RNA–Protein interactions for RNA: ENST00000578557.1

PPP4R1-210, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-210ENST00000578557 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
PPP4R1-210ENST00000578557 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
PPP4R1-210ENST00000578557 NISCHQ9Y2I1 1504 aa20.49■□□□□ 0.87
PPP4R1-210ENST00000578557 PHF23Q9BUL5 403 aaPredicted RBP19.06■□□□□ 0.64
PPP4R1-210ENST00000578557 SENP3Q9H4L4 574 aaPredicted RBP18.96■□□□□ 0.63
PPP4R1-210ENST00000578557 CCDC180Q9P1Z9 1646 aa18.12■□□□□ 0.49
PPP4R1-210ENST00000578557 ABCC9O60706 1549 aa17.73■□□□□ 0.43
PPP4R1-210ENST00000578557 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
PPP4R1-210ENST00000578557 FOXD1Q16676 465 aa17.56■□□□□ 0.4
PPP4R1-210ENST00000578557 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.35
PPP4R1-210ENST00000578557 NACADO15069 1562 aa17.2■□□□□ 0.34
PPP4R1-210ENST00000578557 DCAF8L2P0C7V8 631 aa17.19■□□□□ 0.34
PPP4R1-210ENST00000578557 RB1CC1Q8TDY2 1594 aa17.17■□□□□ 0.34
PPP4R1-210ENST00000578557 DCAF1Q9Y4B6 1507 aa17.08■□□□□ 0.32
PPP4R1-210ENST00000578557 ZCCHC6Q5VYS8 1495 aaKnown RBP17.03■□□□□ 0.32
PPP4R1-210ENST00000578557 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
PPP4R1-210ENST00000578557 ADRA2BP18089 450 aa16.81■□□□□ 0.28
PPP4R1-210ENST00000578557 SHROOM4Q9ULL8 1493 aa16.66■□□□□ 0.26
PPP4R1-210ENST00000578557 PABPN1Q86U42 306 aaKnown RBP eCLIP16.64■□□□□ 0.25
PPP4R1-210ENST00000578557 PIAS4Q8N2W9 510 aaPredicted RBP16.56■□□□□ 0.24
PPP4R1-210ENST00000578557 BICRAQ9NZM4 1560 aa16.48■□□□□ 0.23
PPP4R1-210ENST00000578557 SCRIBQ14160 1630 aa16.41■□□□□ 0.22
PPP4R1-210ENST00000578557 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
PPP4R1-210ENST00000578557 DNAJC5BQ9UF47 199 aa16.32■□□□□ 0.2
PPP4R1-210ENST00000578557 MSH5O43196 834 aa16.26■□□□□ 0.19
PPP4R1-210ENST00000578557 EIF4G1Q04637 1599 aaKnown RBP16.13■□□□□ 0.17
PPP4R1-210ENST00000578557 CECR2Q9BXF3 1484 aa16.03■□□□□ 0.16
PPP4R1-210ENST00000578557 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
PPP4R1-210ENST00000578557 NCAPD3P42695 1498 aa15.93■□□□□ 0.14
PPP4R1-210ENST00000578557 BAZ1AQ9NRL2 1556 aaPredicted RBP15.92■□□□□ 0.14
PPP4R1-210ENST00000578557 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
PPP4R1-210ENST00000578557 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
PPP4R1-210ENST00000578557 SMARCA4P51532 1647 aa15.79■□□□□ 0.12
PPP4R1-210ENST00000578557 PEG3Q9GZU2 1588 aa15.75■□□□□ 0.11
PPP4R1-210ENST00000578557 HMGXB3Q12766 1538 aa15.75■□□□□ 0.11
PPP4R1-210ENST00000578557 BAZ1BQ9UIG0 1483 aaKnown RBP15.7■□□□□ 0.1
PPP4R1-210ENST00000578557 MROH2BQ7Z745 1585 aa15.69■□□□□ 0.1
PPP4R1-210ENST00000578557 RSF1Q96T23 1441 aaPredicted RBP15.63■□□□□ 0.09
PPP4R1-210ENST00000578557 PPP4R3CPQ6ZMV5 832 aa15.5■□□□□ 0.07
PPP4R1-210ENST00000578557 CADPSQ9ULU8 1353 aa15.49■□□□□ 0.07
PPP4R1-210ENST00000578557 PDS5BQ9NTI5 1447 aa15.46■□□□□ 0.07
PPP4R1-210ENST00000578557 SCAF1Q9H7N4 1312 aaKnown RBP15.44■□□□□ 0.06
PPP4R1-210ENST00000578557 LAMC3Q9Y6N6 1575 aa15.41■□□□□ 0.06
PPP4R1-210ENST00000578557 TOP2AP11388 1531 aaKnown RBP15.41■□□□□ 0.06
PPP4R1-210ENST00000578557 WIZO95785 1651 aa15.41■□□□□ 0.06
PPP4R1-210ENST00000578557 ERCC6Q03468 1493 aa15.4■□□□□ 0.06
PPP4R1-210ENST00000578557 CFTRP13569 1480 aa15.33■□□□□ 0.04
PPP4R1-210ENST00000578557 CUX2O14529 1486 aa15.32■□□□□ 0.04
PPP4R1-210ENST00000578557 NESP48681 1621 aa15.28■□□□□ 0.04
PPP4R1-210ENST00000578557 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
PPP4R1-210ENST00000578557 CCDC88BA6NC98 1476 aa15.26■□□□□ 0.03
PPP4R1-210ENST00000578557 SUPT5HO00267 1087 aaKnown RBP15.21■□□□□ 0.03
PPP4R1-210ENST00000578557 FANCD2Q9BXW9 1451 aa15.19■□□□□ 0.02
PPP4R1-210ENST00000578557 CEP164Q9UPV0 1460 aa15.17■□□□□ 0.02
PPP4R1-210ENST00000578557 MRC2Q9UBG0 1479 aa15.15■□□□□ 0.02
PPP4R1-210ENST00000578557 ABCC8Q09428 1581 aa15.12■□□□□ 0.01
PPP4R1-210ENST00000578557 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
PPP4R1-210ENST00000578557 NCBP3Q53F19 620 aaKnown RBP15.1■□□□□ 0.01
PPP4R1-210ENST00000578557 CNKSR2Q8WXI2 1034 aa15.1■□□□□ 0.01
PPP4R1-210ENST00000578557 KCNA4P22459 653 aa15.06■□□□□ 0
PPP4R1-210ENST00000578557 WDR62O43379 1518 aa15.05■□□□□ -0
PPP4R1-210ENST00000578557 THOC2Q8NI27 1593 aaKnown RBP15.02■□□□□ -0
PPP4R1-210ENST00000578557 KIF21AQ7Z4S6 1674 aa14.96□□□□□ -0.01
PPP4R1-210ENST00000578557 URB2Q14146 1524 aaKnown RBP14.94□□□□□ -0.02
PPP4R1-210ENST00000578557 IFT140Q96RY7 1462 aa14.93□□□□□ -0.02
PPP4R1-210ENST00000578557 DNAJC5Q9H3Z4 198 aa14.92□□□□□ -0.02
PPP4R1-210ENST00000578557 TOPBP1Q92547 1522 aa14.9□□□□□ -0.02
PPP4R1-210ENST00000578557 POTEDQ86YR6 584 aa14.88□□□□□ -0.03
PPP4R1-210ENST00000578557 DNMBPQ6XZF7 1577 aa14.87□□□□□ -0.03
PPP4R1-210ENST00000578557 PRDM2Q13029 1718 aa14.86□□□□□ -0.03
PPP4R1-210ENST00000578557 NPM3O75607 178 aaKnown RBP14.86□□□□□ -0.03
PPP4R1-210ENST00000578557 SOGA1O94964 1423 aa14.83□□□□□ -0.04
PPP4R1-210ENST00000578557 RNF216Q9NWF9 866 aaPredicted RBP14.82□□□□□ -0.04
PPP4R1-210ENST00000578557 OSCARQ8IYS5 282 aa14.8□□□□□ -0.04
PPP4R1-210ENST00000578557 HOXD11P31277 338 aaPredicted RBP14.78□□□□□ -0.04
PPP4R1-210ENST00000578557 POLA1P09884 1462 aaPredicted RBP14.77□□□□□ -0.04
PPP4R1-210ENST00000578557 WRNQ14191 1432 aaPredicted RBP eCLIP14.77□□□□□ -0.04
PPP4R1-210ENST00000578557 WDR97A6NE52 1622 aa14.74□□□□□ -0.05
PPP4R1-210ENST00000578557 CUX1P39880 1505 aa14.71□□□□□ -0.05
PPP4R1-210ENST00000578557 FGD5Q6ZNL6 1462 aa14.71□□□□□ -0.05
PPP4R1-210ENST00000578557 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
PPP4R1-210ENST00000578557 ZNF608Q9ULD9 1512 aaPredicted RBP14.67□□□□□ -0.06
PPP4R1-210ENST00000578557 ABCA10Q8WWZ4 1543 aa14.66□□□□□ -0.06
PPP4R1-210ENST00000578557 AQRO60306 1485 aaKnown RBP eCLIP14.66□□□□□ -0.062e-7■□□□□ 9
PPP4R1-210ENST00000578557 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
PPP4R1-210ENST00000578557 RAD54L2Q9Y4B4 1467 aa14.65□□□□□ -0.06
PPP4R1-210ENST00000578557 GRIN2BQ13224 1484 aa14.64□□□□□ -0.07
PPP4R1-210ENST00000578557 CHMP7Q8WUX9 453 aaPredicted RBP14.64□□□□□ -0.07
PPP4R1-210ENST00000578557 TOP2BQ02880 1626 aa14.63□□□□□ -0.07
PPP4R1-210ENST00000578557 GAPVD1Q14C86 1478 aa14.61□□□□□ -0.07
PPP4R1-210ENST00000578557 MAGI1Q96QZ7 1491 aaPredicted RBP14.61□□□□□ -0.07
PPP4R1-210ENST00000578557 FBLN2P98095 1184 aa14.58□□□□□ -0.08
PPP4R1-210ENST00000578557 BIVM-ERCC5R4GMW8 1640 aa14.55□□□□□ -0.08
PPP4R1-210ENST00000578557 EIF4G3O43432 1585 aaKnown RBP14.55□□□□□ -0.08
PPP4R1-210ENST00000578557 SYNJ2O15056 1496 aa14.53□□□□□ -0.08
PPP4R1-210ENST00000578557 KIF27Q86VH2 1401 aa14.53□□□□□ -0.08
PPP4R1-210ENST00000578557 TRIM41Q8WV44 630 aa14.51□□□□□ -0.09
PPP4R1-210ENST00000578557 FHAD1B1AJZ9 1412 aa14.5□□□□□ -0.09
PPP4R1-210ENST00000578557 SYNJ1O43426 1573 aa14.5□□□□□ -0.09
PPP4R1-210ENST00000578557 ERICH3Q5RHP9 1530 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms