RNA–Protein interactions for RNA: ENST00000561557.1

LINC00566-201, long intergenic non-protein coding RNA 566, humanhuman

TSL 1 (best) BASIC

Gene LINC00566, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00566-201ENST00000561557 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
LINC00566-201ENST00000561557 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
LINC00566-201ENST00000561557 SENP3Q9H4L4 574 aaPredicted RBP24.32■■□□□ 1.48
LINC00566-201ENST00000561557 PHF23Q9BUL5 403 aaPredicted RBP23.87■■□□□ 1.41
LINC00566-201ENST00000561557 NISCHQ9Y2I1 1504 aa23.05■■□□□ 1.28
LINC00566-201ENST00000561557 FOXD1Q16676 465 aa22.78■■□□□ 1.24
LINC00566-201ENST00000561557 POTEDQ86YR6 584 aa22.78■■□□□ 1.24
LINC00566-201ENST00000561557 MSH5O43196 834 aa21.69■■□□□ 1.06
LINC00566-201ENST00000561557 PIAS4Q8N2W9 510 aaPredicted RBP21.09■□□□□ 0.97
LINC00566-201ENST00000561557 PPP6R1Q9UPN7 881 aa20.58■□□□□ 0.89
LINC00566-201ENST00000561557 ADRA2BP18089 450 aa20.47■□□□□ 0.87
LINC00566-201ENST00000561557 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.87
LINC00566-201ENST00000561557 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
LINC00566-201ENST00000561557 ABCC9O60706 1549 aa19.89■□□□□ 0.77
LINC00566-201ENST00000561557 NACADO15069 1562 aa19.25■□□□□ 0.67
LINC00566-201ENST00000561557 RB1CC1Q8TDY2 1594 aa19.23■□□□□ 0.67
LINC00566-201ENST00000561557 DCAF8L2P0C7V8 631 aa19.22■□□□□ 0.67
LINC00566-201ENST00000561557 CACNB1Q02641 598 aaPredicted RBP19.2■□□□□ 0.66
LINC00566-201ENST00000561557 ZCCHC6Q5VYS8 1495 aaKnown RBP19.2■□□□□ 0.66
LINC00566-201ENST00000561557 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
LINC00566-201ENST00000561557 DMRT2Q9Y5R5 561 aa19.13■□□□□ 0.65
LINC00566-201ENST00000561557 DCAF1Q9Y4B6 1507 aa19.13■□□□□ 0.65
LINC00566-201ENST00000561557 MAPK8IP2Q13387 824 aaPredicted RBP19.09■□□□□ 0.65
LINC00566-201ENST00000561557 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
LINC00566-201ENST00000561557 UNC13AQ9UPW8 1703 aa18.71■□□□□ 0.59
LINC00566-201ENST00000561557 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
LINC00566-201ENST00000561557 SCRIBQ14160 1630 aa18.6■□□□□ 0.57
LINC00566-201ENST00000561557 BICRAQ9NZM4 1560 aa18.59■□□□□ 0.57
LINC00566-201ENST00000561557 SHROOM4Q9ULL8 1493 aa18.51■□□□□ 0.55
LINC00566-201ENST00000561557 DCAF8L1A6NGE4 600 aa18.45■□□□□ 0.54
LINC00566-201ENST00000561557 RNF39Q9H2S5 420 aa18.41■□□□□ 0.54
LINC00566-201ENST00000561557 DNAJC5BQ9UF47 199 aa18.19■□□□□ 0.5
LINC00566-201ENST00000561557 EIF4G1Q04637 1599 aaKnown RBP18.11■□□□□ 0.49
LINC00566-201ENST00000561557 C1QBPQ07021 282 aaKnown RBP18.09■□□□□ 0.49
LINC00566-201ENST00000561557 HOXD11P31277 338 aaPredicted RBP18.05■□□□□ 0.48
LINC00566-201ENST00000561557 CC2D2AQ9P2K1 1620 aa18.01■□□□□ 0.47
LINC00566-201ENST00000561557 CECR2Q9BXF3 1484 aa17.9■□□□□ 0.46
LINC00566-201ENST00000561557 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
LINC00566-201ENST00000561557 SMARCA4P51532 1647 aa17.84■□□□□ 0.45
LINC00566-201ENST00000561557 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
LINC00566-201ENST00000561557 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
LINC00566-201ENST00000561557 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
LINC00566-201ENST00000561557 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
LINC00566-201ENST00000561557 PPP4R3CPQ6ZMV5 832 aa17.71■□□□□ 0.43
LINC00566-201ENST00000561557 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
LINC00566-201ENST00000561557 POTEHQ6S545 545 aa17.67■□□□□ 0.42
LINC00566-201ENST00000561557 RNF216Q9NWF9 866 aaPredicted RBP17.67■□□□□ 0.42
LINC00566-201ENST00000561557 HMGXB3Q12766 1538 aa17.66■□□□□ 0.42
LINC00566-201ENST00000561557 BAZ1BQ9UIG0 1483 aaKnown RBP17.6■□□□□ 0.41
LINC00566-201ENST00000561557 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
LINC00566-201ENST00000561557 CNKSR2Q8WXI2 1034 aa17.59■□□□□ 0.41
LINC00566-201ENST00000561557 WIZO95785 1651 aa17.52■□□□□ 0.4
LINC00566-201ENST00000561557 TOP2AP11388 1531 aaKnown RBP17.38■□□□□ 0.37
LINC00566-201ENST00000561557 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
LINC00566-201ENST00000561557 CADPSQ9ULU8 1353 aa17.26■□□□□ 0.35
LINC00566-201ENST00000561557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.23■□□□□ 0.35
LINC00566-201ENST00000561557 NESP48681 1621 aa17.22■□□□□ 0.35
LINC00566-201ENST00000561557 SUPT5HO00267 1087 aaKnown RBP17.19■□□□□ 0.34
LINC00566-201ENST00000561557 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
LINC00566-201ENST00000561557 PDS5BQ9NTI5 1447 aa17.18■□□□□ 0.34
LINC00566-201ENST00000561557 ERCC6Q03468 1493 aa17.17■□□□□ 0.34
LINC00566-201ENST00000561557 CFTRP13569 1480 aa17.15■□□□□ 0.34
LINC00566-201ENST00000561557 FANCD2Q9BXW9 1451 aa17.01■□□□□ 0.31
LINC00566-201ENST00000561557 KIF21AQ7Z4S6 1674 aa17.01■□□□□ 0.31
LINC00566-201ENST00000561557 CUX2O14529 1486 aa17■□□□□ 0.31
LINC00566-201ENST00000561557 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
LINC00566-201ENST00000561557 PRDM2Q13029 1718 aa16.99■□□□□ 0.31
LINC00566-201ENST00000561557 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
LINC00566-201ENST00000561557 MRC2Q9UBG0 1479 aa16.95■□□□□ 0.3
LINC00566-201ENST00000561557 DSG3P32926 999 aa16.94■□□□□ 0.3
LINC00566-201ENST00000561557 WDR62O43379 1518 aa16.87■□□□□ 0.29
LINC00566-201ENST00000561557 CAPN15O75808 1086 aa16.83■□□□□ 0.28
LINC00566-201ENST00000561557 ABCC8Q09428 1581 aa16.83■□□□□ 0.28
LINC00566-201ENST00000561557 URB2Q14146 1524 aaKnown RBP16.81■□□□□ 0.28
LINC00566-201ENST00000561557 SPINK5Q9NQ38 1064 aaPredicted RBP16.8■□□□□ 0.28
LINC00566-201ENST00000561557 U3KPZ7 1027 aaPredicted RBP16.75■□□□□ 0.27
LINC00566-201ENST00000561557 TOPBP1Q92547 1522 aa16.75■□□□□ 0.27
LINC00566-201ENST00000561557 NCBP3Q53F19 620 aaKnown RBP16.74■□□□□ 0.27
LINC00566-201ENST00000561557 DNMBPQ6XZF7 1577 aa16.73■□□□□ 0.27
LINC00566-201ENST00000561557 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
LINC00566-201ENST00000561557 CUX1P39880 1505 aa16.63■□□□□ 0.25
LINC00566-201ENST00000561557 POLA1P09884 1462 aaPredicted RBP16.61■□□□□ 0.25
LINC00566-201ENST00000561557 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
LINC00566-201ENST00000561557 SOGA1O94964 1423 aa16.57■□□□□ 0.24
LINC00566-201ENST00000561557 FGD5Q6ZNL6 1462 aa16.56■□□□□ 0.24
LINC00566-201ENST00000561557 TARBP1Q13395 1621 aaKnown RBP16.54■□□□□ 0.24
LINC00566-201ENST00000561557 TOP2BQ02880 1626 aa16.53■□□□□ 0.24
LINC00566-201ENST00000561557 BIVM-ERCC5R4GMW8 1640 aa16.52■□□□□ 0.23
LINC00566-201ENST00000561557 RAD54L2Q9Y4B4 1467 aa16.51■□□□□ 0.23
LINC00566-201ENST00000561557 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
LINC00566-201ENST00000561557 NPM3O75607 178 aaKnown RBP16.5■□□□□ 0.23
LINC00566-201ENST00000561557 WDR97A6NE52 1622 aa16.48■□□□□ 0.23
LINC00566-201ENST00000561557 SYNJ1O43426 1573 aa16.48■□□□□ 0.23
LINC00566-201ENST00000561557 ABCA10Q8WWZ4 1543 aa16.45■□□□□ 0.22
LINC00566-201ENST00000561557 AQRO60306 1485 aaKnown RBP eCLIP16.44■□□□□ 0.22
LINC00566-201ENST00000561557 TDRD9Q8NDG6 1382 aaKnown RBP16.44■□□□□ 0.22
LINC00566-201ENST00000561557 EIF4G3O43432 1585 aaKnown RBP16.43■□□□□ 0.22
LINC00566-201ENST00000561557 DNAJC5Q9H3Z4 198 aa16.39■□□□□ 0.21
LINC00566-201ENST00000561557 GRIN2BQ13224 1484 aa16.37■□□□□ 0.21
LINC00566-201ENST00000561557 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms