RNA–Protein interactions for RNA: ENST00000588534.1

ZNF554-202, Transcript of zinc finger protein 554, humanhuman

TSL 2

Gene ZNF554, Length 4,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF554-202ENST00000588534 NISCHQ9Y2I1 1504 aa15.49■□□□□ 0.07
ZNF554-202ENST00000588534 DCAF8L2P0C7V8 631 aa13.8□□□□□ -0.2
ZNF554-202ENST00000588534 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
ZNF554-202ENST00000588534 ABCC9O60706 1549 aa13.07□□□□□ -0.32
ZNF554-202ENST00000588534 SHROOM4Q9ULL8 1493 aa13.06□□□□□ -0.32
ZNF554-202ENST00000588534 ZCCHC6Q5VYS8 1495 aaKnown RBP12.91□□□□□ -0.34
ZNF554-202ENST00000588534 SUPT5HO00267 1087 aaKnown RBP12.84□□□□□ -0.35
ZNF554-202ENST00000588534 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
ZNF554-202ENST00000588534 NACADO15069 1562 aa12.73□□□□□ -0.37
ZNF554-202ENST00000588534 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
ZNF554-202ENST00000588534 MYO15BQ96JP2 1530 aa12.63□□□□□ -0.39
ZNF554-202ENST00000588534 PABPN1Q86U42 306 aaKnown RBP eCLIP12.5□□□□□ -0.41
ZNF554-202ENST00000588534 SCRIBQ14160 1630 aa12.45□□□□□ -0.42
ZNF554-202ENST00000588534 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
ZNF554-202ENST00000588534 BAZ1AQ9NRL2 1556 aaPredicted RBP12.12□□□□□ -0.47
ZNF554-202ENST00000588534 RSF1Q96T23 1441 aaPredicted RBP12.06□□□□□ -0.48
ZNF554-202ENST00000588534 FAM9AQ8IZU1 332 aaPredicted RBP12□□□□□ -0.49
ZNF554-202ENST00000588534 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.5
ZNF554-202ENST00000588534 CECR2Q9BXF3 1484 aa11.95□□□□□ -0.5
ZNF554-202ENST00000588534 SMARCA2P51531 1590 aa11.94□□□□□ -0.5
ZNF554-202ENST00000588534 CHIC1Q5VXU3 224 aa11.93□□□□□ -0.5
ZNF554-202ENST00000588534 UNC13AQ9UPW8 1703 aa11.87□□□□□ -0.51
ZNF554-202ENST00000588534 MROH2BQ7Z745 1585 aa11.87□□□□□ -0.51
ZNF554-202ENST00000588534 APLP2Q06481 763 aa11.83□□□□□ -0.51
ZNF554-202ENST00000588534 SMARCA4P51532 1647 aa11.82□□□□□ -0.52
ZNF554-202ENST00000588534 ATAD2BQ9ULI0 1458 aa11.8□□□□□ -0.52
ZNF554-202ENST00000588534 UBTFP17480 764 aaKnown RBP11.79□□□□□ -0.52
ZNF554-202ENST00000588534 EHMT2Q96KQ7 1210 aa11.77□□□□□ -0.53
ZNF554-202ENST00000588534 TOP2AP11388 1531 aaKnown RBP11.76□□□□□ -0.53
ZNF554-202ENST00000588534 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
ZNF554-202ENST00000588534 NCAPD3P42695 1498 aa11.73□□□□□ -0.53
ZNF554-202ENST00000588534 EIF4G1Q04637 1599 aaKnown RBP11.72□□□□□ -0.53
ZNF554-202ENST00000588534 CCDC88BA6NC98 1476 aa11.67□□□□□ -0.54
ZNF554-202ENST00000588534 WIZO95785 1651 aa11.67□□□□□ -0.54
ZNF554-202ENST00000588534 PDS5BQ9NTI5 1447 aa11.64□□□□□ -0.55
ZNF554-202ENST00000588534 SLC24A1O60721 1099 aa11.64□□□□□ -0.55
ZNF554-202ENST00000588534 CADPSQ9ULU8 1353 aa11.63□□□□□ -0.55
ZNF554-202ENST00000588534 CSRNP3Q8WYN3 585 aa11.62□□□□□ -0.55
ZNF554-202ENST00000588534 WRNQ14191 1432 aaPredicted RBP eCLIP11.62□□□□□ -0.55
ZNF554-202ENST00000588534 HMGXB3Q12766 1538 aa11.61□□□□□ -0.55
ZNF554-202ENST00000588534 EEA1Q15075 1411 aa11.6□□□□□ -0.55
ZNF554-202ENST00000588534 ERCC6Q03468 1493 aa11.56□□□□□ -0.56
ZNF554-202ENST00000588534 RANGAP1P46060 587 aaPredicted RBP11.56□□□□□ -0.56
ZNF554-202ENST00000588534 CC2D2AQ9P2K1 1620 aa11.53□□□□□ -0.56
ZNF554-202ENST00000588534 PEG3Q9GZU2 1588 aa11.53□□□□□ -0.56
ZNF554-202ENST00000588534 ATP1B4Q9UN42 357 aaPredicted RBP11.5□□□□□ -0.57
ZNF554-202ENST00000588534 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
ZNF554-202ENST00000588534 KIF27Q86VH2 1401 aa11.48□□□□□ -0.57
ZNF554-202ENST00000588534 LOC105371045A0A1W2PR82 267 aa11.48□□□□□ -0.57
ZNF554-202ENST00000588534 CEP164Q9UPV0 1460 aa11.45□□□□□ -0.58
ZNF554-202ENST00000588534 FBLN2P98095 1184 aa11.44□□□□□ -0.58
ZNF554-202ENST00000588534 CFTRP13569 1480 aa11.43□□□□□ -0.58
ZNF554-202ENST00000588534 FANCD2Q9BXW9 1451 aa11.42□□□□□ -0.58
ZNF554-202ENST00000588534 CHMP7Q8WUX9 453 aaPredicted RBP11.38□□□□□ -0.59
ZNF554-202ENST00000588534 SOGA1O94964 1423 aa11.36□□□□□ -0.59
ZNF554-202ENST00000588534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
ZNF554-202ENST00000588534 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
ZNF554-202ENST00000588534 GOLGA3Q08378 1498 aa11.34□□□□□ -0.59
ZNF554-202ENST00000588534 CUX2O14529 1486 aa11.34□□□□□ -0.59
ZNF554-202ENST00000588534 LAMC3Q9Y6N6 1575 aa11.32□□□□□ -0.6
ZNF554-202ENST00000588534 CARMIL1Q5VZK9 1371 aa11.29□□□□□ -0.6
ZNF554-202ENST00000588534 TRIM26Q12899 539 aaPredicted RBP11.29□□□□□ -0.6
ZNF554-202ENST00000588534 TTBK1Q5TCY1 1321 aaPredicted RBP11.28□□□□□ -0.6
ZNF554-202ENST00000588534 CDK11AQ9UQ88 783 aaPredicted RBP11.28□□□□□ -0.6
ZNF554-202ENST00000588534 TNIKQ9UKE5 1360 aa11.28□□□□□ -0.6
ZNF554-202ENST00000588534 DNAJC5BQ9UF47 199 aa11.27□□□□□ -0.6
ZNF554-202ENST00000588534 PCGF6Q9BYE7 350 aa11.25□□□□□ -0.61
ZNF554-202ENST00000588534 MRC2Q9UBG0 1479 aa11.25□□□□□ -0.61
ZNF554-202ENST00000588534 CLIP1P30622 1438 aa11.22□□□□□ -0.61
ZNF554-202ENST00000588534 TDRD9Q8NDG6 1382 aaKnown RBP11.21□□□□□ -0.61
ZNF554-202ENST00000588534 FGD5Q6ZNL6 1462 aa11.21□□□□□ -0.62
ZNF554-202ENST00000588534 NESP48681 1621 aa11.2□□□□□ -0.62
ZNF554-202ENST00000588534 ZEB1P37275 1124 aaPredicted RBP11.2□□□□□ -0.62
ZNF554-202ENST00000588534 P3H3Q8IVL6 736 aa11.19□□□□□ -0.62
ZNF554-202ENST00000588534 NPM1P06748 294 aaKnown RBP eCLIP11.18□□□□□ -0.62
ZNF554-202ENST00000588534 DNMBPQ6XZF7 1577 aa11.17□□□□□ -0.62
ZNF554-202ENST00000588534 IFT140Q96RY7 1462 aa11.17□□□□□ -0.62
ZNF554-202ENST00000588534 RAPGEF2Q9Y4G8 1499 aa11.17□□□□□ -0.62
ZNF554-202ENST00000588534 TOPBP1Q92547 1522 aa11.16□□□□□ -0.62
ZNF554-202ENST00000588534 CEP162Q5TB80 1403 aa11.16□□□□□ -0.62
ZNF554-202ENST00000588534 TOP2BQ02880 1626 aa11.15□□□□□ -0.62
ZNF554-202ENST00000588534 GAPVD1Q14C86 1478 aa11.14□□□□□ -0.63
ZNF554-202ENST00000588534 PPARGC1BQ86YN6 1023 aaKnown RBP11.13□□□□□ -0.63
ZNF554-202ENST00000588534 FHAD1B1AJZ9 1412 aa11.12□□□□□ -0.63
ZNF554-202ENST00000588534 CARMIL2Q6F5E8 1435 aa11.11□□□□□ -0.63
ZNF554-202ENST00000588534 IGF1RP08069 1367 aa11.11□□□□□ -0.63
ZNF554-202ENST00000588534 CUX1P39880 1505 aa11.11□□□□□ -0.63
ZNF554-202ENST00000588534 GRIN2BQ13224 1484 aa11.1□□□□□ -0.63
ZNF554-202ENST00000588534 CCER1Q8TC90 406 aaPredicted RBP11.1□□□□□ -0.63
ZNF554-202ENST00000588534 POLA1P09884 1462 aaPredicted RBP11.09□□□□□ -0.63
ZNF554-202ENST00000588534 RAD54L2Q9Y4B4 1467 aa11.09□□□□□ -0.63
ZNF554-202ENST00000588534 SYNJ1O43426 1573 aa11.09□□□□□ -0.63
ZNF554-202ENST00000588534 MYT1LQ9UL68 1186 aa11.08□□□□□ -0.64
ZNF554-202ENST00000588534 FAM50AQ14320 339 aaKnown RBP11.06□□□□□ -0.64
ZNF554-202ENST00000588534 ABCA10Q8WWZ4 1543 aa11.06□□□□□ -0.64
ZNF554-202ENST00000588534 MTUS2Q5JR59 1369 aa11.05□□□□□ -0.64
ZNF554-202ENST00000588534 FMN1Q68DA7 1419 aa11.04□□□□□ -0.64
ZNF554-202ENST00000588534 PLEKHD1A6NEE1 506 aa11.04□□□□□ -0.64
ZNF554-202ENST00000588534 ITGAEP38570 1179 aa11.04□□□□□ -0.64
ZNF554-202ENST00000588534 PRDM2Q13029 1718 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms