RNA–Protein interactions for RNA: ENST00000544800.1

CIT-215, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-215ENST00000544800 AEBP2Q6ZN18 517 aaPredicted RBP19.37■□□□□ 0.69
CIT-215ENST00000544800 NISCHQ9Y2I1 1504 aa18.34■□□□□ 0.53
CIT-215ENST00000544800 CHIC1Q5VXU3 224 aa18.26■□□□□ 0.51
CIT-215ENST00000544800 DNAJC5BQ9UF47 199 aa18.21■□□□□ 0.51
CIT-215ENST00000544800 ABCC9O60706 1549 aa18.17■□□□□ 0.5
CIT-215ENST00000544800 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
CIT-215ENST00000544800 CCDC180Q9P1Z9 1646 aa16.9■□□□□ 0.3
CIT-215ENST00000544800 PABPN1Q86U42 306 aaKnown RBP eCLIP16.79■□□□□ 0.28
CIT-215ENST00000544800 RB1CC1Q8TDY2 1594 aa16.75■□□□□ 0.27
CIT-215ENST00000544800 CECR2Q9BXF3 1484 aa16.52■□□□□ 0.23
CIT-215ENST00000544800 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
CIT-215ENST00000544800 NACADO15069 1562 aa16.35■□□□□ 0.21
CIT-215ENST00000544800 TRIM41Q8WV44 630 aa16.33■□□□□ 0.2
CIT-215ENST00000544800 CC2D2AQ9P2K1 1620 aa16.3■□□□□ 0.2
CIT-215ENST00000544800 BICRAQ9NZM4 1560 aa16.27■□□□□ 0.2
CIT-215ENST00000544800 PHF23Q9BUL5 403 aaPredicted RBP16.27■□□□□ 0.2
CIT-215ENST00000544800 UNC13AQ9UPW8 1703 aa16.2■□□□□ 0.18
CIT-215ENST00000544800 CUX2O14529 1486 aa16.19■□□□□ 0.18
CIT-215ENST00000544800 DCAF8L2P0C7V8 631 aa16.12■□□□□ 0.17
CIT-215ENST00000544800 SHROOM4Q9ULL8 1493 aa16■□□□□ 0.15
CIT-215ENST00000544800 EIF4G1Q04637 1599 aaKnown RBP15.99■□□□□ 0.15
CIT-215ENST00000544800 ERCC6Q03468 1493 aa15.8■□□□□ 0.12
CIT-215ENST00000544800 MYO15BQ96JP2 1530 aa15.76■□□□□ 0.11
CIT-215ENST00000544800 SCRIBQ14160 1630 aa15.43■□□□□ 0.06
CIT-215ENST00000544800 FOXD1Q16676 465 aa15.39■□□□□ 0.05
CIT-215ENST00000544800 OSCARQ8IYS5 282 aa15.36■□□□□ 0.05
CIT-215ENST00000544800 ILDR1Q86SU0 546 aaPredicted RBP15.31■□□□□ 0.04
CIT-215ENST00000544800 TRHP20396 242 aaPredicted RBP15.28■□□□□ 0.04
CIT-215ENST00000544800 THOC2Q8NI27 1593 aaKnown RBP15.27■□□□□ 0.03
CIT-215ENST00000544800 NESP48681 1621 aa15.24■□□□□ 0.03
CIT-215ENST00000544800 NCAPD3P42695 1498 aa15.17■□□□□ 0.02
CIT-215ENST00000544800 BAZ1AQ9NRL2 1556 aaPredicted RBP15.12■□□□□ 0.01
CIT-215ENST00000544800 RIMBP3CA6NJZ7 1639 aa15.1■□□□□ 0.01
CIT-215ENST00000544800 RIMBP3BA6NNM3 1639 aa15.1■□□□□ 0.01
CIT-215ENST00000544800 RIMBP3Q9UFD9 1639 aa15.1■□□□□ 0.01
CIT-215ENST00000544800 DCAF1Q9Y4B6 1507 aa15.09■□□□□ 0.01
CIT-215ENST00000544800 SMARCA2P51531 1590 aa15.07■□□□□ 0
CIT-215ENST00000544800 CYB5RLQ6IPT4 315 aa15.05■□□□□ -0
CIT-215ENST00000544800 PDS5BQ9NTI5 1447 aa14.99□□□□□ -0.01
CIT-215ENST00000544800 ARHGEF11O15085 1522 aa14.97□□□□□ -0.01
CIT-215ENST00000544800 LAMC3Q9Y6N6 1575 aa14.94□□□□□ -0.02
CIT-215ENST00000544800 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
CIT-215ENST00000544800 ZCCHC6Q5VYS8 1495 aaKnown RBP14.9□□□□□ -0.02
CIT-215ENST00000544800 KIF21AQ7Z4S6 1674 aa14.9□□□□□ -0.02
CIT-215ENST00000544800 MRC2Q9UBG0 1479 aa14.87□□□□□ -0.03
CIT-215ENST00000544800 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
CIT-215ENST00000544800 WDR62O43379 1518 aa14.83□□□□□ -0.04
CIT-215ENST00000544800 ARAP1Q96P48 1450 aa14.75□□□□□ -0.05
CIT-215ENST00000544800 BAZ1BQ9UIG0 1483 aaKnown RBP14.69□□□□□ -0.06
CIT-215ENST00000544800 CADPSQ9ULU8 1353 aa14.66□□□□□ -0.06
CIT-215ENST00000544800 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
CIT-215ENST00000544800 CEP164Q9UPV0 1460 aa14.56□□□□□ -0.08
CIT-215ENST00000544800 PLPPR3Q6T4P5 718 aa14.54□□□□□ -0.08
CIT-215ENST00000544800 KDM4FA0A1W2PPD8 638 aa14.51□□□□□ -0.09
CIT-215ENST00000544800 SMARCA4P51532 1647 aa14.51□□□□□ -0.09
CIT-215ENST00000544800 FBXO41Q8TF61 875 aa14.49□□□□□ -0.09
CIT-215ENST00000544800 FANCD2Q9BXW9 1451 aa14.44□□□□□ -0.1
CIT-215ENST00000544800 SOCS7O14512 581 aa14.43□□□□□ -0.1
CIT-215ENST00000544800 LMTK3Q96Q04 1460 aa14.43□□□□□ -0.1
CIT-215ENST00000544800 PEG3Q9GZU2 1588 aa14.41□□□□□ -0.1
CIT-215ENST00000544800 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
CIT-215ENST00000544800 PIAS4Q8N2W9 510 aaPredicted RBP14.4□□□□□ -0.1
CIT-215ENST00000544800 PPP6R1Q9UPN7 881 aa14.38□□□□□ -0.11
CIT-215ENST00000544800 URB2Q14146 1524 aaKnown RBP14.37□□□□□ -0.11
CIT-215ENST00000544800 FBLN2P98095 1184 aa14.37□□□□□ -0.11
CIT-215ENST00000544800 MSH5O43196 834 aa14.36□□□□□ -0.11
CIT-215ENST00000544800 ADRA2BP18089 450 aa14.35□□□□□ -0.11
CIT-215ENST00000544800 IFT140Q96RY7 1462 aa14.35□□□□□ -0.11
CIT-215ENST00000544800 ERCC6L2Q5T890 1561 aa14.32□□□□□ -0.12
CIT-215ENST00000544800 CHD1O14646 1710 aa14.27□□□□□ -0.12
CIT-215ENST00000544800 ILDR2Q71H61 639 aa14.25□□□□□ -0.13
CIT-215ENST00000544800 CFTRP13569 1480 aa14.2□□□□□ -0.14
CIT-215ENST00000544800 POTEDQ86YR6 584 aa14.19□□□□□ -0.14
CIT-215ENST00000544800 EIF4G3O43432 1585 aaKnown RBP14.18□□□□□ -0.14
CIT-215ENST00000544800 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
CIT-215ENST00000544800 HECW2Q9P2P5 1572 aa14.17□□□□□ -0.14
CIT-215ENST00000544800 CLASP1Q7Z460 1538 aa14.16□□□□□ -0.14
CIT-215ENST00000544800 AQRO60306 1485 aaKnown RBP eCLIP14.16□□□□□ -0.144e-8■■■■□ 23.5
CIT-215ENST00000544800 DISP3Q9P2K9 1392 aa14.11□□□□□ -0.15
CIT-215ENST00000544800 MROH2BQ7Z745 1585 aa14.11□□□□□ -0.15
CIT-215ENST00000544800 SYNJ2O15056 1496 aa14.09□□□□□ -0.15
CIT-215ENST00000544800 CHMP7Q8WUX9 453 aaPredicted RBP14.08□□□□□ -0.16
CIT-215ENST00000544800 SYNJ1O43426 1573 aa14.06□□□□□ -0.16
CIT-215ENST00000544800 FAM69CQ0P6D2 419 aa14.04□□□□□ -0.16
CIT-215ENST00000544800 KIF13AQ9H1H9 1805 aa14.04□□□□□ -0.16
CIT-215ENST00000544800 TOPBP1Q92547 1522 aa14.01□□□□□ -0.17
CIT-215ENST00000544800 ADGRL1O94910 1474 aa14.01□□□□□ -0.17
CIT-215ENST00000544800 KDM6BO15054 1643 aa13.98□□□□□ -0.17
CIT-215ENST00000544800 ABCC8Q09428 1581 aa13.96□□□□□ -0.17
CIT-215ENST00000544800 TARBP1Q13395 1621 aaKnown RBP13.94□□□□□ -0.18
CIT-215ENST00000544800 ABCC10Q5T3U5 1492 aa13.93□□□□□ -0.18
CIT-215ENST00000544800 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
CIT-215ENST00000544800 TDRD9Q8NDG6 1382 aaKnown RBP13.9□□□□□ -0.18
CIT-215ENST00000544800 MAGI1Q96QZ7 1491 aaPredicted RBP13.87□□□□□ -0.19
CIT-215ENST00000544800 NPM1P06748 294 aaKnown RBP eCLIP13.83□□□□□ -0.2
CIT-215ENST00000544800 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
CIT-215ENST00000544800 WIZO95785 1651 aa13.81□□□□□ -0.2
CIT-215ENST00000544800 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
CIT-215ENST00000544800 DIP2BQ9P265 1576 aa13.78□□□□□ -0.2
CIT-215ENST00000544800 SOGA1O94964 1423 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms