RNA–Protein interactions for RNA: ENST00000547562.5

BRF1-212, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 2

Gene BRF1, Length 2,405 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-212ENST00000547562 NISCHQ9Y2I1 1504 aa33.11■■■□□ 2.89
BRF1-212ENST00000547562 CCDC180Q9P1Z9 1646 aa28.42■■■□□ 2.14
BRF1-212ENST00000547562 ZCCHC6Q5VYS8 1495 aaKnown RBP27.98■■■□□ 2.07
BRF1-212ENST00000547562 SHROOM4Q9ULL8 1493 aa27.78■■■□□ 2.04
BRF1-212ENST00000547562 DCAF1Q9Y4B6 1507 aa27.29■■□□□ 1.96
BRF1-212ENST00000547562 DCAF8L2P0C7V8 631 aa27.24■■□□□ 1.95
BRF1-212ENST00000547562 SUPT5HO00267 1087 aaKnown RBP27.12■■□□□ 1.93
BRF1-212ENST00000547562 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
BRF1-212ENST00000547562 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
BRF1-212ENST00000547562 ABCC9O60706 1549 aa26.36■■□□□ 1.81
BRF1-212ENST00000547562 CHIC1Q5VXU3 224 aa26.33■■□□□ 1.81
BRF1-212ENST00000547562 NACADO15069 1562 aa26.28■■□□□ 1.8
BRF1-212ENST00000547562 RSF1Q96T23 1441 aaPredicted RBP26.04■■□□□ 1.76
BRF1-212ENST00000547562 RB1CC1Q8TDY2 1594 aa25.88■■□□□ 1.73
BRF1-212ENST00000547562 CECR2Q9BXF3 1484 aa25.75■■□□□ 1.71
BRF1-212ENST00000547562 MROH2BQ7Z745 1585 aa25.67■■□□□ 1.7
BRF1-212ENST00000547562 WIZO95785 1651 aa25.54■■□□□ 1.68
BRF1-212ENST00000547562 UNC13AQ9UPW8 1703 aa25.52■■□□□ 1.68
BRF1-212ENST00000547562 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
BRF1-212ENST00000547562 LOC105371045A0A1W2PR82 267 aa25.44■■□□□ 1.66
BRF1-212ENST00000547562 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
BRF1-212ENST00000547562 SMARCA4P51532 1647 aa25.3■■□□□ 1.64
BRF1-212ENST00000547562 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
BRF1-212ENST00000547562 EIF4G1Q04637 1599 aaKnown RBP25.15■■□□□ 1.62
BRF1-212ENST00000547562 BICRAQ9NZM4 1560 aa25.15■■□□□ 1.62
BRF1-212ENST00000547562 PCGF6Q9BYE7 350 aa25.15■■□□□ 1.62
BRF1-212ENST00000547562 HRCP23327 699 aa25.05■■□□□ 1.6
BRF1-212ENST00000547562 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
BRF1-212ENST00000547562 FAM9AQ8IZU1 332 aaPredicted RBP25.02■■□□□ 1.6
BRF1-212ENST00000547562 CCDC88BA6NC98 1476 aa25.01■■□□□ 1.59
BRF1-212ENST00000547562 PABPN1Q86U42 306 aaKnown RBP eCLIP25.01■■□□□ 1.59
BRF1-212ENST00000547562 PEG3Q9GZU2 1588 aa24.89■■□□□ 1.58
BRF1-212ENST00000547562 TRIM26Q12899 539 aaPredicted RBP24.85■■□□□ 1.57
BRF1-212ENST00000547562 ABCC8Q09428 1581 aa24.81■■□□□ 1.56
BRF1-212ENST00000547562 EHMT2Q96KQ7 1210 aa24.72■■□□□ 1.55
BRF1-212ENST00000547562 ATAD2BQ9ULI0 1458 aa24.66■■□□□ 1.54
BRF1-212ENST00000547562 BAZ1BQ9UIG0 1483 aaKnown RBP24.58■■□□□ 1.53
BRF1-212ENST00000547562 SOGA1O94964 1423 aa24.5■■□□□ 1.51
BRF1-212ENST00000547562 EEA1Q15075 1411 aa24.49■■□□□ 1.51
BRF1-212ENST00000547562 WRNQ14191 1432 aaPredicted RBP eCLIP24.48■■□□□ 1.51
BRF1-212ENST00000547562 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
BRF1-212ENST00000547562 RUSC2Q8N2Y8 1516 aa24.39■■□□□ 1.49
BRF1-212ENST00000547562 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
BRF1-212ENST00000547562 CSRNP3Q8WYN3 585 aa24.36■■□□□ 1.49
BRF1-212ENST00000547562 TNIKQ9UKE5 1360 aa24.33■■□□□ 1.49
BRF1-212ENST00000547562 CEP162Q5TB80 1403 aa24.31■■□□□ 1.48
BRF1-212ENST00000547562 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
BRF1-212ENST00000547562 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
BRF1-212ENST00000547562 GOLGA3Q08378 1498 aa24.25■■□□□ 1.47
BRF1-212ENST00000547562 ZEB1P37275 1124 aaPredicted RBP24.23■■□□□ 1.47
BRF1-212ENST00000547562 KIF21BO75037 1637 aa24.18■■□□□ 1.46
BRF1-212ENST00000547562 UBTFP17480 764 aaKnown RBP24.18■■□□□ 1.46
BRF1-212ENST00000547562 TOP2BQ02880 1626 aa24.17■■□□□ 1.46
BRF1-212ENST00000547562 CEP164Q9UPV0 1460 aa24.16■■□□□ 1.46
BRF1-212ENST00000547562 BIVM-ERCC5R4GMW8 1640 aa24.12■■□□□ 1.45
BRF1-212ENST00000547562 CFTRP13569 1480 aa23.99■■□□□ 1.43
BRF1-212ENST00000547562 RAPGEF2Q9Y4G8 1499 aa23.96■■□□□ 1.43
BRF1-212ENST00000547562 CUX1P39880 1505 aa23.94■■□□□ 1.42
BRF1-212ENST00000547562 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
BRF1-212ENST00000547562 CLIP1P30622 1438 aa23.92■■□□□ 1.42
BRF1-212ENST00000547562 TTBK1Q5TCY1 1321 aaPredicted RBP23.88■■□□□ 1.41
BRF1-212ENST00000547562 ERICH3Q5RHP9 1530 aa23.84■■□□□ 1.41
BRF1-212ENST00000547562 PRXQ9BXM0 1461 aa23.82■■□□□ 1.4
BRF1-212ENST00000547562 VPS8Q8N3P4 1428 aa23.81■■□□□ 1.4
BRF1-212ENST00000547562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.81■■□□□ 1.4
BRF1-212ENST00000547562 CC2D2AQ9P2K1 1620 aa23.78■■□□□ 1.4
BRF1-212ENST00000547562 CCER1Q8TC90 406 aaPredicted RBP23.77■■□□□ 1.4
BRF1-212ENST00000547562 KIF27Q86VH2 1401 aa23.76■■□□□ 1.39
BRF1-212ENST00000547562 CADPSQ9ULU8 1353 aa23.74■■□□□ 1.39
BRF1-212ENST00000547562 RANGAP1P46060 587 aaPredicted RBP23.63■■□□□ 1.37
BRF1-212ENST00000547562 APLP2Q06481 763 aa23.61■■□□□ 1.37
BRF1-212ENST00000547562 ARAP1Q96P48 1450 aa23.59■■□□□ 1.37
BRF1-212ENST00000547562 CUX2O14529 1486 aa23.56■■□□□ 1.36
BRF1-212ENST00000547562 FGD5Q6ZNL6 1462 aa23.54■■□□□ 1.36
BRF1-212ENST00000547562 FANCD2Q9BXW9 1451 aa23.51■■□□□ 1.35
BRF1-212ENST00000547562 IGF1RP08069 1367 aa23.49■■□□□ 1.35
BRF1-212ENST00000547562 ARHGAP35Q9NRY4 1499 aa23.43■■□□□ 1.34
BRF1-212ENST00000547562 HNRNPUL2Q1KMD3 747 aaKnown RBP23.43■■□□□ 1.34
BRF1-212ENST00000547562 DNMBPQ6XZF7 1577 aa23.42■■□□□ 1.34
BRF1-212ENST00000547562 CARMIL1Q5VZK9 1371 aa23.39■■□□□ 1.33
BRF1-212ENST00000547562 NESP48681 1621 aa23.36■■□□□ 1.33
BRF1-212ENST00000547562 TOPBP1Q92547 1522 aa23.35■■□□□ 1.33
BRF1-212ENST00000547562 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
BRF1-212ENST00000547562 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
BRF1-212ENST00000547562 ABCA10Q8WWZ4 1543 aa23.31■■□□□ 1.32
BRF1-212ENST00000547562 POLA1P09884 1462 aaPredicted RBP23.31■■□□□ 1.32
BRF1-212ENST00000547562 RAD54L2Q9Y4B4 1467 aa23.28■■□□□ 1.32
BRF1-212ENST00000547562 RRBP1Q9P2E9 1410 aaKnown RBP23.23■■□□□ 1.31
BRF1-212ENST00000547562 CUL7Q14999 1698 aa23.2■■□□□ 1.3
BRF1-212ENST00000547562 MAP3K1Q13233 1512 aa23.19■■□□□ 1.3
BRF1-212ENST00000547562 WDR97A6NE52 1622 aa23.18■■□□□ 1.3
BRF1-212ENST00000547562 URB2Q14146 1524 aaKnown RBP23.18■■□□□ 1.3
BRF1-212ENST00000547562 TIAM1Q13009 1591 aa23.17■■□□□ 1.3
BRF1-212ENST00000547562 DIEXFQ68CQ4 756 aaKnown RBP23.16■■□□□ 1.3
BRF1-212ENST00000547562 FHAD1B1AJZ9 1412 aa23.12■■□□□ 1.29
BRF1-212ENST00000547562 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
BRF1-212ENST00000547562 CCNB3Q8WWL7 1395 aa23.11■■□□□ 1.29
BRF1-212ENST00000547562 CTTNBP2Q8WZ74 1663 aa23.11■■□□□ 1.29
BRF1-212ENST00000547562 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
BRF1-212ENST00000547562 EFCAB5A4FU69 1503 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms