RNA–Protein interactions for RNA: ENST00000588284.1

CHMP1B-202, Transcript of charged multivesicular body protein 1B, humanhuman

TSL 3

Gene CHMP1B, Length 435 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1B-202ENST00000588284 NISCHQ9Y2I1 1504 aa23.84■■□□□ 1.41
CHMP1B-202ENST00000588284 AEBP2Q6ZN18 517 aaPredicted RBP23.7■■□□□ 1.38
CHMP1B-202ENST00000588284 CHIC1Q5VXU3 224 aa23.24■■□□□ 1.31
CHMP1B-202ENST00000588284 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
CHMP1B-202ENST00000588284 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
CHMP1B-202ENST00000588284 SENP3Q9H4L4 574 aaPredicted RBP20.2■□□□□ 0.82
CHMP1B-202ENST00000588284 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
CHMP1B-202ENST00000588284 DCAF8L2P0C7V8 631 aa19.81■□□□□ 0.76
CHMP1B-202ENST00000588284 ABCC9O60706 1549 aa19.78■□□□□ 0.76
CHMP1B-202ENST00000588284 DCAF1Q9Y4B6 1507 aa19.76■□□□□ 0.75
CHMP1B-202ENST00000588284 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
CHMP1B-202ENST00000588284 NACADO15069 1562 aa19.49■□□□□ 0.71
CHMP1B-202ENST00000588284 RB1CC1Q8TDY2 1594 aa19.33■□□□□ 0.69
CHMP1B-202ENST00000588284 SHROOM4Q9ULL8 1493 aa19.3■□□□□ 0.68
CHMP1B-202ENST00000588284 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
CHMP1B-202ENST00000588284 PLPPR3Q6T4P5 718 aa18.93■□□□□ 0.62
CHMP1B-202ENST00000588284 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.59
CHMP1B-202ENST00000588284 FOXD1Q16676 465 aa18.68■□□□□ 0.58
CHMP1B-202ENST00000588284 PABPN1Q86U42 306 aaKnown RBP eCLIP18.67■□□□□ 0.58
CHMP1B-202ENST00000588284 BICRAQ9NZM4 1560 aa18.65■□□□□ 0.58
CHMP1B-202ENST00000588284 DNAJC5BQ9UF47 199 aa18.62■□□□□ 0.57
CHMP1B-202ENST00000588284 SUPT5HO00267 1087 aaKnown RBP18.61■□□□□ 0.57
CHMP1B-202ENST00000588284 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
CHMP1B-202ENST00000588284 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
CHMP1B-202ENST00000588284 BAZ1AQ9NRL2 1556 aaPredicted RBP18.44■□□□□ 0.54
CHMP1B-202ENST00000588284 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
CHMP1B-202ENST00000588284 SMARCA4P51532 1647 aa18.31■□□□□ 0.52
CHMP1B-202ENST00000588284 WIZO95785 1651 aa18.18■□□□□ 0.5
CHMP1B-202ENST00000588284 EIF4G1Q04637 1599 aaKnown RBP18.13■□□□□ 0.49
CHMP1B-202ENST00000588284 PEG3Q9GZU2 1588 aa18.13■□□□□ 0.49
CHMP1B-202ENST00000588284 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
CHMP1B-202ENST00000588284 ATAD2BQ9ULI0 1458 aa18.09■□□□□ 0.49
CHMP1B-202ENST00000588284 TOP2AP11388 1531 aaKnown RBP18.05■□□□□ 0.48
CHMP1B-202ENST00000588284 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
CHMP1B-202ENST00000588284 ADRA2BP18089 450 aa17.99■□□□□ 0.47
CHMP1B-202ENST00000588284 BAZ1BQ9UIG0 1483 aaKnown RBP17.98■□□□□ 0.47
CHMP1B-202ENST00000588284 PPP6R1Q9UPN7 881 aa17.97■□□□□ 0.47
CHMP1B-202ENST00000588284 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
CHMP1B-202ENST00000588284 CC2D2AQ9P2K1 1620 aa17.89■□□□□ 0.45
CHMP1B-202ENST00000588284 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
CHMP1B-202ENST00000588284 PIAS4Q8N2W9 510 aaPredicted RBP17.68■□□□□ 0.42
CHMP1B-202ENST00000588284 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
CHMP1B-202ENST00000588284 CADPSQ9ULU8 1353 aa17.54■□□□□ 0.4
CHMP1B-202ENST00000588284 CFTRP13569 1480 aa17.54■□□□□ 0.4
CHMP1B-202ENST00000588284 DNAJC5Q9H3Z4 198 aa17.52■□□□□ 0.4
CHMP1B-202ENST00000588284 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.38
CHMP1B-202ENST00000588284 ABCC8Q09428 1581 aa17.37■□□□□ 0.37
CHMP1B-202ENST00000588284 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
CHMP1B-202ENST00000588284 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
CHMP1B-202ENST00000588284 PDS5BQ9NTI5 1447 aa17.31■□□□□ 0.36
CHMP1B-202ENST00000588284 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
CHMP1B-202ENST00000588284 NESP48681 1621 aa17.29■□□□□ 0.36
CHMP1B-202ENST00000588284 MSH5O43196 834 aa17.27■□□□□ 0.36
CHMP1B-202ENST00000588284 TOP2BQ02880 1626 aa17.22■□□□□ 0.35
CHMP1B-202ENST00000588284 SYNJ1O43426 1573 aa17.22■□□□□ 0.35
CHMP1B-202ENST00000588284 CEP164Q9UPV0 1460 aa17.2■□□□□ 0.34
CHMP1B-202ENST00000588284 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
CHMP1B-202ENST00000588284 CUX1P39880 1505 aa17.18■□□□□ 0.34
CHMP1B-202ENST00000588284 EEA1Q15075 1411 aa17.17■□□□□ 0.34
CHMP1B-202ENST00000588284 FAM9AQ8IZU1 332 aaPredicted RBP17.17■□□□□ 0.34
CHMP1B-202ENST00000588284 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
CHMP1B-202ENST00000588284 DNMBPQ6XZF7 1577 aa17.1■□□□□ 0.33
CHMP1B-202ENST00000588284 TOPBP1Q92547 1522 aa17.08■□□□□ 0.32
CHMP1B-202ENST00000588284 SOGA1O94964 1423 aa17.08■□□□□ 0.32
CHMP1B-202ENST00000588284 LOC105371045A0A1W2PR82 267 aa17.05■□□□□ 0.32
CHMP1B-202ENST00000588284 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
CHMP1B-202ENST00000588284 URB2Q14146 1524 aaKnown RBP17.04■□□□□ 0.32
CHMP1B-202ENST00000588284 FGD5Q6ZNL6 1462 aa17.04■□□□□ 0.32
CHMP1B-202ENST00000588284 ERCC6Q03468 1493 aa17.03■□□□□ 0.32
CHMP1B-202ENST00000588284 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
CHMP1B-202ENST00000588284 KIF27Q86VH2 1401 aa17.01■□□□□ 0.31
CHMP1B-202ENST00000588284 RUSC2Q8N2Y8 1516 aa17■□□□□ 0.31
CHMP1B-202ENST00000588284 POLA1P09884 1462 aaPredicted RBP16.97■□□□□ 0.31
CHMP1B-202ENST00000588284 CUX2O14529 1486 aa16.93■□□□□ 0.3
CHMP1B-202ENST00000588284 ABCA10Q8WWZ4 1543 aa16.92■□□□□ 0.3
CHMP1B-202ENST00000588284 POTEDQ86YR6 584 aa16.91■□□□□ 0.3
CHMP1B-202ENST00000588284 RAD54L2Q9Y4B4 1467 aa16.91■□□□□ 0.3
CHMP1B-202ENST00000588284 WDR62O43379 1518 aa16.9■□□□□ 0.3
CHMP1B-202ENST00000588284 EHMT2Q96KQ7 1210 aa16.86■□□□□ 0.29
CHMP1B-202ENST00000588284 IGF1RP08069 1367 aa16.86■□□□□ 0.29
CHMP1B-202ENST00000588284 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
CHMP1B-202ENST00000588284 GOLGA3Q08378 1498 aa16.85■□□□□ 0.29
CHMP1B-202ENST00000588284 KIF21BO75037 1637 aa16.83■□□□□ 0.28
CHMP1B-202ENST00000588284 IFT140Q96RY7 1462 aa16.83■□□□□ 0.28
CHMP1B-202ENST00000588284 TNIKQ9UKE5 1360 aa16.82■□□□□ 0.28
CHMP1B-202ENST00000588284 THOC2Q8NI27 1593 aaKnown RBP16.81■□□□□ 0.28
CHMP1B-202ENST00000588284 PRXQ9BXM0 1461 aa16.81■□□□□ 0.28
CHMP1B-202ENST00000588284 TDRD9Q8NDG6 1382 aaKnown RBP16.79■□□□□ 0.28
CHMP1B-202ENST00000588284 TARBP1Q13395 1621 aaKnown RBP16.79■□□□□ 0.28
CHMP1B-202ENST00000588284 CARMIL1Q5VZK9 1371 aa16.78■□□□□ 0.28
CHMP1B-202ENST00000588284 GAPVD1Q14C86 1478 aa16.78■□□□□ 0.28
CHMP1B-202ENST00000588284 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.28
CHMP1B-202ENST00000588284 WDR97A6NE52 1622 aa16.76■□□□□ 0.27
CHMP1B-202ENST00000588284 RAPGEF2Q9Y4G8 1499 aa16.73■□□□□ 0.27
CHMP1B-202ENST00000588284 ABCA5Q8WWZ7 1642 aa16.72■□□□□ 0.27
CHMP1B-202ENST00000588284 AQRO60306 1485 aaKnown RBP eCLIP16.68■□□□□ 0.26
CHMP1B-202ENST00000588284 GRIN2BQ13224 1484 aa16.68■□□□□ 0.26
CHMP1B-202ENST00000588284 CUL7Q14999 1698 aa16.68■□□□□ 0.26
CHMP1B-202ENST00000588284 PPP4R3CPQ6ZMV5 832 aa16.66■□□□□ 0.26
CHMP1B-202ENST00000588284 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms