RNA–Protein interactions for RNA: ENST00000557829.1

CPNE6-204, Transcript of copine 6, humanhuman

TSL 2

Gene CPNE6, Length 2,192 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE6-204ENST00000557829 NISCHQ9Y2I1 1504 aa28.49■■■□□ 2.15
CPNE6-204ENST00000557829 CCDC180Q9P1Z9 1646 aa24.82■■□□□ 1.56
CPNE6-204ENST00000557829 ABCC9O60706 1549 aa24.17■■□□□ 1.46
CPNE6-204ENST00000557829 ZCCHC6Q5VYS8 1495 aaKnown RBP23.9■■□□□ 1.42
CPNE6-204ENST00000557829 DCAF8L2P0C7V8 631 aa23.64■■□□□ 1.37
CPNE6-204ENST00000557829 DCAF1Q9Y4B6 1507 aa23.5■■□□□ 1.35
CPNE6-204ENST00000557829 MYO15BQ96JP2 1530 aa23.27■■□□□ 1.32
CPNE6-204ENST00000557829 SHROOM4Q9ULL8 1493 aa23.22■■□□□ 1.31
CPNE6-204ENST00000557829 NACADO15069 1562 aa23.19■■□□□ 1.3
CPNE6-204ENST00000557829 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
CPNE6-204ENST00000557829 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
CPNE6-204ENST00000557829 UNC13AQ9UPW8 1703 aa22.8■■□□□ 1.24
CPNE6-204ENST00000557829 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
CPNE6-204ENST00000557829 BICRAQ9NZM4 1560 aa22.59■■□□□ 1.21
CPNE6-204ENST00000557829 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
CPNE6-204ENST00000557829 CECR2Q9BXF3 1484 aa22.21■■□□□ 1.15
CPNE6-204ENST00000557829 DNAJC5BQ9UF47 199 aa22.12■■□□□ 1.13
CPNE6-204ENST00000557829 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.12
CPNE6-204ENST00000557829 CHIC1Q5VXU3 224 aa22.06■■□□□ 1.12
CPNE6-204ENST00000557829 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
CPNE6-204ENST00000557829 BAZ1AQ9NRL2 1556 aaPredicted RBP21.98■■□□□ 1.11
CPNE6-204ENST00000557829 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
CPNE6-204ENST00000557829 SMARCA4P51532 1647 aa21.91■■□□□ 1.1
CPNE6-204ENST00000557829 CC2D2AQ9P2K1 1620 aa21.84■■□□□ 1.09
CPNE6-204ENST00000557829 WIZO95785 1651 aa21.82■■□□□ 1.08
CPNE6-204ENST00000557829 HRCP23327 699 aa21.72■■□□□ 1.07
CPNE6-204ENST00000557829 PEG3Q9GZU2 1588 aa21.63■■□□□ 1.05
CPNE6-204ENST00000557829 ATAD2BQ9ULI0 1458 aa21.63■■□□□ 1.05
CPNE6-204ENST00000557829 TOP2AP11388 1531 aaKnown RBP21.57■■□□□ 1.04
CPNE6-204ENST00000557829 SMARCA2P51531 1590 aa21.55■■□□□ 1.04
CPNE6-204ENST00000557829 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
CPNE6-204ENST00000557829 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
CPNE6-204ENST00000557829 PCGF6Q9BYE7 350 aa21.44■■□□□ 1.02
CPNE6-204ENST00000557829 CCDC88BA6NC98 1476 aa21.39■■□□□ 1.01
CPNE6-204ENST00000557829 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
CPNE6-204ENST00000557829 LOC105371045A0A1W2PR82 267 aa21.27■■□□□ 1
CPNE6-204ENST00000557829 TRIM26Q12899 539 aaPredicted RBP21.17■□□□□ 0.98
CPNE6-204ENST00000557829 TRIM41Q8WV44 630 aa21.02■□□□□ 0.95
CPNE6-204ENST00000557829 PPARGC1BQ86YN6 1023 aaKnown RBP21■□□□□ 0.95
CPNE6-204ENST00000557829 NESP48681 1621 aa20.99■□□□□ 0.95
CPNE6-204ENST00000557829 CFTRP13569 1480 aa20.93■□□□□ 0.94
CPNE6-204ENST00000557829 ZEB1P37275 1124 aaPredicted RBP20.92■□□□□ 0.94
CPNE6-204ENST00000557829 ABCC8Q09428 1581 aa20.91■□□□□ 0.94
CPNE6-204ENST00000557829 CADPSQ9ULU8 1353 aa20.9■□□□□ 0.94
CPNE6-204ENST00000557829 LAMC3Q9Y6N6 1575 aa20.81■□□□□ 0.92
CPNE6-204ENST00000557829 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
CPNE6-204ENST00000557829 ERCC6Q03468 1493 aa20.75■□□□□ 0.91
CPNE6-204ENST00000557829 KIF21AQ7Z4S6 1674 aa20.72■□□□□ 0.91
CPNE6-204ENST00000557829 PRDM2Q13029 1718 aa20.71■□□□□ 0.91
CPNE6-204ENST00000557829 SYNJ1O43426 1573 aa20.69■□□□□ 0.9
CPNE6-204ENST00000557829 FANCD2Q9BXW9 1451 aa20.67■□□□□ 0.9
CPNE6-204ENST00000557829 FAM9AQ8IZU1 332 aaPredicted RBP20.66■□□□□ 0.9
CPNE6-204ENST00000557829 PDS5BQ9NTI5 1447 aa20.64■□□□□ 0.9
CPNE6-204ENST00000557829 CUX1P39880 1505 aa20.61■□□□□ 0.89
CPNE6-204ENST00000557829 PELP1Q8IZL8 1130 aaKnown RBP20.59■□□□□ 0.89
CPNE6-204ENST00000557829 THOC2Q8NI27 1593 aaKnown RBP20.59■□□□□ 0.89
CPNE6-204ENST00000557829 TOP2BQ02880 1626 aa20.58■□□□□ 0.88
CPNE6-204ENST00000557829 BIVM-ERCC5R4GMW8 1640 aa20.54■□□□□ 0.88
CPNE6-204ENST00000557829 CEP164Q9UPV0 1460 aa20.54■□□□□ 0.88
CPNE6-204ENST00000557829 SOGA1O94964 1423 aa20.5■□□□□ 0.87
CPNE6-204ENST00000557829 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
CPNE6-204ENST00000557829 RUSC2Q8N2Y8 1516 aa20.44■□□□□ 0.86
CPNE6-204ENST00000557829 URB2Q14146 1524 aaKnown RBP20.44■□□□□ 0.86
CPNE6-204ENST00000557829 TOPBP1Q92547 1522 aa20.43■□□□□ 0.86
CPNE6-204ENST00000557829 DNMBPQ6XZF7 1577 aa20.42■□□□□ 0.86
CPNE6-204ENST00000557829 EHMT2Q96KQ7 1210 aa20.42■□□□□ 0.86
CPNE6-204ENST00000557829 WDR62O43379 1518 aa20.42■□□□□ 0.86
CPNE6-204ENST00000557829 CUX2O14529 1486 aa20.42■□□□□ 0.86
CPNE6-204ENST00000557829 FGD5Q6ZNL6 1462 aa20.4■□□□□ 0.86
CPNE6-204ENST00000557829 EEA1Q15075 1411 aa20.36■□□□□ 0.85
CPNE6-204ENST00000557829 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
CPNE6-204ENST00000557829 CSRNP3Q8WYN3 585 aa20.3■□□□□ 0.84
CPNE6-204ENST00000557829 RAD54L2Q9Y4B4 1467 aa20.29■□□□□ 0.84
CPNE6-204ENST00000557829 TNIKQ9UKE5 1360 aa20.25■□□□□ 0.83
CPNE6-204ENST00000557829 KIF27Q86VH2 1401 aa20.24■□□□□ 0.83
CPNE6-204ENST00000557829 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
CPNE6-204ENST00000557829 KIF21BO75037 1637 aa20.2■□□□□ 0.82
CPNE6-204ENST00000557829 ABCA10Q8WWZ4 1543 aa20.19■□□□□ 0.82
CPNE6-204ENST00000557829 GOLGA3Q08378 1498 aa20.17■□□□□ 0.82
CPNE6-204ENST00000557829 CCER1Q8TC90 406 aaPredicted RBP20.14■□□□□ 0.81
CPNE6-204ENST00000557829 TARBP1Q13395 1621 aaKnown RBP20.11■□□□□ 0.81
CPNE6-204ENST00000557829 IGF1RP08069 1367 aa20.11■□□□□ 0.81
CPNE6-204ENST00000557829 TDRD9Q8NDG6 1382 aaKnown RBP20.11■□□□□ 0.81
CPNE6-204ENST00000557829 WDR97A6NE52 1622 aa20.1■□□□□ 0.81
CPNE6-204ENST00000557829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.1■□□□□ 0.81
CPNE6-204ENST00000557829 ZNF608Q9ULD9 1512 aaPredicted RBP20.09■□□□□ 0.81
CPNE6-204ENST00000557829 PRXQ9BXM0 1461 aa20.08■□□□□ 0.81
CPNE6-204ENST00000557829 RAPGEF2Q9Y4G8 1499 aa20.08■□□□□ 0.8
CPNE6-204ENST00000557829 IFT140Q96RY7 1462 aa20.06■□□□□ 0.8
CPNE6-204ENST00000557829 UBTFP17480 764 aaKnown RBP20.04■□□□□ 0.8
CPNE6-204ENST00000557829 ABCA5Q8WWZ7 1642 aa20.03■□□□□ 0.8
CPNE6-204ENST00000557829 SCAF1Q9H7N4 1312 aaKnown RBP20.02■□□□□ 0.8
CPNE6-204ENST00000557829 GAPVD1Q14C86 1478 aa20.02■□□□□ 0.79
CPNE6-204ENST00000557829 ERICH3Q5RHP9 1530 aa20■□□□□ 0.79
CPNE6-204ENST00000557829 AQRO60306 1485 aaKnown RBP eCLIP20■□□□□ 0.79
CPNE6-204ENST00000557829 CARMIL1Q5VZK9 1371 aa19.99■□□□□ 0.79
CPNE6-204ENST00000557829 EIF4G3O43432 1585 aaKnown RBP19.99■□□□□ 0.79
CPNE6-204ENST00000557829 MYT1Q01538 1121 aa19.88■□□□□ 0.77
CPNE6-204ENST00000557829 DIEXFQ68CQ4 756 aaKnown RBP19.88■□□□□ 0.77
CPNE6-204ENST00000557829 CUL7Q14999 1698 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms