RNA–Protein interactions for RNA: ENST00000557382.1

PPP4R3A-212, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best)

Gene PPP4R3A, Length 844 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-212ENST00000557382 NISCHQ9Y2I1 1504 aa19.31■□□□□ 0.68
PPP4R3A-212ENST00000557382 AEBP2Q6ZN18 517 aaPredicted RBP19.3■□□□□ 0.68
PPP4R3A-212ENST00000557382 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
PPP4R3A-212ENST00000557382 CCDC180Q9P1Z9 1646 aa16.72■□□□□ 0.27
PPP4R3A-212ENST00000557382 SENP3Q9H4L4 574 aaPredicted RBP16.39■□□□□ 0.21
PPP4R3A-212ENST00000557382 ZCCHC6Q5VYS8 1495 aaKnown RBP16.3■□□□□ 0.2
PPP4R3A-212ENST00000557382 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
PPP4R3A-212ENST00000557382 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
PPP4R3A-212ENST00000557382 SHROOM4Q9ULL8 1493 aa15.88■□□□□ 0.13
PPP4R3A-212ENST00000557382 MYO15BQ96JP2 1530 aa15.73■□□□□ 0.11
PPP4R3A-212ENST00000557382 DCAF8L2P0C7V8 631 aa15.67■□□□□ 0.1
PPP4R3A-212ENST00000557382 SUPT5HO00267 1087 aaKnown RBP15.51■□□□□ 0.07
PPP4R3A-212ENST00000557382 NACADO15069 1562 aa15.45■□□□□ 0.06
PPP4R3A-212ENST00000557382 FOXD1Q16676 465 aa15.4■□□□□ 0.06
PPP4R3A-212ENST00000557382 ABCC9O60706 1549 aa15.33■□□□□ 0.05
PPP4R3A-212ENST00000557382 SCRIBQ14160 1630 aa15.31■□□□□ 0.04
PPP4R3A-212ENST00000557382 RB1CC1Q8TDY2 1594 aa15.2■□□□□ 0.02
PPP4R3A-212ENST00000557382 RSF1Q96T23 1441 aaPredicted RBP15.11■□□□□ 0.01
PPP4R3A-212ENST00000557382 UNC13AQ9UPW8 1703 aa14.92□□□□□ -0.02
PPP4R3A-212ENST00000557382 CECR2Q9BXF3 1484 aa14.9□□□□□ -0.02
PPP4R3A-212ENST00000557382 MROH2BQ7Z745 1585 aa14.9□□□□□ -0.02
PPP4R3A-212ENST00000557382 BAZ1AQ9NRL2 1556 aaPredicted RBP14.89□□□□□ -0.03
PPP4R3A-212ENST00000557382 POTEDQ86YR6 584 aa14.82□□□□□ -0.04
PPP4R3A-212ENST00000557382 WIZO95785 1651 aa14.8□□□□□ -0.04
PPP4R3A-212ENST00000557382 SMARCA4P51532 1647 aa14.76□□□□□ -0.05
PPP4R3A-212ENST00000557382 BICRAQ9NZM4 1560 aa14.71□□□□□ -0.05
PPP4R3A-212ENST00000557382 TOP2AP11388 1531 aaKnown RBP14.7□□□□□ -0.06
PPP4R3A-212ENST00000557382 EIF4G1Q04637 1599 aaKnown RBP14.62□□□□□ -0.07
PPP4R3A-212ENST00000557382 PEG3Q9GZU2 1588 aa14.61□□□□□ -0.07
PPP4R3A-212ENST00000557382 TRIM41Q8WV44 630 aa14.61□□□□□ -0.07
PPP4R3A-212ENST00000557382 SMARCA2P51531 1590 aa14.56□□□□□ -0.08
PPP4R3A-212ENST00000557382 CCDC88BA6NC98 1476 aa14.52□□□□□ -0.08
PPP4R3A-212ENST00000557382 LOC105371045A0A1W2PR82 267 aa14.5□□□□□ -0.09
PPP4R3A-212ENST00000557382 MSH5O43196 834 aa14.46□□□□□ -0.09
PPP4R3A-212ENST00000557382 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
PPP4R3A-212ENST00000557382 ATAD2BQ9ULI0 1458 aa14.4□□□□□ -0.1
PPP4R3A-212ENST00000557382 BAZ1BQ9UIG0 1483 aaKnown RBP14.34□□□□□ -0.11
PPP4R3A-212ENST00000557382 EEA1Q15075 1411 aa14.31□□□□□ -0.12
PPP4R3A-212ENST00000557382 ABCC8Q09428 1581 aa14.3□□□□□ -0.12
PPP4R3A-212ENST00000557382 HMGXB3Q12766 1538 aa14.27□□□□□ -0.12
PPP4R3A-212ENST00000557382 HRCP23327 699 aa14.27□□□□□ -0.13
PPP4R3A-212ENST00000557382 TRIM26Q12899 539 aaPredicted RBP14.27□□□□□ -0.13
PPP4R3A-212ENST00000557382 PCGF6Q9BYE7 350 aa14.27□□□□□ -0.13
PPP4R3A-212ENST00000557382 FAM9AQ8IZU1 332 aaPredicted RBP14.26□□□□□ -0.13
PPP4R3A-212ENST00000557382 NCAPD3P42695 1498 aa14.25□□□□□ -0.13
PPP4R3A-212ENST00000557382 WRNQ14191 1432 aaPredicted RBP eCLIP14.22□□□□□ -0.13
PPP4R3A-212ENST00000557382 PIAS4Q8N2W9 510 aaPredicted RBP14.21□□□□□ -0.13
PPP4R3A-212ENST00000557382 PPP6R1Q9UPN7 881 aa14.16□□□□□ -0.14
PPP4R3A-212ENST00000557382 TNIKQ9UKE5 1360 aa14.12□□□□□ -0.15
PPP4R3A-212ENST00000557382 SOGA1O94964 1423 aa14.12□□□□□ -0.15
PPP4R3A-212ENST00000557382 SYNJ1O43426 1573 aa14.12□□□□□ -0.15
PPP4R3A-212ENST00000557382 CSRNP3Q8WYN3 585 aa14.11□□□□□ -0.15
PPP4R3A-212ENST00000557382 TOP2BQ02880 1626 aa14.08□□□□□ -0.15
PPP4R3A-212ENST00000557382 BIVM-ERCC5R4GMW8 1640 aa14.08□□□□□ -0.15
PPP4R3A-212ENST00000557382 KIF21BO75037 1637 aa14.07□□□□□ -0.16
PPP4R3A-212ENST00000557382 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
PPP4R3A-212ENST00000557382 PLPPR3Q6T4P5 718 aa14.06□□□□□ -0.16
PPP4R3A-212ENST00000557382 PRDM2Q13029 1718 aa14.06□□□□□ -0.16
PPP4R3A-212ENST00000557382 ADRA2BP18089 450 aa14.03□□□□□ -0.16
PPP4R3A-212ENST00000557382 CEP164Q9UPV0 1460 aa14.03□□□□□ -0.16
PPP4R3A-212ENST00000557382 RUSC2Q8N2Y8 1516 aa14.03□□□□□ -0.16
PPP4R3A-212ENST00000557382 CFTRP13569 1480 aa14.02□□□□□ -0.16
PPP4R3A-212ENST00000557382 CEP162Q5TB80 1403 aa14.02□□□□□ -0.16
PPP4R3A-212ENST00000557382 ZEB1P37275 1124 aaPredicted RBP13.98□□□□□ -0.17
PPP4R3A-212ENST00000557382 EHMT2Q96KQ7 1210 aa13.97□□□□□ -0.17
PPP4R3A-212ENST00000557382 CUX1P39880 1505 aa13.91□□□□□ -0.18
PPP4R3A-212ENST00000557382 UBTFP17480 764 aaKnown RBP13.91□□□□□ -0.18
PPP4R3A-212ENST00000557382 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.18
PPP4R3A-212ENST00000557382 CC2D2AQ9P2K1 1620 aa13.9□□□□□ -0.18
PPP4R3A-212ENST00000557382 CADPSQ9ULU8 1353 aa13.88□□□□□ -0.19
PPP4R3A-212ENST00000557382 PRXQ9BXM0 1461 aa13.85□□□□□ -0.19
PPP4R3A-212ENST00000557382 KIF27Q86VH2 1401 aa13.84□□□□□ -0.19
PPP4R3A-212ENST00000557382 RAPGEF2Q9Y4G8 1499 aa13.83□□□□□ -0.2
PPP4R3A-212ENST00000557382 CLIP1P30622 1438 aa13.82□□□□□ -0.2
PPP4R3A-212ENST00000557382 VPS8Q8N3P4 1428 aa13.79□□□□□ -0.2
PPP4R3A-212ENST00000557382 PPARGC1BQ86YN6 1023 aaKnown RBP13.75□□□□□ -0.21
PPP4R3A-212ENST00000557382 FANCD2Q9BXW9 1451 aa13.71□□□□□ -0.21
PPP4R3A-212ENST00000557382 DNMBPQ6XZF7 1577 aa13.71□□□□□ -0.22
PPP4R3A-212ENST00000557382 LAMC3Q9Y6N6 1575 aa13.7□□□□□ -0.22
PPP4R3A-212ENST00000557382 FGD5Q6ZNL6 1462 aa13.69□□□□□ -0.22
PPP4R3A-212ENST00000557382 CUX2O14529 1486 aa13.67□□□□□ -0.22
PPP4R3A-212ENST00000557382 APLP2Q06481 763 aa13.65□□□□□ -0.22
PPP4R3A-212ENST00000557382 IGF1RP08069 1367 aa13.65□□□□□ -0.22
PPP4R3A-212ENST00000557382 ARAP1Q96P48 1450 aa13.64□□□□□ -0.23
PPP4R3A-212ENST00000557382 ABCA10Q8WWZ4 1543 aa13.63□□□□□ -0.23
PPP4R3A-212ENST00000557382 TOPBP1Q92547 1522 aa13.62□□□□□ -0.23
PPP4R3A-212ENST00000557382 CARMIL1Q5VZK9 1371 aa13.59□□□□□ -0.23
PPP4R3A-212ENST00000557382 CCER1Q8TC90 406 aaPredicted RBP13.58□□□□□ -0.24
PPP4R3A-212ENST00000557382 CUL7Q14999 1698 aa13.57□□□□□ -0.24
PPP4R3A-212ENST00000557382 POLA1P09884 1462 aaPredicted RBP13.56□□□□□ -0.24
PPP4R3A-212ENST00000557382 ARHGAP35Q9NRY4 1499 aa13.56□□□□□ -0.24
PPP4R3A-212ENST00000557382 WDR97A6NE52 1622 aa13.56□□□□□ -0.24
PPP4R3A-212ENST00000557382 PDS5BQ9NTI5 1447 aa13.56□□□□□ -0.24
PPP4R3A-212ENST00000557382 MAP3K1Q13233 1512 aa13.55□□□□□ -0.24
PPP4R3A-212ENST00000557382 NESP48681 1621 aa13.55□□□□□ -0.24
PPP4R3A-212ENST00000557382 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.54□□□□□ -0.24
PPP4R3A-212ENST00000557382 URB2Q14146 1524 aaKnown RBP13.5□□□□□ -0.25
PPP4R3A-212ENST00000557382 TTBK1Q5TCY1 1321 aaPredicted RBP13.5□□□□□ -0.25
PPP4R3A-212ENST00000557382 RAD54L2Q9Y4B4 1467 aa13.49□□□□□ -0.25
PPP4R3A-212ENST00000557382 EFCAB5A4FU69 1503 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms