RNA–Protein interactions for RNA: ENST00000552773.1

RFX4-210, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 1,659 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-210ENST00000552773 NISCHQ9Y2I1 1504 aa22.15■■□□□ 1.14
RFX4-210ENST00000552773 CCDC180Q9P1Z9 1646 aa19.17■□□□□ 0.66
RFX4-210ENST00000552773 ZCCHC6Q5VYS8 1495 aaKnown RBP18.7■□□□□ 0.58
RFX4-210ENST00000552773 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
RFX4-210ENST00000552773 SHROOM4Q9ULL8 1493 aa18.26■□□□□ 0.51
RFX4-210ENST00000552773 DCAF8L2P0C7V8 631 aa18.11■□□□□ 0.49
RFX4-210ENST00000552773 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
RFX4-210ENST00000552773 SUPT5HO00267 1087 aaKnown RBP17.9■□□□□ 0.46
RFX4-210ENST00000552773 NACADO15069 1562 aa17.77■□□□□ 0.44
RFX4-210ENST00000552773 ABCC9O60706 1549 aa17.59■□□□□ 0.41
RFX4-210ENST00000552773 SCRIBQ14160 1630 aa17.54■□□□□ 0.4
RFX4-210ENST00000552773 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
RFX4-210ENST00000552773 CHIC1Q5VXU3 224 aa17.4■□□□□ 0.38
RFX4-210ENST00000552773 RSF1Q96T23 1441 aaPredicted RBP17.33■□□□□ 0.37
RFX4-210ENST00000552773 BAZ1AQ9NRL2 1556 aaPredicted RBP17.14■□□□□ 0.33
RFX4-210ENST00000552773 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
RFX4-210ENST00000552773 CECR2Q9BXF3 1484 aa17.04■□□□□ 0.32
RFX4-210ENST00000552773 UNC13AQ9UPW8 1703 aa16.93■□□□□ 0.3
RFX4-210ENST00000552773 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
RFX4-210ENST00000552773 WIZO95785 1651 aa16.91■□□□□ 0.3
RFX4-210ENST00000552773 SMARCA4P51532 1647 aa16.91■□□□□ 0.3
RFX4-210ENST00000552773 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
RFX4-210ENST00000552773 BICRAQ9NZM4 1560 aa16.76■□□□□ 0.27
RFX4-210ENST00000552773 PEG3Q9GZU2 1588 aa16.74■□□□□ 0.27
RFX4-210ENST00000552773 SMARCA2P51531 1590 aa16.67■□□□□ 0.26
RFX4-210ENST00000552773 EIF4G1Q04637 1599 aaKnown RBP16.66■□□□□ 0.26
RFX4-210ENST00000552773 LOC105371045A0A1W2PR82 267 aa16.65■□□□□ 0.26
RFX4-210ENST00000552773 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
RFX4-210ENST00000552773 PABPN1Q86U42 306 aaKnown RBP eCLIP16.6■□□□□ 0.25
RFX4-210ENST00000552773 EEA1Q15075 1411 aa16.56■□□□□ 0.24
RFX4-210ENST00000552773 TRIM26Q12899 539 aaPredicted RBP16.54■□□□□ 0.24
RFX4-210ENST00000552773 ATAD2BQ9ULI0 1458 aa16.52■□□□□ 0.24
RFX4-210ENST00000552773 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
RFX4-210ENST00000552773 HRCP23327 699 aa16.5■□□□□ 0.23
RFX4-210ENST00000552773 BAZ1BQ9UIG0 1483 aaKnown RBP16.5■□□□□ 0.23
RFX4-210ENST00000552773 FAM9AQ8IZU1 332 aaPredicted RBP16.46■□□□□ 0.23
RFX4-210ENST00000552773 HMGXB3Q12766 1538 aa16.39■□□□□ 0.21
RFX4-210ENST00000552773 WRNQ14191 1432 aaPredicted RBP eCLIP16.37■□□□□ 0.21
RFX4-210ENST00000552773 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
RFX4-210ENST00000552773 NCAPD3P42695 1498 aa16.36■□□□□ 0.21
RFX4-210ENST00000552773 ZEB1P37275 1124 aaPredicted RBP16.31■□□□□ 0.2
RFX4-210ENST00000552773 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
RFX4-210ENST00000552773 TNIKQ9UKE5 1360 aa16.28■□□□□ 0.2
RFX4-210ENST00000552773 GOLGA3Q08378 1498 aa16.24■□□□□ 0.19
RFX4-210ENST00000552773 CEP164Q9UPV0 1460 aa16.2■□□□□ 0.18
RFX4-210ENST00000552773 SOGA1O94964 1423 aa16.2■□□□□ 0.18
RFX4-210ENST00000552773 KIF21BO75037 1637 aa16.17■□□□□ 0.18
RFX4-210ENST00000552773 TOP2BQ02880 1626 aa16.16■□□□□ 0.18
RFX4-210ENST00000552773 SYNJ1O43426 1573 aa16.16■□□□□ 0.18
RFX4-210ENST00000552773 CEP162Q5TB80 1403 aa16.15■□□□□ 0.18
RFX4-210ENST00000552773 BIVM-ERCC5R4GMW8 1640 aa16.13■□□□□ 0.17
RFX4-210ENST00000552773 UBTFP17480 764 aaKnown RBP16.12■□□□□ 0.17
RFX4-210ENST00000552773 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
RFX4-210ENST00000552773 CFTRP13569 1480 aa16.1■□□□□ 0.17
RFX4-210ENST00000552773 PRDM2Q13029 1718 aa16.05■□□□□ 0.16
RFX4-210ENST00000552773 RUSC2Q8N2Y8 1516 aa16.03■□□□□ 0.16
RFX4-210ENST00000552773 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
RFX4-210ENST00000552773 KIF27Q86VH2 1401 aa15.98■□□□□ 0.15
RFX4-210ENST00000552773 CADPSQ9ULU8 1353 aa15.97■□□□□ 0.15
RFX4-210ENST00000552773 CLIP1P30622 1438 aa15.95■□□□□ 0.14
RFX4-210ENST00000552773 AEBP2Q6ZN18 517 aaPredicted RBP15.93■□□□□ 0.14
RFX4-210ENST00000552773 APLP2Q06481 763 aa15.92■□□□□ 0.14
RFX4-210ENST00000552773 CUX1P39880 1505 aa15.92■□□□□ 0.14
RFX4-210ENST00000552773 CC2D2AQ9P2K1 1620 aa15.91■□□□□ 0.14
RFX4-210ENST00000552773 PRXQ9BXM0 1461 aa15.91■□□□□ 0.14
RFX4-210ENST00000552773 VPS8Q8N3P4 1428 aa15.9■□□□□ 0.14
RFX4-210ENST00000552773 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
RFX4-210ENST00000552773 PPARGC1BQ86YN6 1023 aaKnown RBP15.79■□□□□ 0.12
RFX4-210ENST00000552773 CCER1Q8TC90 406 aaPredicted RBP15.79■□□□□ 0.12
RFX4-210ENST00000552773 FANCD2Q9BXW9 1451 aa15.77■□□□□ 0.11
RFX4-210ENST00000552773 LAMC3Q9Y6N6 1575 aa15.74■□□□□ 0.11
RFX4-210ENST00000552773 CUX2O14529 1486 aa15.74■□□□□ 0.11
RFX4-210ENST00000552773 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
RFX4-210ENST00000552773 FGD5Q6ZNL6 1462 aa15.72■□□□□ 0.11
RFX4-210ENST00000552773 IGF1RP08069 1367 aa15.68■□□□□ 0.1
RFX4-210ENST00000552773 CARMIL1Q5VZK9 1371 aa15.66■□□□□ 0.1
RFX4-210ENST00000552773 PDS5BQ9NTI5 1447 aa15.66■□□□□ 0.1
RFX4-210ENST00000552773 ABCA10Q8WWZ4 1543 aa15.65■□□□□ 0.1
RFX4-210ENST00000552773 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
RFX4-210ENST00000552773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.63■□□□□ 0.09
RFX4-210ENST00000552773 MAP3K1Q13233 1512 aa15.62■□□□□ 0.09
RFX4-210ENST00000552773 TOPBP1Q92547 1522 aa15.62■□□□□ 0.09
RFX4-210ENST00000552773 CUL7Q14999 1698 aa15.62■□□□□ 0.09
RFX4-210ENST00000552773 FHAD1B1AJZ9 1412 aa15.6■□□□□ 0.09
RFX4-210ENST00000552773 TTBK1Q5TCY1 1321 aaPredicted RBP15.59■□□□□ 0.09
RFX4-210ENST00000552773 POLA1P09884 1462 aaPredicted RBP15.57■□□□□ 0.08
RFX4-210ENST00000552773 ARHGAP35Q9NRY4 1499 aa15.57■□□□□ 0.08
RFX4-210ENST00000552773 CLSPNQ9HAW4 1339 aa15.57■□□□□ 0.08
RFX4-210ENST00000552773 EFCAB5A4FU69 1503 aa15.55■□□□□ 0.08
RFX4-210ENST00000552773 RANGAP1P46060 587 aaPredicted RBP15.54■□□□□ 0.08
RFX4-210ENST00000552773 RRBP1Q9P2E9 1410 aaKnown RBP15.5■□□□□ 0.07
RFX4-210ENST00000552773 NESP48681 1621 aa15.48■□□□□ 0.07
RFX4-210ENST00000552773 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
RFX4-210ENST00000552773 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
RFX4-210ENST00000552773 AQRO60306 1485 aaKnown RBP eCLIP15.46■□□□□ 0.07
RFX4-210ENST00000552773 URB2Q14146 1524 aaKnown RBP15.46■□□□□ 0.07
RFX4-210ENST00000552773 RAD54L2Q9Y4B4 1467 aa15.45■□□□□ 0.06
RFX4-210ENST00000552773 TIAM1Q13009 1591 aa15.44■□□□□ 0.06
RFX4-210ENST00000552773 CTTNBP2Q8WZ74 1663 aa15.44■□□□□ 0.06
RFX4-210ENST00000552773 FMN1Q68DA7 1419 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms