RNA–Protein interactions for RNA: ENST00000584558.5

ITGB4-212, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-212ENST00000584558 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
ITGB4-212ENST00000584558 CCDC180Q9P1Z9 1646 aa23.45■■□□□ 1.34
ITGB4-212ENST00000584558 ZCCHC6Q5VYS8 1495 aaKnown RBP22.8■■□□□ 1.24
ITGB4-212ENST00000584558 DCAF1Q9Y4B6 1507 aa22.37■■□□□ 1.17
ITGB4-212ENST00000584558 ABCC9O60706 1549 aa22.37■■□□□ 1.17
ITGB4-212ENST00000584558 DCAF8L2P0C7V8 631 aa22.31■■□□□ 1.16
ITGB4-212ENST00000584558 SHROOM4Q9ULL8 1493 aa22.22■■□□□ 1.15
ITGB4-212ENST00000584558 MYO15BQ96JP2 1530 aa21.98■■□□□ 1.11
ITGB4-212ENST00000584558 NACADO15069 1562 aa21.73■■□□□ 1.07
ITGB4-212ENST00000584558 SCRIBQ14160 1630 aa21.6■■□□□ 1.05
ITGB4-212ENST00000584558 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
ITGB4-212ENST00000584558 RB1CC1Q8TDY2 1594 aa21.46■■□□□ 1.03
ITGB4-212ENST00000584558 HRCP23327 699 aa21.39■■□□□ 1.01
ITGB4-212ENST00000584558 PABPN1Q86U42 306 aaKnown RBP eCLIP21.2■□□□□ 0.98
ITGB4-212ENST00000584558 UNC13AQ9UPW8 1703 aa21.16■□□□□ 0.98
ITGB4-212ENST00000584558 RSF1Q96T23 1441 aaPredicted RBP21.1■□□□□ 0.97
ITGB4-212ENST00000584558 PPARGC1BQ86YN6 1023 aaKnown RBP21.03■□□□□ 0.96
ITGB4-212ENST00000584558 CECR2Q9BXF3 1484 aa21.02■□□□□ 0.95
ITGB4-212ENST00000584558 PELP1Q8IZL8 1130 aaKnown RBP20.98■□□□□ 0.95
ITGB4-212ENST00000584558 MROH2BQ7Z745 1585 aa20.93■□□□□ 0.94
ITGB4-212ENST00000584558 PCGF6Q9BYE7 350 aa20.91■□□□□ 0.94
ITGB4-212ENST00000584558 BICRAQ9NZM4 1560 aa20.91■□□□□ 0.94
ITGB4-212ENST00000584558 BAZ1AQ9NRL2 1556 aaPredicted RBP20.83■□□□□ 0.93
ITGB4-212ENST00000584558 CHIC1Q5VXU3 224 aa20.79■□□□□ 0.92
ITGB4-212ENST00000584558 WIZO95785 1651 aa20.78■□□□□ 0.92
ITGB4-212ENST00000584558 SMARCA4P51532 1647 aa20.74■□□□□ 0.91
ITGB4-212ENST00000584558 TOP2AP11388 1531 aaKnown RBP20.54■□□□□ 0.88
ITGB4-212ENST00000584558 PEG3Q9GZU2 1588 aa20.49■□□□□ 0.87
ITGB4-212ENST00000584558 EIF4G1Q04637 1599 aaKnown RBP20.42■□□□□ 0.86
ITGB4-212ENST00000584558 SCAF1Q9H7N4 1312 aaKnown RBP20.41■□□□□ 0.86
ITGB4-212ENST00000584558 SMARCA2P51531 1590 aa20.39■□□□□ 0.85
ITGB4-212ENST00000584558 CCDC88BA6NC98 1476 aa20.34■□□□□ 0.85
ITGB4-212ENST00000584558 ATAD2BQ9ULI0 1458 aa20.3■□□□□ 0.84
ITGB4-212ENST00000584558 DNAJC5BQ9UF47 199 aa20.3■□□□□ 0.84
ITGB4-212ENST00000584558 MYT1Q01538 1121 aa20.22■□□□□ 0.83
ITGB4-212ENST00000584558 TRIM41Q8WV44 630 aa20.17■□□□□ 0.82
ITGB4-212ENST00000584558 BAZ1BQ9UIG0 1483 aaKnown RBP20.17■□□□□ 0.82
ITGB4-212ENST00000584558 TRIM26Q12899 539 aaPredicted RBP20.09■□□□□ 0.81
ITGB4-212ENST00000584558 HMGXB3Q12766 1538 aa20.08■□□□□ 0.8
ITGB4-212ENST00000584558 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
ITGB4-212ENST00000584558 CC2D2AQ9P2K1 1620 aa20.04■□□□□ 0.8
ITGB4-212ENST00000584558 ABCC8Q09428 1581 aa20.03■□□□□ 0.8
ITGB4-212ENST00000584558 LOC105371045A0A1W2PR82 267 aa20.01■□□□□ 0.79
ITGB4-212ENST00000584558 ZEB1P37275 1124 aaPredicted RBP19.99■□□□□ 0.79
ITGB4-212ENST00000584558 FAM9AQ8IZU1 332 aaPredicted RBP19.82■□□□□ 0.76
ITGB4-212ENST00000584558 ACIN1Q9UKV3 1341 aaKnown RBP19.81■□□□□ 0.76
ITGB4-212ENST00000584558 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.76
ITGB4-212ENST00000584558 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
ITGB4-212ENST00000584558 NEUROD1Q13562 356 aa19.77■□□□□ 0.76
ITGB4-212ENST00000584558 GTF3C3Q9Y5Q9 886 aa19.72■□□□□ 0.75
ITGB4-212ENST00000584558 CFTRP13569 1480 aa19.72■□□□□ 0.75
ITGB4-212ENST00000584558 SOGA1O94964 1423 aa19.7■□□□□ 0.74
ITGB4-212ENST00000584558 PRDM2Q13029 1718 aa19.67■□□□□ 0.74
ITGB4-212ENST00000584558 TOP2BQ02880 1626 aa19.66■□□□□ 0.74
ITGB4-212ENST00000584558 EEA1Q15075 1411 aa19.66■□□□□ 0.74
ITGB4-212ENST00000584558 BIVM-ERCC5R4GMW8 1640 aa19.66■□□□□ 0.74
ITGB4-212ENST00000584558 RUSC2Q8N2Y8 1516 aa19.64■□□□□ 0.73
ITGB4-212ENST00000584558 CENPBP07199 599 aaPredicted RBP19.56■□□□□ 0.72
ITGB4-212ENST00000584558 CADPSQ9ULU8 1353 aa19.55■□□□□ 0.72
ITGB4-212ENST00000584558 CUX1P39880 1505 aa19.55■□□□□ 0.72
ITGB4-212ENST00000584558 NESP48681 1621 aa19.54■□□□□ 0.72
ITGB4-212ENST00000584558 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.72
ITGB4-212ENST00000584558 CSRNP3Q8WYN3 585 aa19.52■□□□□ 0.71
ITGB4-212ENST00000584558 KIF21BO75037 1637 aa19.46■□□□□ 0.71
ITGB4-212ENST00000584558 TNIKQ9UKE5 1360 aa19.43■□□□□ 0.7
ITGB4-212ENST00000584558 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
ITGB4-212ENST00000584558 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
ITGB4-212ENST00000584558 DIEXFQ68CQ4 756 aaKnown RBP19.37■□□□□ 0.69
ITGB4-212ENST00000584558 CEP162Q5TB80 1403 aa19.35■□□□□ 0.69
ITGB4-212ENST00000584558 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
ITGB4-212ENST00000584558 LAMC3Q9Y6N6 1575 aa19.33■□□□□ 0.68
ITGB4-212ENST00000584558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.29■□□□□ 0.68
ITGB4-212ENST00000584558 RAPGEF2Q9Y4G8 1499 aa19.28■□□□□ 0.68
ITGB4-212ENST00000584558 PRXQ9BXM0 1461 aa19.27■□□□□ 0.68
ITGB4-212ENST00000584558 CCER1Q8TC90 406 aaPredicted RBP19.26■□□□□ 0.67
ITGB4-212ENST00000584558 ERICH3Q5RHP9 1530 aa19.26■□□□□ 0.67
ITGB4-212ENST00000584558 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
ITGB4-212ENST00000584558 FGD5Q6ZNL6 1462 aa19.25■□□□□ 0.67
ITGB4-212ENST00000584558 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
ITGB4-212ENST00000584558 UBTFP17480 764 aaKnown RBP19.24■□□□□ 0.67
ITGB4-212ENST00000584558 TOPBP1Q92547 1522 aa19.19■□□□□ 0.66
ITGB4-212ENST00000584558 YTHDC1Q96MU7 727 aaKnown RBP19.19■□□□□ 0.66
ITGB4-212ENST00000584558 CUX2O14529 1486 aa19.16■□□□□ 0.66
ITGB4-212ENST00000584558 URB2Q14146 1524 aaKnown RBP19.13■□□□□ 0.65
ITGB4-212ENST00000584558 POLA1P09884 1462 aaPredicted RBP19.13■□□□□ 0.65
ITGB4-212ENST00000584558 KIF21AQ7Z4S6 1674 aa19.12■□□□□ 0.65
ITGB4-212ENST00000584558 CLIP1P30622 1438 aa19.11■□□□□ 0.65
ITGB4-212ENST00000584558 PDS5BQ9NTI5 1447 aa19.11■□□□□ 0.65
ITGB4-212ENST00000584558 IGF1RP08069 1367 aa19.1■□□□□ 0.65
ITGB4-212ENST00000584558 ABCA10Q8WWZ4 1543 aa19.1■□□□□ 0.65
ITGB4-212ENST00000584558 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
ITGB4-212ENST00000584558 WDR97A6NE52 1622 aa19.08■□□□□ 0.64
ITGB4-212ENST00000584558 RAD54L2Q9Y4B4 1467 aa19.07■□□□□ 0.64
ITGB4-212ENST00000584558 VPS8Q8N3P4 1428 aa19.01■□□□□ 0.63
ITGB4-212ENST00000584558 TTBK1Q5TCY1 1321 aaPredicted RBP18.99■□□□□ 0.63
ITGB4-212ENST00000584558 BCL11AQ9H165 835 aa18.99■□□□□ 0.63
ITGB4-212ENST00000584558 CARMIL1Q5VZK9 1371 aa18.97■□□□□ 0.63
ITGB4-212ENST00000584558 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
ITGB4-212ENST00000584558 ABCA5Q8WWZ7 1642 aa18.95■□□□□ 0.62
ITGB4-212ENST00000584558 CUL7Q14999 1698 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms