RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 CHIC1Q5VXU3 224 aa19.04■□□□□ 0.64
RFFL-207ENST00000580569 AEBP2Q6ZN18 517 aaPredicted RBP18.69■□□□□ 0.58
RFFL-207ENST00000580569 NISCHQ9Y2I1 1504 aa18.15■□□□□ 0.5
RFFL-207ENST00000580569 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
RFFL-207ENST00000580569 ABCC9O60706 1549 aa16.72■□□□□ 0.27
RFFL-207ENST00000580569 CCDC180Q9P1Z9 1646 aa16.55■□□□□ 0.24
RFFL-207ENST00000580569 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
RFFL-207ENST00000580569 RB1CC1Q8TDY2 1594 aa15.86■□□□□ 0.13
RFFL-207ENST00000580569 PLPPR3Q6T4P5 718 aa15.82■□□□□ 0.12
RFFL-207ENST00000580569 NACADO15069 1562 aa15.68■□□□□ 0.1
RFFL-207ENST00000580569 SENP3Q9H4L4 574 aaPredicted RBP15.64■□□□□ 0.09
RFFL-207ENST00000580569 UNC13AQ9UPW8 1703 aa15.6■□□□□ 0.09
RFFL-207ENST00000580569 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
RFFL-207ENST00000580569 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
RFFL-207ENST00000580569 MYO15BQ96JP2 1530 aa15.39■□□□□ 0.05
RFFL-207ENST00000580569 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
RFFL-207ENST00000580569 SHROOM4Q9ULL8 1493 aa15.23■□□□□ 0.03
RFFL-207ENST00000580569 CC2D2AQ9P2K1 1620 aa15.17■□□□□ 0.02
RFFL-207ENST00000580569 CECR2Q9BXF3 1484 aa15.14■□□□□ 0.01
RFFL-207ENST00000580569 DCAF1Q9Y4B6 1507 aa15.05■□□□□ -0
RFFL-207ENST00000580569 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ -0
RFFL-207ENST00000580569 DNAJC5Q9H3Z4 198 aa15.01□□□□□ -0.01
RFFL-207ENST00000580569 ZCCHC6Q5VYS8 1495 aaKnown RBP14.97□□□□□ -0.01
RFFL-207ENST00000580569 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
RFFL-207ENST00000580569 ADRA2BP18089 450 aa14.89□□□□□ -0.03
RFFL-207ENST00000580569 EHMT2Q96KQ7 1210 aa14.86□□□□□ -0.03
RFFL-207ENST00000580569 KCNA4P22459 653 aa14.79□□□□□ -0.04
RFFL-207ENST00000580569 CUX2O14529 1486 aa14.65□□□□□ -0.06
RFFL-207ENST00000580569 PPP6R1Q9UPN7 881 aa14.63□□□□□ -0.07
RFFL-207ENST00000580569 ERCC6Q03468 1493 aa14.47□□□□□ -0.09
RFFL-207ENST00000580569 FOXD1Q16676 465 aa14.46□□□□□ -0.09
RFFL-207ENST00000580569 NCAPD3P42695 1498 aa14.45□□□□□ -0.1
RFFL-207ENST00000580569 HMGXB3Q12766 1538 aa14.34□□□□□ -0.11
RFFL-207ENST00000580569 ATAD2BQ9ULI0 1458 aa14.33□□□□□ -0.12
RFFL-207ENST00000580569 SMARCA2P51531 1590 aa14.3□□□□□ -0.12
RFFL-207ENST00000580569 THOC2Q8NI27 1593 aaKnown RBP14.29□□□□□ -0.12
RFFL-207ENST00000580569 NESP48681 1621 aa14.28□□□□□ -0.12
RFFL-207ENST00000580569 SMARCA4P51532 1647 aa14.26□□□□□ -0.13
RFFL-207ENST00000580569 CSRNP3Q8WYN3 585 aa14.24□□□□□ -0.13
RFFL-207ENST00000580569 LAMC3Q9Y6N6 1575 aa14.22□□□□□ -0.13
RFFL-207ENST00000580569 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
RFFL-207ENST00000580569 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
RFFL-207ENST00000580569 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
RFFL-207ENST00000580569 BAZ1BQ9UIG0 1483 aaKnown RBP14.15□□□□□ -0.14
RFFL-207ENST00000580569 BAZ1AQ9NRL2 1556 aaPredicted RBP14.13□□□□□ -0.15
RFFL-207ENST00000580569 PDS5BQ9NTI5 1447 aa14.08□□□□□ -0.15
RFFL-207ENST00000580569 PPP4R3CPQ6ZMV5 832 aa14.08□□□□□ -0.16
RFFL-207ENST00000580569 TRIM41Q8WV44 630 aa14.08□□□□□ -0.16
RFFL-207ENST00000580569 WDR62O43379 1518 aa14□□□□□ -0.17
RFFL-207ENST00000580569 MRC2Q9UBG0 1479 aa13.99□□□□□ -0.17
RFFL-207ENST00000580569 MROH2BQ7Z745 1585 aa13.96□□□□□ -0.18
RFFL-207ENST00000580569 CADPSQ9ULU8 1353 aa13.96□□□□□ -0.18
RFFL-207ENST00000580569 NCBP3Q53F19 620 aaKnown RBP13.91□□□□□ -0.18
RFFL-207ENST00000580569 PIAS4Q8N2W9 510 aaPredicted RBP13.86□□□□□ -0.19
RFFL-207ENST00000580569 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
RFFL-207ENST00000580569 CEP164Q9UPV0 1460 aa13.85□□□□□ -0.19
RFFL-207ENST00000580569 SUPT5HO00267 1087 aaKnown RBP13.82□□□□□ -0.2
RFFL-207ENST00000580569 FANCD2Q9BXW9 1451 aa13.8□□□□□ -0.2
RFFL-207ENST00000580569 WIZO95785 1651 aa13.79□□□□□ -0.2
RFFL-207ENST00000580569 NPM3O75607 178 aaKnown RBP13.78□□□□□ -0.2
RFFL-207ENST00000580569 RIMBP3CA6NJZ7 1639 aa13.77□□□□□ -0.21
RFFL-207ENST00000580569 RIMBP3BA6NNM3 1639 aa13.77□□□□□ -0.21
RFFL-207ENST00000580569 RIMBP3Q9UFD9 1639 aa13.77□□□□□ -0.21
RFFL-207ENST00000580569 CFTRP13569 1480 aa13.75□□□□□ -0.21
RFFL-207ENST00000580569 PRDM2Q13029 1718 aa13.72□□□□□ -0.21
RFFL-207ENST00000580569 URB2Q14146 1524 aaKnown RBP13.71□□□□□ -0.21
RFFL-207ENST00000580569 ARHGEF11O15085 1522 aa13.67□□□□□ -0.22
RFFL-207ENST00000580569 RSF1Q96T23 1441 aaPredicted RBP13.65□□□□□ -0.22
RFFL-207ENST00000580569 ZBTB22O15209 634 aa13.64□□□□□ -0.23
RFFL-207ENST00000580569 IFT140Q96RY7 1462 aa13.6□□□□□ -0.23
RFFL-207ENST00000580569 TOP2AP11388 1531 aaKnown RBP13.59□□□□□ -0.23
RFFL-207ENST00000580569 ZNF608Q9ULD9 1512 aaPredicted RBP13.58□□□□□ -0.24
RFFL-207ENST00000580569 CHD1O14646 1710 aa13.54□□□□□ -0.24
RFFL-207ENST00000580569 EIF4G3O43432 1585 aaKnown RBP13.54□□□□□ -0.24
RFFL-207ENST00000580569 CYB5RLQ6IPT4 315 aa13.51□□□□□ -0.25
RFFL-207ENST00000580569 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
RFFL-207ENST00000580569 TOPBP1Q92547 1522 aa13.5□□□□□ -0.25
RFFL-207ENST00000580569 ARAP1Q96P48 1450 aa13.49□□□□□ -0.25
RFFL-207ENST00000580569 TARBP1Q13395 1621 aaKnown RBP13.46□□□□□ -0.25
RFFL-207ENST00000580569 CNKSR2Q8WXI2 1034 aa13.46□□□□□ -0.25
RFFL-207ENST00000580569 DNMBPQ6XZF7 1577 aa13.45□□□□□ -0.26
RFFL-207ENST00000580569 TRHP20396 242 aaPredicted RBP13.44□□□□□ -0.26
RFFL-207ENST00000580569 CCDC88BA6NC98 1476 aa13.41□□□□□ -0.26
RFFL-207ENST00000580569 AQRO60306 1485 aaKnown RBP eCLIP13.39□□□□□ -0.27
RFFL-207ENST00000580569 WDR97A6NE52 1622 aa13.35□□□□□ -0.27
RFFL-207ENST00000580569 CLASP1Q7Z460 1538 aa13.35□□□□□ -0.27
RFFL-207ENST00000580569 SLC24A1O60721 1099 aa13.35□□□□□ -0.27
RFFL-207ENST00000580569 POLA1P09884 1462 aaPredicted RBP13.35□□□□□ -0.27
RFFL-207ENST00000580569 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
RFFL-207ENST00000580569 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
RFFL-207ENST00000580569 SYNJ1O43426 1573 aa13.3□□□□□ -0.28
RFFL-207ENST00000580569 FBLN2P98095 1184 aa13.3□□□□□ -0.28
RFFL-207ENST00000580569 MAGI1Q96QZ7 1491 aaPredicted RBP13.27□□□□□ -0.29
RFFL-207ENST00000580569 SNAPC4Q5SXM2 1469 aa13.26□□□□□ -0.29
RFFL-207ENST00000580569 RAD54L2Q9Y4B4 1467 aa13.25□□□□□ -0.29
RFFL-207ENST00000580569 RTN4Q9NQC3 1192 aaKnown RBP13.25□□□□□ -0.29
RFFL-207ENST00000580569 SOGA1O94964 1423 aa13.24□□□□□ -0.29
RFFL-207ENST00000580569 TDRD9Q8NDG6 1382 aaKnown RBP13.23□□□□□ -0.29
RFFL-207ENST00000580569 SYNJ2O15056 1496 aa13.21□□□□□ -0.3
RFFL-207ENST00000580569 CHMP7Q8WUX9 453 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms