RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 AEBP2Q6ZN18 517 aaPredicted RBP18.05■□□□□ 0.48
VPS53-209ENST00000570771 CHIC1Q5VXU3 224 aa16.85■□□□□ 0.29
VPS53-209ENST00000570771 SENP3Q9H4L4 574 aaPredicted RBP15.51■□□□□ 0.07
VPS53-209ENST00000570771 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
VPS53-209ENST00000570771 PHF23Q9BUL5 403 aaPredicted RBP15.17■□□□□ 0.02
VPS53-209ENST00000570771 POTEDQ86YR6 584 aa14.69□□□□□ -0.06
VPS53-209ENST00000570771 FOXD1Q16676 465 aa14.52□□□□□ -0.09
VPS53-209ENST00000570771 MSH5O43196 834 aa13.87□□□□□ -0.19
VPS53-209ENST00000570771 CCDC180Q9P1Z9 1646 aa13.59□□□□□ -0.23
VPS53-209ENST00000570771 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
VPS53-209ENST00000570771 ABCC9O60706 1549 aa13.25□□□□□ -0.29
VPS53-209ENST00000570771 PPP6R1Q9UPN7 881 aa13.03□□□□□ -0.32
VPS53-209ENST00000570771 ZCCHC6Q5VYS8 1495 aaKnown RBP12.96□□□□□ -0.34
VPS53-209ENST00000570771 ADRA2BP18089 450 aa12.93□□□□□ -0.34
VPS53-209ENST00000570771 PLPPR3Q6T4P5 718 aa12.84□□□□□ -0.35
VPS53-209ENST00000570771 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
VPS53-209ENST00000570771 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
VPS53-209ENST00000570771 NACADO15069 1562 aa12.73□□□□□ -0.37
VPS53-209ENST00000570771 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
VPS53-209ENST00000570771 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
VPS53-209ENST00000570771 SCRIBQ14160 1630 aa12.53□□□□□ -0.4
VPS53-209ENST00000570771 UNC13AQ9UPW8 1703 aa12.5□□□□□ -0.41
VPS53-209ENST00000570771 BICRAQ9NZM4 1560 aa12.47□□□□□ -0.41
VPS53-209ENST00000570771 PABPN1Q86U42 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS53-209ENST00000570771 SHROOM4Q9ULL8 1493 aa12.4□□□□□ -0.43
VPS53-209ENST00000570771 CACNB1Q02641 598 aaPredicted RBP12.27□□□□□ -0.45
VPS53-209ENST00000570771 DMRT2Q9Y5R5 561 aa12.2□□□□□ -0.46
VPS53-209ENST00000570771 CECR2Q9BXF3 1484 aa12.13□□□□□ -0.47
VPS53-209ENST00000570771 DNAJC5BQ9UF47 199 aa12.1□□□□□ -0.47
VPS53-209ENST00000570771 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
VPS53-209ENST00000570771 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
VPS53-209ENST00000570771 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
VPS53-209ENST00000570771 SMARCA4P51532 1647 aa11.97□□□□□ -0.49
VPS53-209ENST00000570771 CC2D2AQ9P2K1 1620 aa11.96□□□□□ -0.5
VPS53-209ENST00000570771 BAZ1AQ9NRL2 1556 aaPredicted RBP11.91□□□□□ -0.5
VPS53-209ENST00000570771 RSF1Q96T23 1441 aaPredicted RBP11.88□□□□□ -0.51
VPS53-209ENST00000570771 ATAD2BQ9ULI0 1458 aa11.87□□□□□ -0.51
VPS53-209ENST00000570771 SCAF1Q9H7N4 1312 aaKnown RBP11.85□□□□□ -0.51
VPS53-209ENST00000570771 WIZO95785 1651 aa11.84□□□□□ -0.51
VPS53-209ENST00000570771 PEG3Q9GZU2 1588 aa11.83□□□□□ -0.52
VPS53-209ENST00000570771 NCAPD3P42695 1498 aa11.79□□□□□ -0.52
VPS53-209ENST00000570771 RNF39Q9H2S5 420 aa11.78□□□□□ -0.52
VPS53-209ENST00000570771 SMARCA2P51531 1590 aa11.76□□□□□ -0.53
VPS53-209ENST00000570771 HMGXB3Q12766 1538 aa11.75□□□□□ -0.53
VPS53-209ENST00000570771 BAZ1BQ9UIG0 1483 aaKnown RBP11.73□□□□□ -0.53
VPS53-209ENST00000570771 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
VPS53-209ENST00000570771 SUPT5HO00267 1087 aaKnown RBP11.65□□□□□ -0.54
VPS53-209ENST00000570771 DCAF8L1A6NGE4 600 aa11.64□□□□□ -0.55
VPS53-209ENST00000570771 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
VPS53-209ENST00000570771 NESP48681 1621 aa11.57□□□□□ -0.56
VPS53-209ENST00000570771 C1QBPQ07021 282 aaKnown RBP11.56□□□□□ -0.56
VPS53-209ENST00000570771 HOXD11P31277 338 aaPredicted RBP11.49□□□□□ -0.57
VPS53-209ENST00000570771 CFTRP13569 1480 aa11.44□□□□□ -0.58
VPS53-209ENST00000570771 CADPSQ9ULU8 1353 aa11.44□□□□□ -0.58
VPS53-209ENST00000570771 LAMC3Q9Y6N6 1575 aa11.41□□□□□ -0.58
VPS53-209ENST00000570771 POTEHQ6S545 545 aa11.37□□□□□ -0.59
VPS53-209ENST00000570771 KIF21AQ7Z4S6 1674 aa11.36□□□□□ -0.59
VPS53-209ENST00000570771 FANCD2Q9BXW9 1451 aa11.34□□□□□ -0.59
VPS53-209ENST00000570771 THOC2Q8NI27 1593 aaKnown RBP11.33□□□□□ -0.6
VPS53-209ENST00000570771 ERCC6Q03468 1493 aa11.3□□□□□ -0.6
VPS53-209ENST00000570771 URB2Q14146 1524 aaKnown RBP11.3□□□□□ -0.6
VPS53-209ENST00000570771 PDS5BQ9NTI5 1447 aa11.28□□□□□ -0.6
VPS53-209ENST00000570771 PRDM2Q13029 1718 aa11.28□□□□□ -0.6
VPS53-209ENST00000570771 CEP164Q9UPV0 1460 aa11.27□□□□□ -0.6
VPS53-209ENST00000570771 ABCC8Q09428 1581 aa11.25□□□□□ -0.61
VPS53-209ENST00000570771 MRC2Q9UBG0 1479 aa11.25□□□□□ -0.61
VPS53-209ENST00000570771 WDR62O43379 1518 aa11.23□□□□□ -0.61
VPS53-209ENST00000570771 CUX1P39880 1505 aa11.23□□□□□ -0.61
VPS53-209ENST00000570771 RNF216Q9NWF9 866 aaPredicted RBP11.21□□□□□ -0.61
VPS53-209ENST00000570771 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
VPS53-209ENST00000570771 TOPBP1Q92547 1522 aa11.2□□□□□ -0.62
VPS53-209ENST00000570771 CUX2O14529 1486 aa11.18□□□□□ -0.62
VPS53-209ENST00000570771 DNMBPQ6XZF7 1577 aa11.16□□□□□ -0.62
VPS53-209ENST00000570771 PPP4R3CPQ6ZMV5 832 aa11.15□□□□□ -0.62
VPS53-209ENST00000570771 WRNQ14191 1432 aaPredicted RBP eCLIP11.14□□□□□ -0.63
VPS53-209ENST00000570771 POLA1P09884 1462 aaPredicted RBP11.13□□□□□ -0.63
VPS53-209ENST00000570771 FGD5Q6ZNL6 1462 aa11.12□□□□□ -0.63
VPS53-209ENST00000570771 RAD54L2Q9Y4B4 1467 aa11.12□□□□□ -0.63
VPS53-209ENST00000570771 CNKSR2Q8WXI2 1034 aa11.12□□□□□ -0.63
VPS53-209ENST00000570771 TOP2BQ02880 1626 aa11.1□□□□□ -0.63
VPS53-209ENST00000570771 BIVM-ERCC5R4GMW8 1640 aa11.1□□□□□ -0.63
VPS53-209ENST00000570771 ZNF608Q9ULD9 1512 aaPredicted RBP11.09□□□□□ -0.63
VPS53-209ENST00000570771 TARBP1Q13395 1621 aaKnown RBP11.09□□□□□ -0.63
VPS53-209ENST00000570771 WDR97A6NE52 1622 aa11.04□□□□□ -0.64
VPS53-209ENST00000570771 IFT140Q96RY7 1462 aa11.02□□□□□ -0.65
VPS53-209ENST00000570771 SOGA1O94964 1423 aa11.01□□□□□ -0.65
VPS53-209ENST00000570771 AQRO60306 1485 aaKnown RBP eCLIP11□□□□□ -0.655e-12■■■□□ 18.4
VPS53-209ENST00000570771 EIF4G3O43432 1585 aaKnown RBP11□□□□□ -0.65
VPS53-209ENST00000570771 TDRD9Q8NDG6 1382 aaKnown RBP11□□□□□ -0.65
VPS53-209ENST00000570771 ABCA10Q8WWZ4 1543 aa10.99□□□□□ -0.65
VPS53-209ENST00000570771 RUSC2Q8N2Y8 1516 aa10.99□□□□□ -0.65
VPS53-209ENST00000570771 ABCA5Q8WWZ7 1642 aa10.97□□□□□ -0.65
VPS53-209ENST00000570771 TRIM41Q8WV44 630 aa10.91□□□□□ -0.66
VPS53-209ENST00000570771 GAPVD1Q14C86 1478 aa10.9□□□□□ -0.66
VPS53-209ENST00000570771 SNAPC4Q5SXM2 1469 aa10.9□□□□□ -0.66
VPS53-209ENST00000570771 PBRM1Q86U86 1689 aa10.88□□□□□ -0.67
VPS53-209ENST00000570771 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS53-209ENST00000570771 GRIN2BQ13224 1484 aa10.87□□□□□ -0.67
VPS53-209ENST00000570771 IGF1RP08069 1367 aa10.86□□□□□ -0.67
VPS53-209ENST00000570771 ADAMTS12P58397 1594 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms