RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 AEBP2Q6ZN18 517 aaPredicted RBP33.18■■■□□ 2.9
TPM1-216ENST00000558910 CHIC1Q5VXU3 224 aa31.89■■■□□ 2.7
TPM1-216ENST00000558910 NISCHQ9Y2I1 1504 aa29.12■■■□□ 2.25
TPM1-216ENST00000558910 SENP3Q9H4L4 574 aaPredicted RBP28.15■■■□□ 2.1
TPM1-216ENST00000558910 PHF23Q9BUL5 403 aaPredicted RBP28.04■■■□□ 2.08
TPM1-216ENST00000558910 FOXD1Q16676 465 aa26.25■■□□□ 1.79
TPM1-216ENST00000558910 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
TPM1-216ENST00000558910 ABCC9O60706 1549 aa25.75■■□□□ 1.71
TPM1-216ENST00000558910 PLPPR3Q6T4P5 718 aa25.66■■□□□ 1.7
TPM1-216ENST00000558910 PPP6R1Q9UPN7 881 aa24.91■■□□□ 1.58
TPM1-216ENST00000558910 ADRA2BP18089 450 aa24.85■■□□□ 1.57
TPM1-216ENST00000558910 DCAF8L2P0C7V8 631 aa24.81■■□□□ 1.56
TPM1-216ENST00000558910 PIAS4Q8N2W9 510 aaPredicted RBP24.63■■□□□ 1.53
TPM1-216ENST00000558910 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
TPM1-216ENST00000558910 NACADO15069 1562 aa24.37■■□□□ 1.49
TPM1-216ENST00000558910 MSH5O43196 834 aa24.32■■□□□ 1.48
TPM1-216ENST00000558910 ZCCHC6Q5VYS8 1495 aaKnown RBP24.19■■□□□ 1.46
TPM1-216ENST00000558910 PABPN1Q86U42 306 aaKnown RBP eCLIP24.15■■□□□ 1.46
TPM1-216ENST00000558910 MYO15BQ96JP2 1530 aa24.03■■□□□ 1.44
TPM1-216ENST00000558910 UNC13AQ9UPW8 1703 aa23.93■■□□□ 1.42
TPM1-216ENST00000558910 DCAF1Q9Y4B6 1507 aa23.91■■□□□ 1.42
TPM1-216ENST00000558910 SCRIBQ14160 1630 aa23.82■■□□□ 1.4
TPM1-216ENST00000558910 DNAJC5BQ9UF47 199 aa23.81■■□□□ 1.4
TPM1-216ENST00000558910 BICRAQ9NZM4 1560 aa23.77■■□□□ 1.4
TPM1-216ENST00000558910 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
TPM1-216ENST00000558910 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
TPM1-216ENST00000558910 CC2D2AQ9P2K1 1620 aa23.16■■□□□ 1.3
TPM1-216ENST00000558910 CECR2Q9BXF3 1484 aa23.08■■□□□ 1.29
TPM1-216ENST00000558910 POTEDQ86YR6 584 aa23.06■■□□□ 1.28
TPM1-216ENST00000558910 MAPK8IP2Q13387 824 aaPredicted RBP22.71■■□□□ 1.23
TPM1-216ENST00000558910 SMARCA4P51532 1647 aa22.64■■□□□ 1.21
TPM1-216ENST00000558910 SCAF1Q9H7N4 1312 aaKnown RBP22.63■■□□□ 1.21
TPM1-216ENST00000558910 PPP4R3CPQ6ZMV5 832 aa22.59■■□□□ 1.21
TPM1-216ENST00000558910 ATAD2BQ9ULI0 1458 aa22.58■■□□□ 1.2
TPM1-216ENST00000558910 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
TPM1-216ENST00000558910 MROH2BQ7Z745 1585 aa22.51■■□□□ 1.19
TPM1-216ENST00000558910 NCAPD3P42695 1498 aa22.51■■□□□ 1.19
TPM1-216ENST00000558910 DNAJC5Q9H3Z4 198 aa22.49■■□□□ 1.19
TPM1-216ENST00000558910 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
TPM1-216ENST00000558910 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
TPM1-216ENST00000558910 DMRT2Q9Y5R5 561 aa22.41■■□□□ 1.18
TPM1-216ENST00000558910 HMGXB3Q12766 1538 aa22.36■■□□□ 1.17
TPM1-216ENST00000558910 WIZO95785 1651 aa22.28■■□□□ 1.16
TPM1-216ENST00000558910 PEG3Q9GZU2 1588 aa22.28■■□□□ 1.16
TPM1-216ENST00000558910 NESP48681 1621 aa22.22■■□□□ 1.15
TPM1-216ENST00000558910 ERCC6Q03468 1493 aa22.2■■□□□ 1.14
TPM1-216ENST00000558910 RSF1Q96T23 1441 aaPredicted RBP22.18■■□□□ 1.14
TPM1-216ENST00000558910 CNKSR2Q8WXI2 1034 aa22.03■■□□□ 1.12
TPM1-216ENST00000558910 TOP2AP11388 1531 aaKnown RBP21.95■■□□□ 1.1
TPM1-216ENST00000558910 LAMC3Q9Y6N6 1575 aa21.94■■□□□ 1.1
TPM1-216ENST00000558910 CADPSQ9ULU8 1353 aa21.93■■□□□ 1.1
TPM1-216ENST00000558910 PDS5BQ9NTI5 1447 aa21.89■■□□□ 1.09
TPM1-216ENST00000558910 KIF21AQ7Z4S6 1674 aa21.85■■□□□ 1.09
TPM1-216ENST00000558910 CUX2O14529 1486 aa21.83■■□□□ 1.09
TPM1-216ENST00000558910 SUPT5HO00267 1087 aaKnown RBP21.79■■□□□ 1.08
TPM1-216ENST00000558910 NCBP3Q53F19 620 aaKnown RBP21.79■■□□□ 1.08
TPM1-216ENST00000558910 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.07
TPM1-216ENST00000558910 HOXD11P31277 338 aaPredicted RBP21.76■■□□□ 1.07
TPM1-216ENST00000558910 THOC2Q8NI27 1593 aaKnown RBP21.76■■□□□ 1.07
TPM1-216ENST00000558910 CFTRP13569 1480 aa21.71■■□□□ 1.07
TPM1-216ENST00000558910 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
TPM1-216ENST00000558910 RNF216Q9NWF9 866 aaPredicted RBP21.71■■□□□ 1.07
TPM1-216ENST00000558910 CEP164Q9UPV0 1460 aa21.69■■□□□ 1.06
TPM1-216ENST00000558910 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
TPM1-216ENST00000558910 NPM3O75607 178 aaKnown RBP21.55■■□□□ 1.04
TPM1-216ENST00000558910 KCNA4P22459 653 aa21.55■■□□□ 1.04
TPM1-216ENST00000558910 WDR62O43379 1518 aa21.55■■□□□ 1.04
TPM1-216ENST00000558910 DCAF8L1A6NGE4 600 aa21.52■■□□□ 1.04
TPM1-216ENST00000558910 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
TPM1-216ENST00000558910 PRDM2Q13029 1718 aa21.44■■□□□ 1.02
TPM1-216ENST00000558910 TOPBP1Q92547 1522 aa21.32■■□□□ 1
TPM1-216ENST00000558910 DNMBPQ6XZF7 1577 aa21.24■□□□□ 0.99
TPM1-216ENST00000558910 ZNF608Q9ULD9 1512 aaPredicted RBP21.23■□□□□ 0.99
TPM1-216ENST00000558910 IFT140Q96RY7 1462 aa21.2■□□□□ 0.98
TPM1-216ENST00000558910 ABCC8Q09428 1581 aa21.2■□□□□ 0.98
TPM1-216ENST00000558910 RAD54L2Q9Y4B4 1467 aa21.15■□□□□ 0.98
TPM1-216ENST00000558910 POLA1P09884 1462 aaPredicted RBP21.13■□□□□ 0.97
TPM1-216ENST00000558910 CUX1P39880 1505 aa21.12■□□□□ 0.97
TPM1-216ENST00000558910 AQRO60306 1485 aaKnown RBP eCLIP21.12■□□□□ 0.97
TPM1-216ENST00000558910 FGD5Q6ZNL6 1462 aa21.1■□□□□ 0.97
TPM1-216ENST00000558910 SOGA1O94964 1423 aa21.1■□□□□ 0.97
TPM1-216ENST00000558910 TDRD9Q8NDG6 1382 aaKnown RBP21.07■□□□□ 0.96
TPM1-216ENST00000558910 TARBP1Q13395 1621 aaKnown RBP21.05■□□□□ 0.96
TPM1-216ENST00000558910 FBLN2P98095 1184 aa21.05■□□□□ 0.96
TPM1-216ENST00000558910 OSCARQ8IYS5 282 aa21.05■□□□□ 0.96
TPM1-216ENST00000558910 EIF4G3O43432 1585 aaKnown RBP21.05■□□□□ 0.96
TPM1-216ENST00000558910 TRIM41Q8WV44 630 aa21■□□□□ 0.95
TPM1-216ENST00000558910 WRNQ14191 1432 aaPredicted RBP eCLIP20.94■□□□□ 0.94
TPM1-216ENST00000558910 SYNJ1O43426 1573 aa20.89■□□□□ 0.94
TPM1-216ENST00000558910 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
TPM1-216ENST00000558910 CHMP7Q8WUX9 453 aaPredicted RBP20.85■□□□□ 0.93
TPM1-216ENST00000558910 CHD1O14646 1710 aa20.84■□□□□ 0.93
TPM1-216ENST00000558910 RNF39Q9H2S5 420 aa20.83■□□□□ 0.93
TPM1-216ENST00000558910 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
TPM1-216ENST00000558910 GAPVD1Q14C86 1478 aa20.82■□□□□ 0.92
TPM1-216ENST00000558910 GRIN2BQ13224 1484 aa20.81■□□□□ 0.92
TPM1-216ENST00000558910 ABCA10Q8WWZ4 1543 aa20.79■□□□□ 0.92
TPM1-216ENST00000558910 WDR97A6NE52 1622 aa20.79■□□□□ 0.92
TPM1-216ENST00000558910 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
TPM1-216ENST00000558910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms