RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 NISCHQ9Y2I1 1504 aa25.73■■□□□ 1.71
TMEM260-208ENST00000555905 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
TMEM260-208ENST00000555905 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
TMEM260-208ENST00000555905 CCDC180Q9P1Z9 1646 aa22.68■■□□□ 1.22
TMEM260-208ENST00000555905 ABCC9O60706 1549 aa21.7■■□□□ 1.06
TMEM260-208ENST00000555905 ZCCHC6Q5VYS8 1495 aaKnown RBP21.54■■□□□ 1.04
TMEM260-208ENST00000555905 DCAF8L2P0C7V8 631 aa21.35■■□□□ 1.01
TMEM260-208ENST00000555905 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
TMEM260-208ENST00000555905 MYO15BQ96JP2 1530 aa21.21■□□□□ 0.99
TMEM260-208ENST00000555905 NACADO15069 1562 aa21.2■□□□□ 0.98
TMEM260-208ENST00000555905 RB1CC1Q8TDY2 1594 aa21.11■□□□□ 0.97
TMEM260-208ENST00000555905 PHF23Q9BUL5 403 aaPredicted RBP21.01■□□□□ 0.95
TMEM260-208ENST00000555905 SENP3Q9H4L4 574 aaPredicted RBP20.98■□□□□ 0.95
TMEM260-208ENST00000555905 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
TMEM260-208ENST00000555905 SHROOM4Q9ULL8 1493 aa20.67■□□□□ 0.9
TMEM260-208ENST00000555905 UNC13AQ9UPW8 1703 aa20.64■□□□□ 0.89
TMEM260-208ENST00000555905 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
TMEM260-208ENST00000555905 PABPN1Q86U42 306 aaKnown RBP eCLIP20.36■□□□□ 0.85
TMEM260-208ENST00000555905 CECR2Q9BXF3 1484 aa19.98■□□□□ 0.79
TMEM260-208ENST00000555905 BAZ1AQ9NRL2 1556 aaPredicted RBP19.93■□□□□ 0.78
TMEM260-208ENST00000555905 SMARCA4P51532 1647 aa19.87■□□□□ 0.77
TMEM260-208ENST00000555905 EIF4G1Q04637 1599 aaKnown RBP19.85■□□□□ 0.77
TMEM260-208ENST00000555905 MROH2BQ7Z745 1585 aa19.84■□□□□ 0.77
TMEM260-208ENST00000555905 RSF1Q96T23 1441 aaPredicted RBP19.79■□□□□ 0.76
TMEM260-208ENST00000555905 SUPT5HO00267 1087 aaKnown RBP19.72■□□□□ 0.75
TMEM260-208ENST00000555905 WIZO95785 1651 aa19.67■□□□□ 0.74
TMEM260-208ENST00000555905 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
TMEM260-208ENST00000555905 CC2D2AQ9P2K1 1620 aa19.65■□□□□ 0.74
TMEM260-208ENST00000555905 SMARCA2P51531 1590 aa19.65■□□□□ 0.74
TMEM260-208ENST00000555905 ATAD2BQ9ULI0 1458 aa19.62■□□□□ 0.73
TMEM260-208ENST00000555905 NCAPD3P42695 1498 aa19.53■□□□□ 0.72
TMEM260-208ENST00000555905 FOXD1Q16676 465 aa19.52■□□□□ 0.72
TMEM260-208ENST00000555905 BAZ1BQ9UIG0 1483 aaKnown RBP19.52■□□□□ 0.72
TMEM260-208ENST00000555905 HMGXB3Q12766 1538 aa19.5■□□□□ 0.71
TMEM260-208ENST00000555905 TOP2AP11388 1531 aaKnown RBP19.49■□□□□ 0.71
TMEM260-208ENST00000555905 DNAJC5BQ9UF47 199 aa19.4■□□□□ 0.7
TMEM260-208ENST00000555905 PLPPR3Q6T4P5 718 aa19.3■□□□□ 0.68
TMEM260-208ENST00000555905 CCDC88BA6NC98 1476 aa19.25■□□□□ 0.67
TMEM260-208ENST00000555905 CADPSQ9ULU8 1353 aa19■□□□□ 0.63
TMEM260-208ENST00000555905 CFTRP13569 1480 aa18.98■□□□□ 0.63
TMEM260-208ENST00000555905 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
TMEM260-208ENST00000555905 PRDM2Q13029 1718 aa18.94■□□□□ 0.62
TMEM260-208ENST00000555905 NESP48681 1621 aa18.91■□□□□ 0.62
TMEM260-208ENST00000555905 PDS5BQ9NTI5 1447 aa18.82■□□□□ 0.6
TMEM260-208ENST00000555905 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
TMEM260-208ENST00000555905 KIF21AQ7Z4S6 1674 aa18.73■□□□□ 0.59
TMEM260-208ENST00000555905 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
TMEM260-208ENST00000555905 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
TMEM260-208ENST00000555905 ERCC6Q03468 1493 aa18.69■□□□□ 0.58
TMEM260-208ENST00000555905 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
TMEM260-208ENST00000555905 TRIM41Q8WV44 630 aa18.61■□□□□ 0.57
TMEM260-208ENST00000555905 PPP6R1Q9UPN7 881 aa18.61■□□□□ 0.57
TMEM260-208ENST00000555905 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
TMEM260-208ENST00000555905 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
TMEM260-208ENST00000555905 CUX1P39880 1505 aa18.59■□□□□ 0.57
TMEM260-208ENST00000555905 TOP2BQ02880 1626 aa18.58■□□□□ 0.56
TMEM260-208ENST00000555905 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
TMEM260-208ENST00000555905 BIVM-ERCC5R4GMW8 1640 aa18.57■□□□□ 0.56
TMEM260-208ENST00000555905 ADRA2BP18089 450 aa18.57■□□□□ 0.56
TMEM260-208ENST00000555905 URB2Q14146 1524 aaKnown RBP18.55■□□□□ 0.56
TMEM260-208ENST00000555905 TOPBP1Q92547 1522 aa18.54■□□□□ 0.56
TMEM260-208ENST00000555905 THOC2Q8NI27 1593 aaKnown RBP18.51■□□□□ 0.55
TMEM260-208ENST00000555905 WDR62O43379 1518 aa18.5■□□□□ 0.55
TMEM260-208ENST00000555905 FGD5Q6ZNL6 1462 aa18.46■□□□□ 0.54
TMEM260-208ENST00000555905 POLA1P09884 1462 aaPredicted RBP18.41■□□□□ 0.54
TMEM260-208ENST00000555905 SOGA1O94964 1423 aa18.36■□□□□ 0.53
TMEM260-208ENST00000555905 PIAS4Q8N2W9 510 aaPredicted RBP18.36■□□□□ 0.53
TMEM260-208ENST00000555905 RAD54L2Q9Y4B4 1467 aa18.33■□□□□ 0.52
TMEM260-208ENST00000555905 CUX2O14529 1486 aa18.32■□□□□ 0.52
TMEM260-208ENST00000555905 IFT140Q96RY7 1462 aa18.31■□□□□ 0.52
TMEM260-208ENST00000555905 TARBP1Q13395 1621 aaKnown RBP18.3■□□□□ 0.52
TMEM260-208ENST00000555905 ABCA10Q8WWZ4 1543 aa18.29■□□□□ 0.52
TMEM260-208ENST00000555905 WDR97A6NE52 1622 aa18.27■□□□□ 0.52
TMEM260-208ENST00000555905 KIF27Q86VH2 1401 aa18.25■□□□□ 0.51
TMEM260-208ENST00000555905 EEA1Q15075 1411 aa18.24■□□□□ 0.51
TMEM260-208ENST00000555905 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
TMEM260-208ENST00000555905 RUSC2Q8N2Y8 1516 aa18.2■□□□□ 0.5
TMEM260-208ENST00000555905 TDRD9Q8NDG6 1382 aaKnown RBP18.18■□□□□ 0.5
TMEM260-208ENST00000555905 ABCA5Q8WWZ7 1642 aa18.18■□□□□ 0.5
TMEM260-208ENST00000555905 GAPVD1Q14C86 1478 aa18.16■□□□□ 0.5
TMEM260-208ENST00000555905 ZNF608Q9ULD9 1512 aaPredicted RBP18.16■□□□□ 0.5
TMEM260-208ENST00000555905 AQRO60306 1485 aaKnown RBP eCLIP18.14■□□□□ 0.49
TMEM260-208ENST00000555905 EIF4G3O43432 1585 aaKnown RBP18.13■□□□□ 0.49
TMEM260-208ENST00000555905 CSRNP3Q8WYN3 585 aa18.13■□□□□ 0.49
TMEM260-208ENST00000555905 PBRM1Q86U86 1689 aa18.12■□□□□ 0.49
TMEM260-208ENST00000555905 ERICH3Q5RHP9 1530 aa18.1■□□□□ 0.49
TMEM260-208ENST00000555905 IGF1RP08069 1367 aa18.09■□□□□ 0.49
TMEM260-208ENST00000555905 GRIN2BQ13224 1484 aa18.08■□□□□ 0.49
TMEM260-208ENST00000555905 MSH5O43196 834 aa18.07■□□□□ 0.48
TMEM260-208ENST00000555905 CUL7Q14999 1698 aa18.06■□□□□ 0.48
TMEM260-208ENST00000555905 KIF21BO75037 1637 aa18.01■□□□□ 0.47
TMEM260-208ENST00000555905 CARMIL1Q5VZK9 1371 aa18.01■□□□□ 0.47
TMEM260-208ENST00000555905 PRXQ9BXM0 1461 aa18■□□□□ 0.47
TMEM260-208ENST00000555905 SNAPC4Q5SXM2 1469 aa17.99■□□□□ 0.47
TMEM260-208ENST00000555905 MAGI1Q96QZ7 1491 aaPredicted RBP17.99■□□□□ 0.47
TMEM260-208ENST00000555905 ADAMTS12P58397 1594 aa17.97■□□□□ 0.47
TMEM260-208ENST00000555905 FHAD1B1AJZ9 1412 aa17.97■□□□□ 0.47
TMEM260-208ENST00000555905 RAPGEF2Q9Y4G8 1499 aa17.96■□□□□ 0.47
TMEM260-208ENST00000555905 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
TMEM260-208ENST00000555905 EHMT2Q96KQ7 1210 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 185.3 ms