RNA–Protein interactions for RNA: ENST00000542862.1

ERVFRD-1-202, Transcript of endogenous retrovirus group FRD member 1, envelope, humanhuman

APPRIS P1 BASIC

Gene ERVFRD-1, Length 3,184 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERVFRD-1-202ENST00000542862 NISCHQ9Y2I1 1504 aa16.64■□□□□ 0.25
ERVFRD-1-202ENST00000542862 SHROOM4Q9ULL8 1493 aa14.41□□□□□ -0.1
ERVFRD-1-202ENST00000542862 DCAF8L2P0C7V8 631 aa14.18□□□□□ -0.14
ERVFRD-1-202ENST00000542862 SUPT5HO00267 1087 aaKnown RBP14.07□□□□□ -0.16
ERVFRD-1-202ENST00000542862 CCDC180Q9P1Z9 1646 aa14.04□□□□□ -0.16
ERVFRD-1-202ENST00000542862 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.17
ERVFRD-1-202ENST00000542862 CHIC1Q5VXU3 224 aa13.69□□□□□ -0.22
ERVFRD-1-202ENST00000542862 AEBP2Q6ZN18 517 aaPredicted RBP13.61□□□□□ -0.23
ERVFRD-1-202ENST00000542862 DCAF1Q9Y4B6 1507 aa13.5□□□□□ -0.25
ERVFRD-1-202ENST00000542862 MYO15BQ96JP2 1530 aa13.44□□□□□ -0.26
ERVFRD-1-202ENST00000542862 ABCC9O60706 1549 aa13.42□□□□□ -0.26
ERVFRD-1-202ENST00000542862 SCRIBQ14160 1630 aa13.38□□□□□ -0.27
ERVFRD-1-202ENST00000542862 LOC105371045A0A1W2PR82 267 aa13.24□□□□□ -0.29
ERVFRD-1-202ENST00000542862 RSF1Q96T23 1441 aaPredicted RBP13.19□□□□□ -0.3
ERVFRD-1-202ENST00000542862 CECR2Q9BXF3 1484 aa13.12□□□□□ -0.31
ERVFRD-1-202ENST00000542862 NACADO15069 1562 aa13.07□□□□□ -0.32
ERVFRD-1-202ENST00000542862 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
ERVFRD-1-202ENST00000542862 PCGF6Q9BYE7 350 aa13.07□□□□□ -0.32
ERVFRD-1-202ENST00000542862 FAM9AQ8IZU1 332 aaPredicted RBP13.06□□□□□ -0.32
ERVFRD-1-202ENST00000542862 RB1CC1Q8TDY2 1594 aa13.04□□□□□ -0.32
ERVFRD-1-202ENST00000542862 TRIM41Q8WV44 630 aa13.01□□□□□ -0.33
ERVFRD-1-202ENST00000542862 MROH2BQ7Z745 1585 aa13.01□□□□□ -0.33
ERVFRD-1-202ENST00000542862 WIZO95785 1651 aa12.93□□□□□ -0.34
ERVFRD-1-202ENST00000542862 PABPN1Q86U42 306 aaKnown RBP eCLIP12.92□□□□□ -0.34
ERVFRD-1-202ENST00000542862 HRCP23327 699 aa12.86□□□□□ -0.35
ERVFRD-1-202ENST00000542862 PPARGC1BQ86YN6 1023 aaKnown RBP12.81□□□□□ -0.36
ERVFRD-1-202ENST00000542862 UNC13AQ9UPW8 1703 aa12.75□□□□□ -0.37
ERVFRD-1-202ENST00000542862 BAZ1AQ9NRL2 1556 aaPredicted RBP12.75□□□□□ -0.37
ERVFRD-1-202ENST00000542862 TRIM26Q12899 539 aaPredicted RBP12.7□□□□□ -0.38
ERVFRD-1-202ENST00000542862 SMARCA4P51532 1647 aa12.68□□□□□ -0.38
ERVFRD-1-202ENST00000542862 CCDC88BA6NC98 1476 aa12.67□□□□□ -0.38
ERVFRD-1-202ENST00000542862 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
ERVFRD-1-202ENST00000542862 BICRAQ9NZM4 1560 aa12.64□□□□□ -0.39
ERVFRD-1-202ENST00000542862 TOP2AP11388 1531 aaKnown RBP12.62□□□□□ -0.39
ERVFRD-1-202ENST00000542862 SMARCA2P51531 1590 aa12.59□□□□□ -0.39
ERVFRD-1-202ENST00000542862 EIF4G1Q04637 1599 aaKnown RBP12.58□□□□□ -0.4
ERVFRD-1-202ENST00000542862 TTBK1Q5TCY1 1321 aaPredicted RBP12.58□□□□□ -0.4
ERVFRD-1-202ENST00000542862 SOGA1O94964 1423 aa12.53□□□□□ -0.4
ERVFRD-1-202ENST00000542862 RUSC2Q8N2Y8 1516 aa12.51□□□□□ -0.41
ERVFRD-1-202ENST00000542862 UBTFP17480 764 aaKnown RBP12.45□□□□□ -0.42
ERVFRD-1-202ENST00000542862 ATAD2BQ9ULI0 1458 aa12.43□□□□□ -0.42
ERVFRD-1-202ENST00000542862 CSRNP3Q8WYN3 585 aa12.43□□□□□ -0.42
ERVFRD-1-202ENST00000542862 RANGAP1P46060 587 aaPredicted RBP12.4□□□□□ -0.42
ERVFRD-1-202ENST00000542862 BAZ1BQ9UIG0 1483 aaKnown RBP12.39□□□□□ -0.43
ERVFRD-1-202ENST00000542862 WRNQ14191 1432 aaPredicted RBP eCLIP12.39□□□□□ -0.43
ERVFRD-1-202ENST00000542862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.37□□□□□ -0.43
ERVFRD-1-202ENST00000542862 CEP162Q5TB80 1403 aa12.35□□□□□ -0.43
ERVFRD-1-202ENST00000542862 PEG3Q9GZU2 1588 aa12.34□□□□□ -0.43
ERVFRD-1-202ENST00000542862 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
ERVFRD-1-202ENST00000542862 TNIKQ9UKE5 1360 aa12.29□□□□□ -0.44
ERVFRD-1-202ENST00000542862 ZEB1P37275 1124 aaPredicted RBP12.26□□□□□ -0.45
ERVFRD-1-202ENST00000542862 CCER1Q8TC90 406 aaPredicted RBP12.26□□□□□ -0.45
ERVFRD-1-202ENST00000542862 EEA1Q15075 1411 aa12.23□□□□□ -0.45
ERVFRD-1-202ENST00000542862 GOLGA3Q08378 1498 aa12.23□□□□□ -0.45
ERVFRD-1-202ENST00000542862 RAPGEF2Q9Y4G8 1499 aa12.19□□□□□ -0.46
ERVFRD-1-202ENST00000542862 PHF23Q9BUL5 403 aaPredicted RBP12.18□□□□□ -0.46
ERVFRD-1-202ENST00000542862 HNRNPUL2Q1KMD3 747 aaKnown RBP12.16□□□□□ -0.46
ERVFRD-1-202ENST00000542862 NCAPD3P42695 1498 aa12.16□□□□□ -0.46
ERVFRD-1-202ENST00000542862 CEP164Q9UPV0 1460 aa12.16□□□□□ -0.46
ERVFRD-1-202ENST00000542862 CLIP1P30622 1438 aa12.15□□□□□ -0.46
ERVFRD-1-202ENST00000542862 TOP2BQ02880 1626 aa12.1□□□□□ -0.47
ERVFRD-1-202ENST00000542862 CUX1P39880 1505 aa12.09□□□□□ -0.47
ERVFRD-1-202ENST00000542862 KIF21BO75037 1637 aa12.08□□□□□ -0.48
ERVFRD-1-202ENST00000542862 HMGXB3Q12766 1538 aa12.08□□□□□ -0.48
ERVFRD-1-202ENST00000542862 APLP2Q06481 763 aa12.08□□□□□ -0.48
ERVFRD-1-202ENST00000542862 CFTRP13569 1480 aa12.05□□□□□ -0.48
ERVFRD-1-202ENST00000542862 VPS8Q8N3P4 1428 aa12.03□□□□□ -0.48
ERVFRD-1-202ENST00000542862 BIVM-ERCC5R4GMW8 1640 aa12.03□□□□□ -0.48
ERVFRD-1-202ENST00000542862 KANK4Q5T7N3 995 aaPredicted RBP12.02□□□□□ -0.49
ERVFRD-1-202ENST00000542862 PRXQ9BXM0 1461 aa12□□□□□ -0.49
ERVFRD-1-202ENST00000542862 DNAJC5BQ9UF47 199 aa11.99□□□□□ -0.49
ERVFRD-1-202ENST00000542862 KIF27Q86VH2 1401 aa11.99□□□□□ -0.49
ERVFRD-1-202ENST00000542862 CADPSQ9ULU8 1353 aa11.98□□□□□ -0.49
ERVFRD-1-202ENST00000542862 CC2D2AQ9P2K1 1620 aa11.97□□□□□ -0.49
ERVFRD-1-202ENST00000542862 CUX2O14529 1486 aa11.96□□□□□ -0.5
ERVFRD-1-202ENST00000542862 P3H3Q8IVL6 736 aa11.95□□□□□ -0.5
ERVFRD-1-202ENST00000542862 ARAP1Q96P48 1450 aa11.95□□□□□ -0.5
ERVFRD-1-202ENST00000542862 ITGAEP38570 1179 aa11.93□□□□□ -0.5
ERVFRD-1-202ENST00000542862 NESP48681 1621 aa11.93□□□□□ -0.5
ERVFRD-1-202ENST00000542862 IGF1RP08069 1367 aa11.93□□□□□ -0.5
ERVFRD-1-202ENST00000542862 DIEXFQ68CQ4 756 aaKnown RBP11.92□□□□□ -0.5
ERVFRD-1-202ENST00000542862 FGD5Q6ZNL6 1462 aa11.91□□□□□ -0.5
ERVFRD-1-202ENST00000542862 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
ERVFRD-1-202ENST00000542862 ATP1B4Q9UN42 357 aaPredicted RBP11.89□□□□□ -0.51
ERVFRD-1-202ENST00000542862 RAD54L2Q9Y4B4 1467 aa11.88□□□□□ -0.51
ERVFRD-1-202ENST00000542862 CARMIL1Q5VZK9 1371 aa11.87□□□□□ -0.51
ERVFRD-1-202ENST00000542862 ARHGAP35Q9NRY4 1499 aa11.87□□□□□ -0.51
ERVFRD-1-202ENST00000542862 FANCD2Q9BXW9 1451 aa11.87□□□□□ -0.51
ERVFRD-1-202ENST00000542862 SCAF1Q9H7N4 1312 aaKnown RBP11.85□□□□□ -0.51
ERVFRD-1-202ENST00000542862 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.51
ERVFRD-1-202ENST00000542862 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
ERVFRD-1-202ENST00000542862 NEUROD1Q13562 356 aa11.79□□□□□ -0.52
ERVFRD-1-202ENST00000542862 TDRD9Q8NDG6 1382 aaKnown RBP11.77□□□□□ -0.52
ERVFRD-1-202ENST00000542862 YTHDC1Q96MU7 727 aaKnown RBP11.77□□□□□ -0.52
ERVFRD-1-202ENST00000542862 POLA1P09884 1462 aaPredicted RBP11.77□□□□□ -0.53
ERVFRD-1-202ENST00000542862 TOPBP1Q92547 1522 aa11.76□□□□□ -0.53
ERVFRD-1-202ENST00000542862 DHX57Q6P158 1386 aaKnown RBP11.75□□□□□ -0.53
ERVFRD-1-202ENST00000542862 FAM50AQ14320 339 aaKnown RBP11.74□□□□□ -0.53
ERVFRD-1-202ENST00000542862 FHOD3Q2V2M9 1422 aa11.74□□□□□ -0.53
ERVFRD-1-202ENST00000542862 MIER1Q8N108 512 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms