RNA–Protein interactions for RNA: ENST00000553096.5

BEST3-212, Transcript of bestrophin 3, humanhuman

TSL 1 (best) BASIC

Gene BEST3, Length 2,929 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-212ENST00000553096 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
BEST3-212ENST00000553096 CCDC180Q9P1Z9 1646 aa13.52□□□□□ -0.24
BEST3-212ENST00000553096 ZCCHC6Q5VYS8 1495 aaKnown RBP13.21□□□□□ -0.29
BEST3-212ENST00000553096 ABCC9O60706 1549 aa13.03□□□□□ -0.32
BEST3-212ENST00000553096 SHROOM4Q9ULL8 1493 aa13□□□□□ -0.33
BEST3-212ENST00000553096 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
BEST3-212ENST00000553096 DCAF8L2P0C7V8 631 aa12.73□□□□□ -0.37
BEST3-212ENST00000553096 MYO15BQ96JP2 1530 aa12.58□□□□□ -0.39
BEST3-212ENST00000553096 SUPT5HO00267 1087 aaKnown RBP12.57□□□□□ -0.4
BEST3-212ENST00000553096 SCRIBQ14160 1630 aa12.54□□□□□ -0.4
BEST3-212ENST00000553096 NACADO15069 1562 aa12.45□□□□□ -0.42
BEST3-212ENST00000553096 RB1CC1Q8TDY2 1594 aa12.41□□□□□ -0.42
BEST3-212ENST00000553096 PELP1Q8IZL8 1130 aaKnown RBP12.35□□□□□ -0.43
BEST3-212ENST00000553096 UNC13AQ9UPW8 1703 aa12.3□□□□□ -0.44
BEST3-212ENST00000553096 PABPN1Q86U42 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
BEST3-212ENST00000553096 RSF1Q96T23 1441 aaPredicted RBP12.23□□□□□ -0.45
BEST3-212ENST00000553096 MYT1Q01538 1121 aa12.21□□□□□ -0.45
BEST3-212ENST00000553096 CHIC1Q5VXU3 224 aa12.18□□□□□ -0.46
BEST3-212ENST00000553096 CECR2Q9BXF3 1484 aa12.18□□□□□ -0.46
BEST3-212ENST00000553096 MROH2BQ7Z745 1585 aa12.14□□□□□ -0.47
BEST3-212ENST00000553096 WIZO95785 1651 aa12.12□□□□□ -0.47
BEST3-212ENST00000553096 HRCP23327 699 aa12.11□□□□□ -0.47
BEST3-212ENST00000553096 BICRAQ9NZM4 1560 aa12.07□□□□□ -0.48
BEST3-212ENST00000553096 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
BEST3-212ENST00000553096 SMARCA4P51532 1647 aa12□□□□□ -0.49
BEST3-212ENST00000553096 DNAJC5BQ9UF47 199 aa12□□□□□ -0.49
BEST3-212ENST00000553096 EIF4G1Q04637 1599 aaKnown RBP11.94□□□□□ -0.5
BEST3-212ENST00000553096 PRKCSHP14314 528 aaPredicted RBP11.92□□□□□ -0.5
BEST3-212ENST00000553096 TOP2AP11388 1531 aaKnown RBP11.9□□□□□ -0.5
BEST3-212ENST00000553096 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
BEST3-212ENST00000553096 PCGF6Q9BYE7 350 aa11.85□□□□□ -0.51
BEST3-212ENST00000553096 SMARCA2P51531 1590 aa11.85□□□□□ -0.51
BEST3-212ENST00000553096 TTBK1Q5TCY1 1321 aaPredicted RBP11.83□□□□□ -0.52
BEST3-212ENST00000553096 PEG3Q9GZU2 1588 aa11.81□□□□□ -0.52
BEST3-212ENST00000553096 CCDC88BA6NC98 1476 aa11.79□□□□□ -0.52
BEST3-212ENST00000553096 LOC105371045A0A1W2PR82 267 aa11.78□□□□□ -0.52
BEST3-212ENST00000553096 TRIM41Q8WV44 630 aa11.73□□□□□ -0.53
BEST3-212ENST00000553096 CC2D2AQ9P2K1 1620 aa11.72□□□□□ -0.53
BEST3-212ENST00000553096 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
BEST3-212ENST00000553096 TRIM26Q12899 539 aaPredicted RBP11.67□□□□□ -0.54
BEST3-212ENST00000553096 ATAD2BQ9ULI0 1458 aa11.67□□□□□ -0.54
BEST3-212ENST00000553096 PPARGC1BQ86YN6 1023 aaKnown RBP11.67□□□□□ -0.54
BEST3-212ENST00000553096 ZEB1P37275 1124 aaPredicted RBP11.63□□□□□ -0.55
BEST3-212ENST00000553096 BAZ1BQ9UIG0 1483 aaKnown RBP11.61□□□□□ -0.55
BEST3-212ENST00000553096 FAM9AQ8IZU1 332 aaPredicted RBP11.6□□□□□ -0.55
BEST3-212ENST00000553096 APLP2Q06481 763 aa11.58□□□□□ -0.56
BEST3-212ENST00000553096 SYNJ1O43426 1573 aa11.54□□□□□ -0.56
BEST3-212ENST00000553096 HMGXB3Q12766 1538 aa11.53□□□□□ -0.56
BEST3-212ENST00000553096 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
BEST3-212ENST00000553096 SOGA1O94964 1423 aa11.49□□□□□ -0.57
BEST3-212ENST00000553096 RUSC2Q8N2Y8 1516 aa11.48□□□□□ -0.57
BEST3-212ENST00000553096 ERICH6Q7L0X2 663 aa11.48□□□□□ -0.57
BEST3-212ENST00000553096 NCAPD3P42695 1498 aa11.48□□□□□ -0.57
BEST3-212ENST00000553096 WRNQ14191 1432 aaPredicted RBP eCLIP11.47□□□□□ -0.57
BEST3-212ENST00000553096 PRDM2Q13029 1718 aa11.45□□□□□ -0.58
BEST3-212ENST00000553096 BIVM-ERCC5R4GMW8 1640 aa11.43□□□□□ -0.58
BEST3-212ENST00000553096 TOP2BQ02880 1626 aa11.41□□□□□ -0.58
BEST3-212ENST00000553096 EEA1Q15075 1411 aa11.37□□□□□ -0.59
BEST3-212ENST00000553096 BCL11AQ9H165 835 aa11.36□□□□□ -0.59
BEST3-212ENST00000553096 KIF21BO75037 1637 aa11.35□□□□□ -0.59
BEST3-212ENST00000553096 CFTRP13569 1480 aa11.34□□□□□ -0.59
BEST3-212ENST00000553096 CUX1P39880 1505 aa11.33□□□□□ -0.6
BEST3-212ENST00000553096 CEP162Q5TB80 1403 aa11.31□□□□□ -0.6
BEST3-212ENST00000553096 CSRNP3Q8WYN3 585 aa11.3□□□□□ -0.6
BEST3-212ENST00000553096 GOLGA3Q08378 1498 aa11.3□□□□□ -0.6
BEST3-212ENST00000553096 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
BEST3-212ENST00000553096 NESP48681 1621 aa11.28□□□□□ -0.6
BEST3-212ENST00000553096 CEP164Q9UPV0 1460 aa11.26□□□□□ -0.61
BEST3-212ENST00000553096 SCAF1Q9H7N4 1312 aaKnown RBP11.26□□□□□ -0.61
BEST3-212ENST00000553096 RAPGEF2Q9Y4G8 1499 aa11.24□□□□□ -0.61
BEST3-212ENST00000553096 DAXXQ9UER7 740 aaPredicted RBP11.21□□□□□ -0.61
BEST3-212ENST00000553096 ERCC6Q03468 1493 aa11.21□□□□□ -0.62
BEST3-212ENST00000553096 CADPSQ9ULU8 1353 aa11.19□□□□□ -0.62
BEST3-212ENST00000553096 ERICH3Q5RHP9 1530 aa11.18□□□□□ -0.62
BEST3-212ENST00000553096 UBTFP17480 764 aaKnown RBP11.18□□□□□ -0.62
BEST3-212ENST00000553096 PRXQ9BXM0 1461 aa11.17□□□□□ -0.62
BEST3-212ENST00000553096 LAMC3Q9Y6N6 1575 aa11.14□□□□□ -0.63
BEST3-212ENST00000553096 ACIN1Q9UKV3 1341 aaKnown RBP11.14□□□□□ -0.63
BEST3-212ENST00000553096 CLIP1P30622 1438 aa11.13□□□□□ -0.63
BEST3-212ENST00000553096 FGD5Q6ZNL6 1462 aa11.13□□□□□ -0.63
BEST3-212ENST00000553096 FANCD2Q9BXW9 1451 aa11.12□□□□□ -0.63
BEST3-212ENST00000553096 CENPBP07199 599 aaPredicted RBP11.12□□□□□ -0.63
BEST3-212ENST00000553096 KIF27Q86VH2 1401 aa11.11□□□□□ -0.63
BEST3-212ENST00000553096 CCER1Q8TC90 406 aaPredicted RBP11.11□□□□□ -0.63
BEST3-212ENST00000553096 DNMBPQ6XZF7 1577 aa11.1□□□□□ -0.63
BEST3-212ENST00000553096 PDS5BQ9NTI5 1447 aa11.1□□□□□ -0.63
BEST3-212ENST00000553096 WDR97A6NE52 1622 aa11.08□□□□□ -0.63
BEST3-212ENST00000553096 VPS8Q8N3P4 1428 aa11.08□□□□□ -0.64
BEST3-212ENST00000553096 KIF21AQ7Z4S6 1674 aa11.08□□□□□ -0.64
BEST3-212ENST00000553096 ARAP1Q96P48 1450 aa11.08□□□□□ -0.64
BEST3-212ENST00000553096 CUX2O14529 1486 aa11.07□□□□□ -0.64
BEST3-212ENST00000553096 TOPBP1Q92547 1522 aa11.06□□□□□ -0.64
BEST3-212ENST00000553096 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
BEST3-212ENST00000553096 DIEXFQ68CQ4 756 aaKnown RBP11.04□□□□□ -0.64
BEST3-212ENST00000553096 POLA1P09884 1462 aaPredicted RBP11.03□□□□□ -0.64
BEST3-212ENST00000553096 URB2Q14146 1524 aaKnown RBP11.03□□□□□ -0.64
BEST3-212ENST00000553096 RAD54L2Q9Y4B4 1467 aa11.03□□□□□ -0.64
BEST3-212ENST00000553096 NEUROD1Q13562 356 aa11.02□□□□□ -0.64
BEST3-212ENST00000553096 IGF1RP08069 1367 aa11.02□□□□□ -0.64
BEST3-212ENST00000553096 ABCA10Q8WWZ4 1543 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms