RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 NISCHQ9Y2I1 1504 aa23.21■■□□□ 1.31
VPS4B-206ENST00000591475 CCDC180Q9P1Z9 1646 aa20.33■□□□□ 0.84
VPS4B-206ENST00000591475 ZCCHC6Q5VYS8 1495 aaKnown RBP19.45■□□□□ 0.7
VPS4B-206ENST00000591475 ABCC9O60706 1549 aa19.4■□□□□ 0.7
VPS4B-206ENST00000591475 DCAF8L2P0C7V8 631 aa19.24■□□□□ 0.67
VPS4B-206ENST00000591475 DCAF1Q9Y4B6 1507 aa19.22■□□□□ 0.67
VPS4B-206ENST00000591475 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
VPS4B-206ENST00000591475 NACADO15069 1562 aa19.01■□□□□ 0.63
VPS4B-206ENST00000591475 RB1CC1Q8TDY2 1594 aa18.89■□□□□ 0.62
VPS4B-206ENST00000591475 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
VPS4B-206ENST00000591475 SCRIBQ14160 1630 aa18.62■□□□□ 0.57
VPS4B-206ENST00000591475 SUPT5HO00267 1087 aaKnown RBP18.45■□□□□ 0.54
VPS4B-206ENST00000591475 UNC13AQ9UPW8 1703 aa18.41■□□□□ 0.54
VPS4B-206ENST00000591475 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
VPS4B-206ENST00000591475 PABPN1Q86U42 306 aaKnown RBP eCLIP18.25■□□□□ 0.51
VPS4B-206ENST00000591475 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
VPS4B-206ENST00000591475 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
VPS4B-206ENST00000591475 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
VPS4B-206ENST00000591475 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
VPS4B-206ENST00000591475 HRCP23327 699 aa17.92■□□□□ 0.46
VPS4B-206ENST00000591475 MROH2BQ7Z745 1585 aa17.9■□□□□ 0.46
VPS4B-206ENST00000591475 SMARCA4P51532 1647 aa17.86■□□□□ 0.45
VPS4B-206ENST00000591475 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
VPS4B-206ENST00000591475 WIZO95785 1651 aa17.72■□□□□ 0.43
VPS4B-206ENST00000591475 PCGF6Q9BYE7 350 aa17.72■□□□□ 0.43
VPS4B-206ENST00000591475 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
VPS4B-206ENST00000591475 SMARCA2P51531 1590 aa17.65■□□□□ 0.42
VPS4B-206ENST00000591475 ATAD2BQ9ULI0 1458 aa17.65■□□□□ 0.42
VPS4B-206ENST00000591475 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
VPS4B-206ENST00000591475 NCAPD3P42695 1498 aa17.56■□□□□ 0.4
VPS4B-206ENST00000591475 CC2D2AQ9P2K1 1620 aa17.55■□□□□ 0.4
VPS4B-206ENST00000591475 BAZ1BQ9UIG0 1483 aaKnown RBP17.54■□□□□ 0.4
VPS4B-206ENST00000591475 LOC105371045A0A1W2PR82 267 aa17.51■□□□□ 0.39
VPS4B-206ENST00000591475 HMGXB3Q12766 1538 aa17.5■□□□□ 0.39
VPS4B-206ENST00000591475 PPARGC1BQ86YN6 1023 aaKnown RBP17.43■□□□□ 0.38
VPS4B-206ENST00000591475 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
VPS4B-206ENST00000591475 CCDC88BA6NC98 1476 aa17.38■□□□□ 0.37
VPS4B-206ENST00000591475 DNAJC5BQ9UF47 199 aa17.29■□□□□ 0.36
VPS4B-206ENST00000591475 TRIM41Q8WV44 630 aa17.21■□□□□ 0.35
VPS4B-206ENST00000591475 ZEB1P37275 1124 aaPredicted RBP17.16■□□□□ 0.34
VPS4B-206ENST00000591475 CFTRP13569 1480 aa17.11■□□□□ 0.33
VPS4B-206ENST00000591475 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
VPS4B-206ENST00000591475 FAM9AQ8IZU1 332 aaPredicted RBP17.03■□□□□ 0.32
VPS4B-206ENST00000591475 LAMC3Q9Y6N6 1575 aa16.99■□□□□ 0.31
VPS4B-206ENST00000591475 NESP48681 1621 aa16.95■□□□□ 0.3
VPS4B-206ENST00000591475 PRDM2Q13029 1718 aa16.94■□□□□ 0.3
VPS4B-206ENST00000591475 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
VPS4B-206ENST00000591475 WRNQ14191 1432 aaPredicted RBP eCLIP16.9■□□□□ 0.3
VPS4B-206ENST00000591475 PDS5BQ9NTI5 1447 aa16.89■□□□□ 0.29
VPS4B-206ENST00000591475 FANCD2Q9BXW9 1451 aa16.89■□□□□ 0.29
VPS4B-206ENST00000591475 EHMT2Q96KQ7 1210 aa16.84■□□□□ 0.29
VPS4B-206ENST00000591475 CEP164Q9UPV0 1460 aa16.81■□□□□ 0.28
VPS4B-206ENST00000591475 SYNJ1O43426 1573 aa16.78■□□□□ 0.28
VPS4B-206ENST00000591475 TOP2BQ02880 1626 aa16.76■□□□□ 0.27
VPS4B-206ENST00000591475 CUX1P39880 1505 aa16.75■□□□□ 0.27
VPS4B-206ENST00000591475 BIVM-ERCC5R4GMW8 1640 aa16.73■□□□□ 0.27
VPS4B-206ENST00000591475 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
VPS4B-206ENST00000591475 ERCC6Q03468 1493 aa16.69■□□□□ 0.26
VPS4B-206ENST00000591475 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
VPS4B-206ENST00000591475 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
VPS4B-206ENST00000591475 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
VPS4B-206ENST00000591475 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
VPS4B-206ENST00000591475 MRC2Q9UBG0 1479 aa16.64■□□□□ 0.25
VPS4B-206ENST00000591475 SCAF1Q9H7N4 1312 aaKnown RBP16.61■□□□□ 0.25
VPS4B-206ENST00000591475 FGD5Q6ZNL6 1462 aa16.61■□□□□ 0.25
VPS4B-206ENST00000591475 CCER1Q8TC90 406 aaPredicted RBP16.61■□□□□ 0.25
VPS4B-206ENST00000591475 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.59■□□□□ 0.25
VPS4B-206ENST00000591475 SOGA1O94964 1423 aa16.59■□□□□ 0.25
VPS4B-206ENST00000591475 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
VPS4B-206ENST00000591475 EEA1Q15075 1411 aa16.57■□□□□ 0.24
VPS4B-206ENST00000591475 WDR62O43379 1518 aa16.56■□□□□ 0.24
VPS4B-206ENST00000591475 CEP162Q5TB80 1403 aa16.55■□□□□ 0.24
VPS4B-206ENST00000591475 THOC2Q8NI27 1593 aaKnown RBP16.53■□□□□ 0.24
VPS4B-206ENST00000591475 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
VPS4B-206ENST00000591475 RUSC2Q8N2Y8 1516 aa16.51■□□□□ 0.23
VPS4B-206ENST00000591475 KIF27Q86VH2 1401 aa16.5■□□□□ 0.23
VPS4B-206ENST00000591475 RAD54L2Q9Y4B4 1467 aa16.49■□□□□ 0.23
VPS4B-206ENST00000591475 CSRNP3Q8WYN3 585 aa16.49■□□□□ 0.23
VPS4B-206ENST00000591475 ABCA10Q8WWZ4 1543 aa16.48■□□□□ 0.23
VPS4B-206ENST00000591475 CUX2O14529 1486 aa16.47■□□□□ 0.23
VPS4B-206ENST00000591475 IFT140Q96RY7 1462 aa16.43■□□□□ 0.22
VPS4B-206ENST00000591475 ACIN1Q9UKV3 1341 aaKnown RBP16.43■□□□□ 0.22
VPS4B-206ENST00000591475 TARBP1Q13395 1621 aaKnown RBP16.42■□□□□ 0.22
VPS4B-206ENST00000591475 GOLGA3Q08378 1498 aa16.4■□□□□ 0.22
VPS4B-206ENST00000591475 DIEXFQ68CQ4 756 aaKnown RBP16.4■□□□□ 0.22
VPS4B-206ENST00000591475 WDR97A6NE52 1622 aa16.39■□□□□ 0.21
VPS4B-206ENST00000591475 TDRD9Q8NDG6 1382 aaKnown RBP16.38■□□□□ 0.21
VPS4B-206ENST00000591475 TTBK1Q5TCY1 1321 aaPredicted RBP16.38■□□□□ 0.21
VPS4B-206ENST00000591475 IGF1RP08069 1367 aa16.37■□□□□ 0.21
VPS4B-206ENST00000591475 UBTFP17480 764 aaKnown RBP16.36■□□□□ 0.21
VPS4B-206ENST00000591475 GAPVD1Q14C86 1478 aa16.34■□□□□ 0.21
VPS4B-206ENST00000591475 CENPBP07199 599 aaPredicted RBP16.34■□□□□ 0.21
VPS4B-206ENST00000591475 NEUROD1Q13562 356 aa16.34■□□□□ 0.21
VPS4B-206ENST00000591475 ABCA5Q8WWZ7 1642 aa16.33■□□□□ 0.21
VPS4B-206ENST00000591475 AEBP2Q6ZN18 517 aaPredicted RBP16.32■□□□□ 0.2
VPS4B-206ENST00000591475 PRXQ9BXM0 1461 aa16.32■□□□□ 0.2
VPS4B-206ENST00000591475 KIF21BO75037 1637 aa16.31■□□□□ 0.2
VPS4B-206ENST00000591475 AQRO60306 1485 aaKnown RBP eCLIP16.31■□□□□ 0.2
VPS4B-206ENST00000591475 ERICH3Q5RHP9 1530 aa16.3■□□□□ 0.2
VPS4B-206ENST00000591475 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms