RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
DDX55-208ENST00000541259 CHIC1Q5VXU3 224 aa22.42■■□□□ 1.18
DDX55-208ENST00000541259 NISCHQ9Y2I1 1504 aa22.01■■□□□ 1.11
DDX55-208ENST00000541259 PHF23Q9BUL5 403 aaPredicted RBP19.67■□□□□ 0.74
DDX55-208ENST00000541259 CCDC180Q9P1Z9 1646 aa19.38■□□□□ 0.69
DDX55-208ENST00000541259 SENP3Q9H4L4 574 aaPredicted RBP19.33■□□□□ 0.68
DDX55-208ENST00000541259 ABCC9O60706 1549 aa18.66■□□□□ 0.58
DDX55-208ENST00000541259 ZCCHC6Q5VYS8 1495 aaKnown RBP18.39■□□□□ 0.54
DDX55-208ENST00000541259 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
DDX55-208ENST00000541259 DCAF8L2P0C7V8 631 aa18.29■□□□□ 0.52
DDX55-208ENST00000541259 DCAF1Q9Y4B6 1507 aa18.18■□□□□ 0.5
DDX55-208ENST00000541259 NACADO15069 1562 aa18.11■□□□□ 0.49
DDX55-208ENST00000541259 MYO15BQ96JP2 1530 aa18.08■□□□□ 0.49
DDX55-208ENST00000541259 RB1CC1Q8TDY2 1594 aa18.05■□□□□ 0.48
DDX55-208ENST00000541259 FOXD1Q16676 465 aa17.85■□□□□ 0.45
DDX55-208ENST00000541259 UNC13AQ9UPW8 1703 aa17.79■□□□□ 0.44
DDX55-208ENST00000541259 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
DDX55-208ENST00000541259 SHROOM4Q9ULL8 1493 aa17.69■□□□□ 0.42
DDX55-208ENST00000541259 BICRAQ9NZM4 1560 aa17.55■□□□□ 0.4
DDX55-208ENST00000541259 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
DDX55-208ENST00000541259 ADRA2BP18089 450 aa17.34■□□□□ 0.37
DDX55-208ENST00000541259 PPP6R1Q9UPN7 881 aa17.29■□□□□ 0.36
DDX55-208ENST00000541259 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
DDX55-208ENST00000541259 EIF4G1Q04637 1599 aaKnown RBP17.03■□□□□ 0.32
DDX55-208ENST00000541259 SMARCA4P51532 1647 aa17.01■□□□□ 0.31
DDX55-208ENST00000541259 BAZ1AQ9NRL2 1556 aaPredicted RBP17.01■□□□□ 0.31
DDX55-208ENST00000541259 MROH2BQ7Z745 1585 aa17■□□□□ 0.31
DDX55-208ENST00000541259 PIAS4Q8N2W9 510 aaPredicted RBP16.95■□□□□ 0.3
DDX55-208ENST00000541259 RSF1Q96T23 1441 aaPredicted RBP16.92■□□□□ 0.3
DDX55-208ENST00000541259 CC2D2AQ9P2K1 1620 aa16.89■□□□□ 0.29
DDX55-208ENST00000541259 WIZO95785 1651 aa16.88■□□□□ 0.29
DDX55-208ENST00000541259 DNAJC5BQ9UF47 199 aa16.83■□□□□ 0.28
DDX55-208ENST00000541259 SUPT5HO00267 1087 aaKnown RBP16.82■□□□□ 0.28
DDX55-208ENST00000541259 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
DDX55-208ENST00000541259 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
DDX55-208ENST00000541259 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
DDX55-208ENST00000541259 NCAPD3P42695 1498 aa16.71■□□□□ 0.27
DDX55-208ENST00000541259 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
DDX55-208ENST00000541259 HMGXB3Q12766 1538 aa16.65■□□□□ 0.26
DDX55-208ENST00000541259 TOP2AP11388 1531 aaKnown RBP16.64■□□□□ 0.25
DDX55-208ENST00000541259 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
DDX55-208ENST00000541259 MSH5O43196 834 aa16.46■□□□□ 0.23
DDX55-208ENST00000541259 NESP48681 1621 aa16.28■□□□□ 0.2
DDX55-208ENST00000541259 CADPSQ9ULU8 1353 aa16.25■□□□□ 0.19
DDX55-208ENST00000541259 CFTRP13569 1480 aa16.23■□□□□ 0.19
DDX55-208ENST00000541259 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
DDX55-208ENST00000541259 LAMC3Q9Y6N6 1575 aa16.21■□□□□ 0.19
DDX55-208ENST00000541259 PPP4R3CPQ6ZMV5 832 aa16.18■□□□□ 0.18
DDX55-208ENST00000541259 KIF21AQ7Z4S6 1674 aa16.12■□□□□ 0.17
DDX55-208ENST00000541259 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.16
DDX55-208ENST00000541259 PDS5BQ9NTI5 1447 aa16.07■□□□□ 0.16
DDX55-208ENST00000541259 ABCC8Q09428 1581 aa16.03■□□□□ 0.16
DDX55-208ENST00000541259 CEP164Q9UPV0 1460 aa16.01■□□□□ 0.15
DDX55-208ENST00000541259 ERCC6Q03468 1493 aa16■□□□□ 0.15
DDX55-208ENST00000541259 KCNA4P22459 653 aa16■□□□□ 0.15
DDX55-208ENST00000541259 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
DDX55-208ENST00000541259 URB2Q14146 1524 aaKnown RBP15.93■□□□□ 0.14
DDX55-208ENST00000541259 CUX1P39880 1505 aa15.92■□□□□ 0.14
DDX55-208ENST00000541259 WRNQ14191 1432 aaPredicted RBP eCLIP15.92■□□□□ 0.14
DDX55-208ENST00000541259 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
DDX55-208ENST00000541259 THOC2Q8NI27 1593 aaKnown RBP15.92■□□□□ 0.14
DDX55-208ENST00000541259 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
DDX55-208ENST00000541259 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
DDX55-208ENST00000541259 DNMBPQ6XZF7 1577 aa15.88■□□□□ 0.13
DDX55-208ENST00000541259 TOPBP1Q92547 1522 aa15.88■□□□□ 0.13
DDX55-208ENST00000541259 BIVM-ERCC5R4GMW8 1640 aa15.87■□□□□ 0.13
DDX55-208ENST00000541259 TOP2BQ02880 1626 aa15.86■□□□□ 0.13
DDX55-208ENST00000541259 WDR62O43379 1518 aa15.84■□□□□ 0.13
DDX55-208ENST00000541259 TRIM41Q8WV44 630 aa15.83■□□□□ 0.12
DDX55-208ENST00000541259 FGD5Q6ZNL6 1462 aa15.79■□□□□ 0.12
DDX55-208ENST00000541259 POLA1P09884 1462 aaPredicted RBP15.76■□□□□ 0.11
DDX55-208ENST00000541259 CUX2O14529 1486 aa15.73■□□□□ 0.11
DDX55-208ENST00000541259 RAD54L2Q9Y4B4 1467 aa15.73■□□□□ 0.11
DDX55-208ENST00000541259 SOGA1O94964 1423 aa15.7■□□□□ 0.1
DDX55-208ENST00000541259 TARBP1Q13395 1621 aaKnown RBP15.7■□□□□ 0.1
DDX55-208ENST00000541259 CNKSR2Q8WXI2 1034 aa15.7■□□□□ 0.1
DDX55-208ENST00000541259 WDR97A6NE52 1622 aa15.67■□□□□ 0.1
DDX55-208ENST00000541259 MAPK8IP2Q13387 824 aaPredicted RBP15.65■□□□□ 0.1
DDX55-208ENST00000541259 IFT140Q96RY7 1462 aa15.65■□□□□ 0.1
DDX55-208ENST00000541259 ABCA10Q8WWZ4 1543 aa15.63■□□□□ 0.09
DDX55-208ENST00000541259 RUSC2Q8N2Y8 1516 aa15.62■□□□□ 0.09
DDX55-208ENST00000541259 ZNF608Q9ULD9 1512 aaPredicted RBP15.61■□□□□ 0.09
DDX55-208ENST00000541259 TDRD9Q8NDG6 1382 aaKnown RBP15.6■□□□□ 0.09
DDX55-208ENST00000541259 AQRO60306 1485 aaKnown RBP eCLIP15.57■□□□□ 0.082e-6■■■□□ 15
DDX55-208ENST00000541259 FAM9AQ8IZU1 332 aaPredicted RBP15.56■□□□□ 0.08
DDX55-208ENST00000541259 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
DDX55-208ENST00000541259 EIF4G3O43432 1585 aaKnown RBP15.55■□□□□ 0.08
DDX55-208ENST00000541259 NPM3O75607 178 aaKnown RBP15.55■□□□□ 0.08
DDX55-208ENST00000541259 KIF27Q86VH2 1401 aa15.54■□□□□ 0.08
DDX55-208ENST00000541259 PBRM1Q86U86 1689 aa15.53■□□□□ 0.08
DDX55-208ENST00000541259 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.08
DDX55-208ENST00000541259 IGF1RP08069 1367 aa15.47■□□□□ 0.07
DDX55-208ENST00000541259 EEA1Q15075 1411 aa15.46■□□□□ 0.07
DDX55-208ENST00000541259 CSRNP3Q8WYN3 585 aa15.45■□□□□ 0.06
DDX55-208ENST00000541259 GRIN2BQ13224 1484 aa15.45■□□□□ 0.06
DDX55-208ENST00000541259 ERICH3Q5RHP9 1530 aa15.44■□□□□ 0.06
DDX55-208ENST00000541259 DMRT2Q9Y5R5 561 aa15.42■□□□□ 0.06
DDX55-208ENST00000541259 SNAPC4Q5SXM2 1469 aa15.4■□□□□ 0.06
DDX55-208ENST00000541259 CUL7Q14999 1698 aa15.39■□□□□ 0.05
DDX55-208ENST00000541259 CARMIL1Q5VZK9 1371 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms