P42695 1498 aa9.35□□□□□ -0.91
HERC3-213ENST00000598772 ADRA2BP18089 450 aa9.35□□□□□ -0.91
HERC3-213ENST00000598772 PDS5BQ9NTI5 1447 aa9.31□□□□□ -0.92
HERC3-213ENST00000598772 KIF21AQ7Z4S6 1674 aa9.3□□□□□ -0.92
HERC3-213ENST00000598772 ARHGEF11O15085 1522 aa9.27□□□□□ -0.93
HERC3-213ENST00000598772 ATAD2BQ9ULI0 1458 aa9.27□□□□□ -0.93
HERC3-213ENST00000598772 DCAF1Q9Y4B6 1507 aa9.26□□□□□ -0.93
HERC3-213ENST00000598772 ZCCHC6Q5VYS8 1495 aaKnown RBP9.25□□□□□ -0.93
HERC3-213ENST00000598772 MRC2Q9UBG0 1479 aa9.23□□□□□ -0.93
HERC3-213ENST00000598772 POTEHQ6S545 545 aa9.23□□□□□ -0.93
HERC3-213ENST00000598772 LAMC3Q9Y6N6 1575 aa9.23□□□□□ -0.93
HERC3-213ENST00000598772 BAZ1BQ9UIG0 1483 aaKnown RBP9.17□□□□□ -0.94
HERC3-213ENST00000598772 FBLN2P98095 1184 aa9.16□□□□□ -0.94
HERC3-213ENST00000598772 HMGXB3Q12766 1538 aa9.15□□□□□ -0.94
HERC3-213ENST00000598772 WDR62O43379 1518 aa9.15□□□□□ -0.95
HERC3-213ENST00000598772 ARAP1Q96P48 1450 aa9.14□□□□□ -0.95
HERC3-213ENST00000598772 CADPSQ9ULU8 1353 aa9.12□□□□□ -0.95
HERC3-213ENST00000598772 CEP164Q9UPV0 1460 aa9.08□□□□□ -0.96
HERC3-213ENST00000598772 SMARCA4P51532 1647 aa9.03□□□□□ -0.96
HERC3-213ENST00000598772 KDM4FA0A1W2PPD8 638 aa9.03□□□□□ -0.96
HERC3-213ENST00000598772 FANCD2Q9BXW9 1451 aa9.01□□□□□ -0.97
HERC3-213ENST00000598772 ZNF608Q9ULD9 1512 aaPredicted RBP9□□□□□ -0.97
HERC3-213ENST00000598772 FBXO41Q8TF61 875 aa8.98□□□□□ -0.97
HERC3-213ENST00000598772 LMTK3Q96Q04 1460 aa8.97□□□□□ -0.97
HERC3-213ENST00000598772 URB2Q14146 1524 aaKnown RBP8.95□□□□□ -0.98
HERC3-213ENST00000598772 DMRT2Q9Y5R5 561 aa8.95□□□□□ -0.98
HERC3-213ENST00000598772 RSF1Q96T23 1441 aaPredicted RBP8.95□□□□□ -0.98
HERC3-213ENST00000598772 MAPK8IP2Q13387 824 aaPredicted RBP8.94□□□□□ -0.98
HERC3-213ENST00000598772 SOCS7O14512 581 aa8.93□□□□□ -0.98
HERC3-213ENST00000598772 CHD1O14646 1710 aa8.91□□□□□ -0.98
HERC3-213ENST00000598772 PLPPR3Q6T4P5 718 aa8.9□□□□□ -0.98
HERC3-213ENST00000598772 ILDR2Q71H61 639 aa8.9□□□□□ -0.98
HERC3-213ENST00000598772 RNF39Q9H2S5 420 aa8.9□□□□□ -0.98
HERC3-213ENST00000598772 IFT140Q96RY7 1462 aa8.89□□□□□ -0.99
HERC3-213ENST00000598772 AQRO60306 1485 aaKnown RBP eCLIP8.89□□□□□ -0.99
HERC3-213ENST00000598772 CHMP7Q8WUX9 453 aaPredicted RBP8.88□□□□□ -0.99
HERC3-213ENST00000598772 DISP3Q9P2K9 1392 aa8.85□□□□□ -0.99
HERC3-213ENST00000598772 FAM69CQ0P6D2 419 aa8.84□□□□□ -0.99
HERC3-213ENST00000598772 PEG3Q9GZU2 1588 aa8.84□□□□□ -0.99
HERC3-213ENST00000598772 MROH2BQ7Z745 1585 aa8.83□□□□□ -1
HERC3-213ENST00000598772 GAPVD1Q14C86 1478 aa8.83□□□□□ -1
HERC3-213ENST00000598772 EIF4G3O43432 1585 aaKnown RBP8.82□□□□□ -1
HERC3-213ENST00000598772 ERCC6L2Q5T890 1561 aa8.82□□□□□ -1
HERC3-213ENST00000598772 HECW2Q9P2P5 1572 aa8.8□□□□□ -1
HERC3-213ENST00000598772 CFTRP13569 1480 aa8.79□□□□□ -1
HERC3-213ENST00000598772 SYNJ2O15056 1496 aa8.77□□□□□ -1
HERC3-213ENST00000598772 TDRD9Q8NDG6 1382 aaKnown RBP8.75□□□□□ -1.01
HERC3-213ENST00000598772 SYNJ1O43426 1573 aa8.74□□□□□ -1.01
HERC3-213ENST00000598772 NPM1P06748 294 aaKnown RBP eCLIP8.74□□□□□ -1.01
HERC3-213ENST00000598772 CLASP1Q7Z460 1538 aa8.74□□□□□ -1.01
HERC3-213ENST00000598772 TOPBP1Q92547 1522 aa8.73□□□□□ -1.01
HERC3-213ENST00000598772 ADGRL1O94910 1474 aa8.72□□□□□ -1.01
HERC3-213ENST00000598772 SNAPC4Q5SXM2 1469 aa8.71□□□□□ -1.01
HERC3-213ENST00000598772 KIF13AQ9H1H9 1805 aa8.71□□□□□ -1.01
HERC3-213ENST00000598772 KDM6BO15054 1643 aa8.71□□□□□ -1.02
HERC3-213ENST00000598772 WIZO95785 1651 aa8.69□□□□□ -1.02
HERC3-213ENST00000598772 RAD54L2Q9Y4B4 1467 aa8.67□□□□□ -1.02
HERC3-213ENST00000598772 TSPOAP1O95153 1857 aa8.66□□□□□ -1.02
HERC3-213ENST00000598772 SOGA1O94964 1423 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms