RNA–Protein interactions for RNA: ENST00000558635.1

PSMA4-207, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-207ENST00000558635 AEBP2Q6ZN18 517 aaPredicted RBP27.91■■■□□ 2.06
PSMA4-207ENST00000558635 CHIC1Q5VXU3 224 aa26.8■■□□□ 1.88
PSMA4-207ENST00000558635 NISCHQ9Y2I1 1504 aa24.76■■□□□ 1.55
PSMA4-207ENST00000558635 SENP3Q9H4L4 574 aaPredicted RBP23.8■■□□□ 1.4
PSMA4-207ENST00000558635 PHF23Q9BUL5 403 aaPredicted RBP23.53■■□□□ 1.36
PSMA4-207ENST00000558635 FOXD1Q16676 465 aa22.14■■□□□ 1.13
PSMA4-207ENST00000558635 CCDC180Q9P1Z9 1646 aa21.84■■□□□ 1.09
PSMA4-207ENST00000558635 PLPPR3Q6T4P5 718 aa21.57■■□□□ 1.04
PSMA4-207ENST00000558635 ABCC9O60706 1549 aa21.26■□□□□ 0.99
PSMA4-207ENST00000558635 PPP6R1Q9UPN7 881 aa20.91■□□□□ 0.94
PSMA4-207ENST00000558635 ADRA2BP18089 450 aa20.87■□□□□ 0.93
PSMA4-207ENST00000558635 PIAS4Q8N2W9 510 aaPredicted RBP20.77■□□□□ 0.92
PSMA4-207ENST00000558635 DCAF8L2P0C7V8 631 aa20.68■□□□□ 0.9
PSMA4-207ENST00000558635 ZCCHC6Q5VYS8 1495 aaKnown RBP20.66■□□□□ 0.9
PSMA4-207ENST00000558635 MSH5O43196 834 aa20.63■□□□□ 0.89
PSMA4-207ENST00000558635 NACADO15069 1562 aa20.52■□□□□ 0.88
PSMA4-207ENST00000558635 RB1CC1Q8TDY2 1594 aa20.5■□□□□ 0.87
PSMA4-207ENST00000558635 MYO15BQ96JP2 1530 aa20.47■□□□□ 0.87
PSMA4-207ENST00000558635 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
PSMA4-207ENST00000558635 SCRIBQ14160 1630 aa20.02■□□□□ 0.79
PSMA4-207ENST00000558635 UNC13AQ9UPW8 1703 aa19.99■□□□□ 0.79
PSMA4-207ENST00000558635 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
PSMA4-207ENST00000558635 BICRAQ9NZM4 1560 aa19.88■□□□□ 0.77
PSMA4-207ENST00000558635 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
PSMA4-207ENST00000558635 POTEDQ86YR6 584 aa19.63■□□□□ 0.73
PSMA4-207ENST00000558635 DNAJC5BQ9UF47 199 aa19.36■□□□□ 0.69
PSMA4-207ENST00000558635 EIF4G1Q04637 1599 aaKnown RBP19.33■□□□□ 0.69
PSMA4-207ENST00000558635 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
PSMA4-207ENST00000558635 CC2D2AQ9P2K1 1620 aa19.2■□□□□ 0.66
PSMA4-207ENST00000558635 BAZ1AQ9NRL2 1556 aaPredicted RBP19.15■□□□□ 0.66
PSMA4-207ENST00000558635 SCAF1Q9H7N4 1312 aaKnown RBP19.15■□□□□ 0.66
PSMA4-207ENST00000558635 SMARCA4P51532 1647 aa19.14■□□□□ 0.66
PSMA4-207ENST00000558635 MROH2BQ7Z745 1585 aa19.1■□□□□ 0.65
PSMA4-207ENST00000558635 MAPK8IP2Q13387 824 aaPredicted RBP19.09■□□□□ 0.65
PSMA4-207ENST00000558635 ATAD2BQ9ULI0 1458 aa19.02■□□□□ 0.63
PSMA4-207ENST00000558635 RSF1Q96T23 1441 aaPredicted RBP18.98■□□□□ 0.63
PSMA4-207ENST00000558635 SMARCA2P51531 1590 aa18.98■□□□□ 0.63
PSMA4-207ENST00000558635 NCAPD3P42695 1498 aa18.97■□□□□ 0.63
PSMA4-207ENST00000558635 PEG3Q9GZU2 1588 aa18.94■□□□□ 0.62
PSMA4-207ENST00000558635 PPP4R3CPQ6ZMV5 832 aa18.94■□□□□ 0.62
PSMA4-207ENST00000558635 DMRT2Q9Y5R5 561 aa18.91■□□□□ 0.62
PSMA4-207ENST00000558635 WIZO95785 1651 aa18.88■□□□□ 0.61
PSMA4-207ENST00000558635 HMGXB3Q12766 1538 aa18.86■□□□□ 0.61
PSMA4-207ENST00000558635 BAZ1BQ9UIG0 1483 aaKnown RBP18.86■□□□□ 0.61
PSMA4-207ENST00000558635 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
PSMA4-207ENST00000558635 TOP2AP11388 1531 aaKnown RBP18.69■□□□□ 0.58
PSMA4-207ENST00000558635 CNKSR2Q8WXI2 1034 aa18.52■□□□□ 0.56
PSMA4-207ENST00000558635 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.55
PSMA4-207ENST00000558635 NESP48681 1621 aa18.46■□□□□ 0.55
PSMA4-207ENST00000558635 CADPSQ9ULU8 1353 aa18.44■□□□□ 0.54
PSMA4-207ENST00000558635 LAMC3Q9Y6N6 1575 aa18.4■□□□□ 0.54
PSMA4-207ENST00000558635 CFTRP13569 1480 aa18.36■□□□□ 0.53
PSMA4-207ENST00000558635 HOXD11P31277 338 aaPredicted RBP18.32■□□□□ 0.52
PSMA4-207ENST00000558635 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
PSMA4-207ENST00000558635 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
PSMA4-207ENST00000558635 ERCC6Q03468 1493 aa18.3■□□□□ 0.52
PSMA4-207ENST00000558635 RNF216Q9NWF9 866 aaPredicted RBP18.28■□□□□ 0.52
PSMA4-207ENST00000558635 FANCD2Q9BXW9 1451 aa18.22■□□□□ 0.51
PSMA4-207ENST00000558635 KIF21AQ7Z4S6 1674 aa18.19■□□□□ 0.5
PSMA4-207ENST00000558635 CEP164Q9UPV0 1460 aa18.16■□□□□ 0.5
PSMA4-207ENST00000558635 DCAF8L1A6NGE4 600 aa18.15■□□□□ 0.5
PSMA4-207ENST00000558635 PRDM2Q13029 1718 aa18.15■□□□□ 0.5
PSMA4-207ENST00000558635 MRC2Q9UBG0 1479 aa18.09■□□□□ 0.49
PSMA4-207ENST00000558635 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.49
PSMA4-207ENST00000558635 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
PSMA4-207ENST00000558635 NPM3O75607 178 aaKnown RBP18.02■□□□□ 0.48
PSMA4-207ENST00000558635 WDR62O43379 1518 aa18■□□□□ 0.47
PSMA4-207ENST00000558635 CUX2O14529 1486 aa18■□□□□ 0.47
PSMA4-207ENST00000558635 TOPBP1Q92547 1522 aa17.95■□□□□ 0.46
PSMA4-207ENST00000558635 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
PSMA4-207ENST00000558635 DNMBPQ6XZF7 1577 aa17.92■□□□□ 0.46
PSMA4-207ENST00000558635 KCNA4P22459 653 aa17.92■□□□□ 0.46
PSMA4-207ENST00000558635 CUX1P39880 1505 aa17.9■□□□□ 0.46
PSMA4-207ENST00000558635 WRNQ14191 1432 aaPredicted RBP eCLIP17.88■□□□□ 0.45
PSMA4-207ENST00000558635 POLA1P09884 1462 aaPredicted RBP17.82■□□□□ 0.44
PSMA4-207ENST00000558635 FGD5Q6ZNL6 1462 aa17.81■□□□□ 0.44
PSMA4-207ENST00000558635 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
PSMA4-207ENST00000558635 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
PSMA4-207ENST00000558635 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
PSMA4-207ENST00000558635 SOGA1O94964 1423 aa17.77■□□□□ 0.44
PSMA4-207ENST00000558635 BIVM-ERCC5R4GMW8 1640 aa17.76■□□□□ 0.43
PSMA4-207ENST00000558635 RAD54L2Q9Y4B4 1467 aa17.75■□□□□ 0.43
PSMA4-207ENST00000558635 TARBP1Q13395 1621 aaKnown RBP17.72■□□□□ 0.43
PSMA4-207ENST00000558635 ZNF608Q9ULD9 1512 aaPredicted RBP17.7■□□□□ 0.42
PSMA4-207ENST00000558635 TDRD9Q8NDG6 1382 aaKnown RBP17.66■□□□□ 0.42
PSMA4-207ENST00000558635 TRIM41Q8WV44 630 aa17.65■□□□□ 0.42
PSMA4-207ENST00000558635 AQRO60306 1485 aaKnown RBP eCLIP17.64■□□□□ 0.412e-7■■■■□ 26.1
PSMA4-207ENST00000558635 ABCA10Q8WWZ4 1543 aa17.63■□□□□ 0.41
PSMA4-207ENST00000558635 RNF39Q9H2S5 420 aa17.61■□□□□ 0.41
PSMA4-207ENST00000558635 EIF4G3O43432 1585 aaKnown RBP17.59■□□□□ 0.41
PSMA4-207ENST00000558635 WDR97A6NE52 1622 aa17.58■□□□□ 0.41
PSMA4-207ENST00000558635 GAPVD1Q14C86 1478 aa17.55■□□□□ 0.4
PSMA4-207ENST00000558635 CACNB1Q02641 598 aaPredicted RBP17.54■□□□□ 0.4
PSMA4-207ENST00000558635 GRIN2BQ13224 1484 aa17.51■□□□□ 0.39
PSMA4-207ENST00000558635 ABCA5Q8WWZ7 1642 aa17.51■□□□□ 0.39
PSMA4-207ENST00000558635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.49■□□□□ 0.39
PSMA4-207ENST00000558635 KIF27Q86VH2 1401 aa17.48■□□□□ 0.39
PSMA4-207ENST00000558635 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
PSMA4-207ENST00000558635 PBRM1Q86U86 1689 aa17.43■□□□□ 0.38
PSMA4-207ENST00000558635 MAGI1Q96QZ7 1491 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms