RNA–Protein interactions for RNA: ENST00000582482.1

CDK5RAP3-225, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 2,455 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-225ENST00000582482 NISCHQ9Y2I1 1504 aa22.59■■□□□ 1.21
CDK5RAP3-225ENST00000582482 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
CDK5RAP3-225ENST00000582482 AEBP2Q6ZN18 517 aaPredicted RBP19.61■□□□□ 0.73
CDK5RAP3-225ENST00000582482 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
CDK5RAP3-225ENST00000582482 DCAF8L2P0C7V8 631 aa19.22■□□□□ 0.67
CDK5RAP3-225ENST00000582482 CCDC180Q9P1Z9 1646 aa19.1■□□□□ 0.65
CDK5RAP3-225ENST00000582482 SUPT5HO00267 1087 aaKnown RBP19.06■□□□□ 0.64
CDK5RAP3-225ENST00000582482 ZCCHC6Q5VYS8 1495 aaKnown RBP19.05■□□□□ 0.64
CDK5RAP3-225ENST00000582482 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
CDK5RAP3-225ENST00000582482 DCAF1Q9Y4B6 1507 aa18.29■□□□□ 0.52
CDK5RAP3-225ENST00000582482 ABCC9O60706 1549 aa18.28■□□□□ 0.52
CDK5RAP3-225ENST00000582482 SCRIBQ14160 1630 aa18.25■□□□□ 0.51
CDK5RAP3-225ENST00000582482 LOC105371045A0A1W2PR82 267 aa17.94■□□□□ 0.46
CDK5RAP3-225ENST00000582482 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
CDK5RAP3-225ENST00000582482 CECR2Q9BXF3 1484 aa17.85■□□□□ 0.45
CDK5RAP3-225ENST00000582482 RB1CC1Q8TDY2 1594 aa17.79■□□□□ 0.44
CDK5RAP3-225ENST00000582482 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
CDK5RAP3-225ENST00000582482 NACADO15069 1562 aa17.73■□□□□ 0.43
CDK5RAP3-225ENST00000582482 FAM9AQ8IZU1 332 aaPredicted RBP17.71■□□□□ 0.43
CDK5RAP3-225ENST00000582482 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
CDK5RAP3-225ENST00000582482 PCGF6Q9BYE7 350 aa17.66■□□□□ 0.42
CDK5RAP3-225ENST00000582482 WIZO95785 1651 aa17.63■□□□□ 0.41
CDK5RAP3-225ENST00000582482 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
CDK5RAP3-225ENST00000582482 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.43e-10■■■□□ 15.2
CDK5RAP3-225ENST00000582482 PHF23Q9BUL5 403 aaPredicted RBP17.56■□□□□ 0.4
CDK5RAP3-225ENST00000582482 UNC13AQ9UPW8 1703 aa17.46■□□□□ 0.39
CDK5RAP3-225ENST00000582482 PPARGC1BQ86YN6 1023 aaKnown RBP17.39■□□□□ 0.37
CDK5RAP3-225ENST00000582482 HRCP23327 699 aa17.35■□□□□ 0.37
CDK5RAP3-225ENST00000582482 BAZ1AQ9NRL2 1556 aaPredicted RBP17.3■□□□□ 0.36
CDK5RAP3-225ENST00000582482 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
CDK5RAP3-225ENST00000582482 ABCC8Q09428 1581 aa17.25■□□□□ 0.35
CDK5RAP3-225ENST00000582482 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
CDK5RAP3-225ENST00000582482 CCDC88BA6NC98 1476 aa17.21■□□□□ 0.35
CDK5RAP3-225ENST00000582482 EIF4G1Q04637 1599 aaKnown RBP17.16■□□□□ 0.34
CDK5RAP3-225ENST00000582482 TOP2AP11388 1531 aaKnown RBP17.15■□□□□ 0.34
CDK5RAP3-225ENST00000582482 SMARCA2P51531 1590 aa17.14■□□□□ 0.33
CDK5RAP3-225ENST00000582482 TTBK1Q5TCY1 1321 aaPredicted RBP17.11■□□□□ 0.33
CDK5RAP3-225ENST00000582482 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
CDK5RAP3-225ENST00000582482 SOGA1O94964 1423 aa17.02■□□□□ 0.32
CDK5RAP3-225ENST00000582482 RUSC2Q8N2Y8 1516 aa17.02■□□□□ 0.31
CDK5RAP3-225ENST00000582482 ATAD2BQ9ULI0 1458 aa16.88■□□□□ 0.29
CDK5RAP3-225ENST00000582482 RANGAP1P46060 587 aaPredicted RBP16.85■□□□□ 0.29
CDK5RAP3-225ENST00000582482 BAZ1BQ9UIG0 1483 aaKnown RBP16.83■□□□□ 0.28
CDK5RAP3-225ENST00000582482 UBTFP17480 764 aaKnown RBP16.82■□□□□ 0.28
CDK5RAP3-225ENST00000582482 SYNJ1O43426 1573 aa16.8■□□□□ 0.28
CDK5RAP3-225ENST00000582482 WRNQ14191 1432 aaPredicted RBP eCLIP16.79■□□□□ 0.28
CDK5RAP3-225ENST00000582482 CSRNP3Q8WYN3 585 aa16.77■□□□□ 0.28
CDK5RAP3-225ENST00000582482 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.27
CDK5RAP3-225ENST00000582482 CEP162Q5TB80 1403 aa16.75■□□□□ 0.27
CDK5RAP3-225ENST00000582482 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.75■□□□□ 0.27
CDK5RAP3-225ENST00000582482 TNIKQ9UKE5 1360 aa16.61■□□□□ 0.25
CDK5RAP3-225ENST00000582482 GOLGA3Q08378 1498 aa16.57■□□□□ 0.24
CDK5RAP3-225ENST00000582482 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
CDK5RAP3-225ENST00000582482 CCER1Q8TC90 406 aaPredicted RBP16.55■□□□□ 0.24
CDK5RAP3-225ENST00000582482 EEA1Q15075 1411 aa16.51■□□□□ 0.23
CDK5RAP3-225ENST00000582482 NCAPD3P42695 1498 aa16.47■□□□□ 0.23
CDK5RAP3-225ENST00000582482 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
CDK5RAP3-225ENST00000582482 HNRNPUL2Q1KMD3 747 aaKnown RBP16.46■□□□□ 0.23
CDK5RAP3-225ENST00000582482 CUX1P39880 1505 aa16.46■□□□□ 0.23
CDK5RAP3-225ENST00000582482 CLIP1P30622 1438 aa16.46■□□□□ 0.22
CDK5RAP3-225ENST00000582482 TOP2BQ02880 1626 aa16.45■□□□□ 0.22
CDK5RAP3-225ENST00000582482 ZEB1P37275 1124 aaPredicted RBP16.44■□□□□ 0.22
CDK5RAP3-225ENST00000582482 KIF21BO75037 1637 aa16.41■□□□□ 0.22
CDK5RAP3-225ENST00000582482 HMGXB3Q12766 1538 aa16.41■□□□□ 0.22
CDK5RAP3-225ENST00000582482 BIVM-ERCC5R4GMW8 1640 aa16.37■□□□□ 0.21
CDK5RAP3-225ENST00000582482 DNAJC5BQ9UF47 199 aa16.36■□□□□ 0.21
CDK5RAP3-225ENST00000582482 SENP3Q9H4L4 574 aaPredicted RBP16.35■□□□□ 0.21
CDK5RAP3-225ENST00000582482 CFTRP13569 1480 aa16.34■□□□□ 0.21
CDK5RAP3-225ENST00000582482 PLPPR3Q6T4P5 718 aa16.33■□□□□ 0.2
CDK5RAP3-225ENST00000582482 CC2D2AQ9P2K1 1620 aa16.32■□□□□ 0.2
CDK5RAP3-225ENST00000582482 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
CDK5RAP3-225ENST00000582482 KANK4Q5T7N3 995 aaPredicted RBP16.28■□□□□ 0.2
CDK5RAP3-225ENST00000582482 NESP48681 1621 aa16.27■□□□□ 0.19
CDK5RAP3-225ENST00000582482 PRXQ9BXM0 1461 aa16.26■□□□□ 0.19
CDK5RAP3-225ENST00000582482 APLP2Q06481 763 aa16.25■□□□□ 0.19
CDK5RAP3-225ENST00000582482 ARAP1Q96P48 1450 aa16.24■□□□□ 0.19
CDK5RAP3-225ENST00000582482 CUX2O14529 1486 aa16.24■□□□□ 0.19
CDK5RAP3-225ENST00000582482 KIF27Q86VH2 1401 aa16.22■□□□□ 0.19
CDK5RAP3-225ENST00000582482 CADPSQ9ULU8 1353 aa16.22■□□□□ 0.19
CDK5RAP3-225ENST00000582482 P3H3Q8IVL6 736 aa16.21■□□□□ 0.19
CDK5RAP3-225ENST00000582482 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
CDK5RAP3-225ENST00000582482 ITGAEP38570 1179 aa16.17■□□□□ 0.18
CDK5RAP3-225ENST00000582482 RAD54L2Q9Y4B4 1467 aa16.16■□□□□ 0.18
CDK5RAP3-225ENST00000582482 IGF1RP08069 1367 aa16.15■□□□□ 0.18
CDK5RAP3-225ENST00000582482 ERICH3Q5RHP9 1530 aa16.13■□□□□ 0.17
CDK5RAP3-225ENST00000582482 FANCD2Q9BXW9 1451 aa16.12■□□□□ 0.17
CDK5RAP3-225ENST00000582482 ARHGAP35Q9NRY4 1499 aa16.12■□□□□ 0.17
CDK5RAP3-225ENST00000582482 ATP1B4Q9UN42 357 aaPredicted RBP16.1■□□□□ 0.17
CDK5RAP3-225ENST00000582482 PRDM2Q13029 1718 aa16.1■□□□□ 0.17
CDK5RAP3-225ENST00000582482 DIEXFQ68CQ4 756 aaKnown RBP16.08■□□□□ 0.16
CDK5RAP3-225ENST00000582482 CARMIL1Q5VZK9 1371 aa16.06■□□□□ 0.16
CDK5RAP3-225ENST00000582482 SCAF1Q9H7N4 1312 aaKnown RBP16.03■□□□□ 0.16
CDK5RAP3-225ENST00000582482 POLA1P09884 1462 aaPredicted RBP16■□□□□ 0.15
CDK5RAP3-225ENST00000582482 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
CDK5RAP3-225ENST00000582482 TDRD9Q8NDG6 1382 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-225ENST00000582482 FHOD3Q2V2M9 1422 aa15.96■□□□□ 0.15
CDK5RAP3-225ENST00000582482 URB2Q14146 1524 aaKnown RBP15.95■□□□□ 0.14
CDK5RAP3-225ENST00000582482 ZNF316A6NFI3 1004 aaPredicted RBP15.94■□□□□ 0.14
CDK5RAP3-225ENST00000582482 YTHDC1Q96MU7 727 aaKnown RBP15.94■□□□□ 0.14
CDK5RAP3-225ENST00000582482 NEUROD1Q13562 356 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms