RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 NISCHQ9Y2I1 1504 aa13.44□□□□□ -0.26
CLN3-223ENST00000566472 CCDC180Q9P1Z9 1646 aa11.61□□□□□ -0.55
CLN3-223ENST00000566472 ZCCHC6Q5VYS8 1495 aaKnown RBP11.39□□□□□ -0.59
CLN3-223ENST00000566472 DCAF1Q9Y4B6 1507 aa11.19□□□□□ -0.62
CLN3-223ENST00000566472 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
CLN3-223ENST00000566472 MYO15BQ96JP2 1530 aa10.95□□□□□ -0.66
CLN3-223ENST00000566472 DCAF8L2P0C7V8 631 aa10.85□□□□□ -0.67
CLN3-223ENST00000566472 SUPT5HO00267 1087 aaKnown RBP10.81□□□□□ -0.68
CLN3-223ENST00000566472 NACADO15069 1562 aa10.73□□□□□ -0.69
CLN3-223ENST00000566472 ABCC9O60706 1549 aa10.72□□□□□ -0.69
CLN3-223ENST00000566472 SCRIBQ14160 1630 aa10.65□□□□□ -0.7
CLN3-223ENST00000566472 CHIC1Q5VXU3 224 aa10.57□□□□□ -0.72
CLN3-223ENST00000566472 RB1CC1Q8TDY2 1594 aa10.55□□□□□ -0.72
CLN3-223ENST00000566472 RSF1Q96T23 1441 aaPredicted RBP10.54□□□□□ -0.72
CLN3-223ENST00000566472 CECR2Q9BXF3 1484 aa10.38□□□□□ -0.75
CLN3-223ENST00000566472 BAZ1AQ9NRL2 1556 aaPredicted RBP10.38□□□□□ -0.75
CLN3-223ENST00000566472 MROH2BQ7Z745 1585 aa10.37□□□□□ -0.75
CLN3-223ENST00000566472 WIZO95785 1651 aa10.27□□□□□ -0.77
CLN3-223ENST00000566472 SMARCA4P51532 1647 aa10.26□□□□□ -0.77
CLN3-223ENST00000566472 TOP2AP11388 1531 aaKnown RBP10.26□□□□□ -0.77
CLN3-223ENST00000566472 UNC13AQ9UPW8 1703 aa10.25□□□□□ -0.77
CLN3-223ENST00000566472 EIF4G1Q04637 1599 aaKnown RBP10.22□□□□□ -0.77
CLN3-223ENST00000566472 BICRAQ9NZM4 1560 aa10.2□□□□□ -0.78
CLN3-223ENST00000566472 TRIM41Q8WV44 630 aa10.19□□□□□ -0.78
CLN3-223ENST00000566472 PEG3Q9GZU2 1588 aa10.17□□□□□ -0.78
CLN3-223ENST00000566472 SMARCA2P51531 1590 aa10.14□□□□□ -0.79
CLN3-223ENST00000566472 CCDC88BA6NC98 1476 aa10.1□□□□□ -0.79
CLN3-223ENST00000566472 LOC105371045A0A1W2PR82 267 aa10.1□□□□□ -0.79
CLN3-223ENST00000566472 HRCP23327 699 aa10.04□□□□□ -0.8
CLN3-223ENST00000566472 PABPN1Q86U42 306 aaKnown RBP eCLIP10.02□□□□□ -0.81
CLN3-223ENST00000566472 ATAD2BQ9ULI0 1458 aa10.02□□□□□ -0.81
CLN3-223ENST00000566472 EEA1Q15075 1411 aa10.01□□□□□ -0.81
CLN3-223ENST00000566472 TRIM26Q12899 539 aaPredicted RBP9.99□□□□□ -0.81
CLN3-223ENST00000566472 PCGF6Q9BYE7 350 aa9.99□□□□□ -0.81
CLN3-223ENST00000566472 BAZ1BQ9UIG0 1483 aaKnown RBP9.98□□□□□ -0.81
CLN3-223ENST00000566472 ABCC8Q09428 1581 aa9.96□□□□□ -0.82
CLN3-223ENST00000566472 FAM9AQ8IZU1 332 aaPredicted RBP9.94□□□□□ -0.82
CLN3-223ENST00000566472 HMGXB3Q12766 1538 aa9.93□□□□□ -0.82
CLN3-223ENST00000566472 WRNQ14191 1432 aaPredicted RBP eCLIP9.91□□□□□ -0.82
CLN3-223ENST00000566472 NCAPD3P42695 1498 aa9.9□□□□□ -0.83
CLN3-223ENST00000566472 TNIKQ9UKE5 1360 aa9.88□□□□□ -0.83
CLN3-223ENST00000566472 SOGA1O94964 1423 aa9.85□□□□□ -0.83
CLN3-223ENST00000566472 GOLGA3Q08378 1498 aa9.85□□□□□ -0.83
CLN3-223ENST00000566472 SYNJ1O43426 1573 aa9.84□□□□□ -0.83
CLN3-223ENST00000566472 CSRNP3Q8WYN3 585 aa9.83□□□□□ -0.84
CLN3-223ENST00000566472 KIF21BO75037 1637 aa9.82□□□□□ -0.84
CLN3-223ENST00000566472 ZEB1P37275 1124 aaPredicted RBP9.82□□□□□ -0.84
CLN3-223ENST00000566472 CEP164Q9UPV0 1460 aa9.81□□□□□ -0.84
CLN3-223ENST00000566472 TOP2BQ02880 1626 aa9.81□□□□□ -0.84
CLN3-223ENST00000566472 CEP162Q5TB80 1403 aa9.81□□□□□ -0.84
CLN3-223ENST00000566472 BIVM-ERCC5R4GMW8 1640 aa9.8□□□□□ -0.84
CLN3-223ENST00000566472 RUSC2Q8N2Y8 1516 aa9.77□□□□□ -0.84
CLN3-223ENST00000566472 CFTRP13569 1480 aa9.76□□□□□ -0.85
CLN3-223ENST00000566472 EHMT2Q96KQ7 1210 aa9.73□□□□□ -0.85
CLN3-223ENST00000566472 ERICH3Q5RHP9 1530 aa9.72□□□□□ -0.85
CLN3-223ENST00000566472 PRDM2Q13029 1718 aa9.7□□□□□ -0.86
CLN3-223ENST00000566472 UBTFP17480 764 aaKnown RBP9.69□□□□□ -0.86
CLN3-223ENST00000566472 CUX1P39880 1505 aa9.68□□□□□ -0.86
CLN3-223ENST00000566472 PRXQ9BXM0 1461 aa9.67□□□□□ -0.86
CLN3-223ENST00000566472 CLIP1P30622 1438 aa9.67□□□□□ -0.86
CLN3-223ENST00000566472 RAPGEF2Q9Y4G8 1499 aa9.66□□□□□ -0.86
CLN3-223ENST00000566472 KIF27Q86VH2 1401 aa9.65□□□□□ -0.86
CLN3-223ENST00000566472 VPS8Q8N3P4 1428 aa9.65□□□□□ -0.86
CLN3-223ENST00000566472 CADPSQ9ULU8 1353 aa9.65□□□□□ -0.86
CLN3-223ENST00000566472 PPARGC1BQ86YN6 1023 aaKnown RBP9.65□□□□□ -0.86
CLN3-223ENST00000566472 CC2D2AQ9P2K1 1620 aa9.62□□□□□ -0.87
CLN3-223ENST00000566472 DNMBPQ6XZF7 1577 aa9.54□□□□□ -0.88
CLN3-223ENST00000566472 CUX2O14529 1486 aa9.53□□□□□ -0.88
CLN3-223ENST00000566472 FGD5Q6ZNL6 1462 aa9.53□□□□□ -0.88
CLN3-223ENST00000566472 ARAP1Q96P48 1450 aa9.53□□□□□ -0.88
CLN3-223ENST00000566472 FANCD2Q9BXW9 1451 aa9.53□□□□□ -0.88
CLN3-223ENST00000566472 APLP2Q06481 763 aa9.52□□□□□ -0.89
CLN3-223ENST00000566472 LAMC3Q9Y6N6 1575 aa9.51□□□□□ -0.89
CLN3-223ENST00000566472 CCER1Q8TC90 406 aaPredicted RBP9.51□□□□□ -0.89
CLN3-223ENST00000566472 IGF1RP08069 1367 aa9.5□□□□□ -0.89
CLN3-223ENST00000566472 ABCA10Q8WWZ4 1543 aa9.49□□□□□ -0.89
CLN3-223ENST00000566472 ARHGAP35Q9NRY4 1499 aa9.47□□□□□ -0.89
CLN3-223ENST00000566472 MAP3K1Q13233 1512 aa9.47□□□□□ -0.89
CLN3-223ENST00000566472 TOPBP1Q92547 1522 aa9.47□□□□□ -0.89
CLN3-223ENST00000566472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.47□□□□□ -0.89
CLN3-223ENST00000566472 CARMIL1Q5VZK9 1371 aa9.47□□□□□ -0.89
CLN3-223ENST00000566472 POLA1P09884 1462 aaPredicted RBP9.45□□□□□ -0.9
CLN3-223ENST00000566472 CUL7Q14999 1698 aa9.45□□□□□ -0.9
CLN3-223ENST00000566472 PDS5BQ9NTI5 1447 aa9.42□□□□□ -0.9
CLN3-223ENST00000566472 RRBP1Q9P2E9 1410 aaKnown RBP9.42□□□□□ -0.9
CLN3-223ENST00000566472 TTBK1Q5TCY1 1321 aaPredicted RBP9.42□□□□□ -0.9
CLN3-223ENST00000566472 WDR97A6NE52 1622 aa9.42□□□□□ -0.9
CLN3-223ENST00000566472 EFCAB5A4FU69 1503 aa9.41□□□□□ -0.9
CLN3-223ENST00000566472 FHAD1B1AJZ9 1412 aa9.41□□□□□ -0.9
CLN3-223ENST00000566472 NESP48681 1621 aa9.4□□□□□ -0.9
CLN3-223ENST00000566472 CLSPNQ9HAW4 1339 aa9.39□□□□□ -0.91
CLN3-223ENST00000566472 URB2Q14146 1524 aaKnown RBP9.39□□□□□ -0.91
CLN3-223ENST00000566472 TIAM1Q13009 1591 aa9.38□□□□□ -0.91
CLN3-223ENST00000566472 AQRO60306 1485 aaKnown RBP eCLIP9.38□□□□□ -0.91
CLN3-223ENST00000566472 RAD54L2Q9Y4B4 1467 aa9.38□□□□□ -0.91
CLN3-223ENST00000566472 ABCA5Q8WWZ7 1642 aa9.38□□□□□ -0.91
CLN3-223ENST00000566472 RANGAP1P46060 587 aaPredicted RBP9.36□□□□□ -0.91
CLN3-223ENST00000566472 CFAP43Q8NDM7 1665 aa9.36□□□□□ -0.91
CLN3-223ENST00000566472 CCNB3Q8WWL7 1395 aa9.35□□□□□ -0.91
CLN3-223ENST00000566472 FYCO1Q9BQS8 1478 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms