RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 NISCHQ9Y2I1 1504 aa21.09■□□□□ 0.97
VPS53-206ENST00000570359 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
VPS53-206ENST00000570359 DCAF8L2P0C7V8 631 aa18.05■□□□□ 0.48
VPS53-206ENST00000570359 CCDC180Q9P1Z9 1646 aa17.95■□□□□ 0.46
VPS53-206ENST00000570359 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
VPS53-206ENST00000570359 SUPT5HO00267 1087 aaKnown RBP17.66■□□□□ 0.42
VPS53-206ENST00000570359 ABCC9O60706 1549 aa17.23■□□□□ 0.35
VPS53-206ENST00000570359 DCAF1Q9Y4B6 1507 aa17.11■□□□□ 0.33
VPS53-206ENST00000570359 SCRIBQ14160 1630 aa17.06■□□□□ 0.32
VPS53-206ENST00000570359 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
VPS53-206ENST00000570359 NACADO15069 1562 aa16.71■□□□□ 0.27
VPS53-206ENST00000570359 MYO15BQ96JP2 1530 aa16.7■□□□□ 0.26
VPS53-206ENST00000570359 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
VPS53-206ENST00000570359 CECR2Q9BXF3 1484 aa16.6■□□□□ 0.25
VPS53-206ENST00000570359 RB1CC1Q8TDY2 1594 aa16.57■□□□□ 0.24
VPS53-206ENST00000570359 PABPN1Q86U42 306 aaKnown RBP eCLIP16.51■□□□□ 0.23
VPS53-206ENST00000570359 LOC105371045A0A1W2PR82 267 aa16.46■□□□□ 0.23
VPS53-206ENST00000570359 MROH2BQ7Z745 1585 aa16.46■□□□□ 0.23
VPS53-206ENST00000570359 EHMT2Q96KQ7 1210 aa16.45■□□□□ 0.22
VPS53-206ENST00000570359 FAM9AQ8IZU1 332 aaPredicted RBP16.41■□□□□ 0.22
VPS53-206ENST00000570359 WIZO95785 1651 aa16.39■□□□□ 0.21
VPS53-206ENST00000570359 TRIM41Q8WV44 630 aa16.35■□□□□ 0.21
VPS53-206ENST00000570359 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.21
VPS53-206ENST00000570359 BAZ1AQ9NRL2 1556 aaPredicted RBP16.22■□□□□ 0.19
VPS53-206ENST00000570359 PCGF6Q9BYE7 350 aa16.16■□□□□ 0.18
VPS53-206ENST00000570359 SMARCA4P51532 1647 aa16.14■□□□□ 0.17
VPS53-206ENST00000570359 BICRAQ9NZM4 1560 aa16.12■□□□□ 0.17
VPS53-206ENST00000570359 CCDC88BA6NC98 1476 aa16.02■□□□□ 0.15
VPS53-206ENST00000570359 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
VPS53-206ENST00000570359 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
VPS53-206ENST00000570359 SMARCA2P51531 1590 aa15.95■□□□□ 0.14
VPS53-206ENST00000570359 PPARGC1BQ86YN6 1023 aaKnown RBP15.92■□□□□ 0.14
VPS53-206ENST00000570359 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
VPS53-206ENST00000570359 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
VPS53-206ENST00000570359 ATAD2BQ9ULI0 1458 aa15.81■□□□□ 0.12
VPS53-206ENST00000570359 TTBK1Q5TCY1 1321 aaPredicted RBP15.81■□□□□ 0.12
VPS53-206ENST00000570359 HRCP23327 699 aa15.77■□□□□ 0.11
VPS53-206ENST00000570359 SOGA1O94964 1423 aa15.75■□□□□ 0.11
VPS53-206ENST00000570359 TRIM26Q12899 539 aaPredicted RBP15.74■□□□□ 0.11
VPS53-206ENST00000570359 RUSC2Q8N2Y8 1516 aa15.71■□□□□ 0.11
VPS53-206ENST00000570359 UBTFP17480 764 aaKnown RBP15.69■□□□□ 0.1
VPS53-206ENST00000570359 PEG3Q9GZU2 1588 aa15.69■□□□□ 0.1
VPS53-206ENST00000570359 RANGAP1P46060 587 aaPredicted RBP15.69■□□□□ 0.1
VPS53-206ENST00000570359 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
VPS53-206ENST00000570359 CSRNP3Q8WYN3 585 aa15.61■□□□□ 0.09
VPS53-206ENST00000570359 SYNJ1O43426 1573 aa15.59■□□□□ 0.09
VPS53-206ENST00000570359 CEP162Q5TB80 1403 aa15.51■□□□□ 0.07
VPS53-206ENST00000570359 NCAPD3P42695 1498 aa15.48■□□□□ 0.07
VPS53-206ENST00000570359 HMGXB3Q12766 1538 aa15.43■□□□□ 0.06
VPS53-206ENST00000570359 GOLGA3Q08378 1498 aa15.42■□□□□ 0.06
VPS53-206ENST00000570359 EEA1Q15075 1411 aa15.42■□□□□ 0.06
VPS53-206ENST00000570359 TNIKQ9UKE5 1360 aa15.41■□□□□ 0.06
VPS53-206ENST00000570359 CC2D2AQ9P2K1 1620 aa15.38■□□□□ 0.05
VPS53-206ENST00000570359 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.36■□□□□ 0.05
VPS53-206ENST00000570359 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
VPS53-206ENST00000570359 TOP2BQ02880 1626 aa15.34■□□□□ 0.05
VPS53-206ENST00000570359 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
VPS53-206ENST00000570359 CUX1P39880 1505 aa15.33■□□□□ 0.04
VPS53-206ENST00000570359 CFTRP13569 1480 aa15.31■□□□□ 0.04
VPS53-206ENST00000570359 CLIP1P30622 1438 aa15.29■□□□□ 0.04
VPS53-206ENST00000570359 DNAJC5BQ9UF47 199 aa15.28■□□□□ 0.04
VPS53-206ENST00000570359 CCER1Q8TC90 406 aaPredicted RBP15.27■□□□□ 0.04
VPS53-206ENST00000570359 CADPSQ9ULU8 1353 aa15.25■□□□□ 0.03
VPS53-206ENST00000570359 BIVM-ERCC5R4GMW8 1640 aa15.25■□□□□ 0.03
VPS53-206ENST00000570359 KIF21BO75037 1637 aa15.24■□□□□ 0.03
VPS53-206ENST00000570359 APLP2Q06481 763 aa15.24■□□□□ 0.03
VPS53-206ENST00000570359 NESP48681 1621 aa15.23■□□□□ 0.03
VPS53-206ENST00000570359 HNRNPUL2Q1KMD3 747 aaKnown RBP15.21■□□□□ 0.03
VPS53-206ENST00000570359 KIF27Q86VH2 1401 aa15.19■□□□□ 0.02
VPS53-206ENST00000570359 CUX2O14529 1486 aa15.19■□□□□ 0.02
VPS53-206ENST00000570359 ZEB1P37275 1124 aaPredicted RBP15.17■□□□□ 0.02
VPS53-206ENST00000570359 FANCD2Q9BXW9 1451 aa15.15■□□□□ 0.02
VPS53-206ENST00000570359 FGD5Q6ZNL6 1462 aa15.14■□□□□ 0.01
VPS53-206ENST00000570359 VPS8Q8N3P4 1428 aa15.12■□□□□ 0.01
VPS53-206ENST00000570359 P3H3Q8IVL6 736 aa15.11■□□□□ 0.01
VPS53-206ENST00000570359 PRXQ9BXM0 1461 aa15.11■□□□□ 0.01
VPS53-206ENST00000570359 PRDM2Q13029 1718 aa15.1■□□□□ 0.01
VPS53-206ENST00000570359 RAD54L2Q9Y4B4 1467 aa15.1■□□□□ 0.01
VPS53-206ENST00000570359 ATP1B4Q9UN42 357 aaPredicted RBP15.09■□□□□ 0.01
VPS53-206ENST00000570359 IGF1RP08069 1367 aa15.04■□□□□ -0
VPS53-206ENST00000570359 KANK4Q5T7N3 995 aaPredicted RBP15.03■□□□□ -0
VPS53-206ENST00000570359 ERICH3Q5RHP9 1530 aa15.03■□□□□ -0
VPS53-206ENST00000570359 ARAP1Q96P48 1450 aa15.02■□□□□ -0
VPS53-206ENST00000570359 CARMIL1Q5VZK9 1371 aa15.02■□□□□ -0
VPS53-206ENST00000570359 ITGAEP38570 1179 aa15.02□□□□□ -0.01
VPS53-206ENST00000570359 TOPBP1Q92547 1522 aa14.99□□□□□ -0.01
VPS53-206ENST00000570359 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
VPS53-206ENST00000570359 TDRD9Q8NDG6 1382 aaKnown RBP14.97□□□□□ -0.01
VPS53-206ENST00000570359 ARHGAP35Q9NRY4 1499 aa14.95□□□□□ -0.02
VPS53-206ENST00000570359 DNMBPQ6XZF7 1577 aa14.94□□□□□ -0.02
VPS53-206ENST00000570359 URB2Q14146 1524 aaKnown RBP14.93□□□□□ -0.02
VPS53-206ENST00000570359 PELP1Q8IZL8 1130 aaKnown RBP14.9□□□□□ -0.02
VPS53-206ENST00000570359 KIF21AQ7Z4S6 1674 aa14.88□□□□□ -0.03
VPS53-206ENST00000570359 LAMC3Q9Y6N6 1575 aa14.88□□□□□ -0.03
VPS53-206ENST00000570359 PDS5BQ9NTI5 1447 aa14.88□□□□□ -0.03
VPS53-206ENST00000570359 FHOD3Q2V2M9 1422 aa14.86□□□□□ -0.03
VPS53-206ENST00000570359 ABCA10Q8WWZ4 1543 aa14.85□□□□□ -0.03
VPS53-206ENST00000570359 ARID3CA6NKF2 412 aa14.81□□□□□ -0.04
VPS53-206ENST00000570359 FAM50AQ14320 339 aaKnown RBP14.8□□□□□ -0.04
VPS53-206ENST00000570359 GAPVD1Q14C86 1478 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms