RNA–Protein interactions for RNA: ENST00000540815.2

LGR5-203, Transcript of leucine rich repeat containing G protein-coupled receptor 5, humanhuman

TSL 1 (best) BASIC

Gene LGR5, Length 2,800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LGR5-203ENST00000540815 NISCHQ9Y2I1 1504 aa24.31■■□□□ 1.48
LGR5-203ENST00000540815 CCDC180Q9P1Z9 1646 aa20.95■□□□□ 0.94
LGR5-203ENST00000540815 ZCCHC6Q5VYS8 1495 aaKnown RBP20.53■□□□□ 0.88
LGR5-203ENST00000540815 SHROOM4Q9ULL8 1493 aa20.33■□□□□ 0.85
LGR5-203ENST00000540815 DCAF1Q9Y4B6 1507 aa20.08■□□□□ 0.8
LGR5-203ENST00000540815 DCAF8L2P0C7V8 631 aa20.01■□□□□ 0.79
LGR5-203ENST00000540815 SUPT5HO00267 1087 aaKnown RBP19.75■□□□□ 0.75
LGR5-203ENST00000540815 MYO15BQ96JP2 1530 aa19.63■□□□□ 0.73
LGR5-203ENST00000540815 ABCC9O60706 1549 aa19.48■□□□□ 0.71
LGR5-203ENST00000540815 SCRIBQ14160 1630 aa19.42■□□□□ 0.7
LGR5-203ENST00000540815 NACADO15069 1562 aa19.38■□□□□ 0.69
LGR5-203ENST00000540815 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
LGR5-203ENST00000540815 RB1CC1Q8TDY2 1594 aa19.09■□□□□ 0.65
LGR5-203ENST00000540815 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
LGR5-203ENST00000540815 CECR2Q9BXF3 1484 aa18.96■□□□□ 0.63
LGR5-203ENST00000540815 MROH2BQ7Z745 1585 aa18.87■□□□□ 0.61
LGR5-203ENST00000540815 UNC13AQ9UPW8 1703 aa18.84■□□□□ 0.61
LGR5-203ENST00000540815 WIZO95785 1651 aa18.75■□□□□ 0.59
LGR5-203ENST00000540815 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
LGR5-203ENST00000540815 BICRAQ9NZM4 1560 aa18.62■□□□□ 0.57
LGR5-203ENST00000540815 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
LGR5-203ENST00000540815 PPARGC1BQ86YN6 1023 aaKnown RBP18.59■□□□□ 0.57
LGR5-203ENST00000540815 HRCP23327 699 aa18.52■□□□□ 0.56
LGR5-203ENST00000540815 LOC105371045A0A1W2PR82 267 aa18.51■□□□□ 0.55
LGR5-203ENST00000540815 PABPN1Q86U42 306 aaKnown RBP eCLIP18.51■□□□□ 0.55
LGR5-203ENST00000540815 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
LGR5-203ENST00000540815 TRIM41Q8WV44 630 aa18.47■□□□□ 0.55
LGR5-203ENST00000540815 EIF4G1Q04637 1599 aaKnown RBP18.45■□□□□ 0.54
LGR5-203ENST00000540815 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
LGR5-203ENST00000540815 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
LGR5-203ENST00000540815 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
LGR5-203ENST00000540815 PEG3Q9GZU2 1588 aa18.33■□□□□ 0.52
LGR5-203ENST00000540815 FAM9AQ8IZU1 332 aaPredicted RBP18.25■□□□□ 0.51
LGR5-203ENST00000540815 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
LGR5-203ENST00000540815 ATAD2BQ9ULI0 1458 aa18.17■□□□□ 0.5
LGR5-203ENST00000540815 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
LGR5-203ENST00000540815 EHMT2Q96KQ7 1210 aa18.05■□□□□ 0.48
LGR5-203ENST00000540815 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
LGR5-203ENST00000540815 SOGA1O94964 1423 aa17.94■□□□□ 0.46
LGR5-203ENST00000540815 WRNQ14191 1432 aaPredicted RBP eCLIP17.92■□□□□ 0.462e-10■■■■■ 91.9
LGR5-203ENST00000540815 EEA1Q15075 1411 aa17.92■□□□□ 0.46
LGR5-203ENST00000540815 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
LGR5-203ENST00000540815 RUSC2Q8N2Y8 1516 aa17.89■□□□□ 0.45
LGR5-203ENST00000540815 SYNJ1O43426 1573 aa17.88■□□□□ 0.45
LGR5-203ENST00000540815 NCAPD3P42695 1498 aa17.88■□□□□ 0.45
LGR5-203ENST00000540815 SCAF1Q9H7N4 1312 aaKnown RBP17.83■□□□□ 0.44
LGR5-203ENST00000540815 PELP1Q8IZL8 1130 aaKnown RBP17.8■□□□□ 0.44
LGR5-203ENST00000540815 CSRNP3Q8WYN3 585 aa17.79■□□□□ 0.44
LGR5-203ENST00000540815 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
LGR5-203ENST00000540815 TOP2BQ02880 1626 aa17.73■□□□□ 0.43
LGR5-203ENST00000540815 GOLGA3Q08378 1498 aa17.72■□□□□ 0.43
LGR5-203ENST00000540815 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
LGR5-203ENST00000540815 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
LGR5-203ENST00000540815 KIF21BO75037 1637 aa17.69■□□□□ 0.42
LGR5-203ENST00000540815 CEP164Q9UPV0 1460 aa17.66■□□□□ 0.42
LGR5-203ENST00000540815 CFTRP13569 1480 aa17.65■□□□□ 0.42
LGR5-203ENST00000540815 PRDM2Q13029 1718 aa17.62■□□□□ 0.41
LGR5-203ENST00000540815 UBTFP17480 764 aaKnown RBP17.61■□□□□ 0.41
LGR5-203ENST00000540815 CUX1P39880 1505 aa17.6■□□□□ 0.41
LGR5-203ENST00000540815 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
LGR5-203ENST00000540815 ZEB1P37275 1124 aaPredicted RBP17.54■□□□□ 0.4
LGR5-203ENST00000540815 RAPGEF2Q9Y4G8 1499 aa17.53■□□□□ 0.4
LGR5-203ENST00000540815 CADPSQ9ULU8 1353 aa17.48■□□□□ 0.39
LGR5-203ENST00000540815 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
LGR5-203ENST00000540815 CLIP1P30622 1438 aa17.45■□□□□ 0.38
LGR5-203ENST00000540815 PRXQ9BXM0 1461 aa17.44■□□□□ 0.38
LGR5-203ENST00000540815 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
LGR5-203ENST00000540815 TTBK1Q5TCY1 1321 aaPredicted RBP17.39■□□□□ 0.37
LGR5-203ENST00000540815 VPS8Q8N3P4 1428 aa17.37■□□□□ 0.37
LGR5-203ENST00000540815 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
LGR5-203ENST00000540815 FGD5Q6ZNL6 1462 aa17.31■□□□□ 0.36
LGR5-203ENST00000540815 NESP48681 1621 aa17.3■□□□□ 0.36
LGR5-203ENST00000540815 NEUROD1Q13562 356 aa17.29■□□□□ 0.36
LGR5-203ENST00000540815 RANGAP1P46060 587 aaPredicted RBP17.28■□□□□ 0.36
LGR5-203ENST00000540815 CUX2O14529 1486 aa17.28■□□□□ 0.36
LGR5-203ENST00000540815 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
LGR5-203ENST00000540815 IGF1RP08069 1367 aa17.24■□□□□ 0.35
LGR5-203ENST00000540815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.23■□□□□ 0.35
LGR5-203ENST00000540815 DNMBPQ6XZF7 1577 aa17.23■□□□□ 0.35
LGR5-203ENST00000540815 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
LGR5-203ENST00000540815 GTF3C3Q9Y5Q9 886 aa17.21■□□□□ 0.35
LGR5-203ENST00000540815 CCER1Q8TC90 406 aaPredicted RBP17.2■□□□□ 0.34
LGR5-203ENST00000540815 LAMC3Q9Y6N6 1575 aa17.2■□□□□ 0.34
LGR5-203ENST00000540815 APLP2Q06481 763 aa17.2■□□□□ 0.34
LGR5-203ENST00000540815 TOPBP1Q92547 1522 aa17.19■□□□□ 0.34
LGR5-203ENST00000540815 ACIN1Q9UKV3 1341 aaKnown RBP17.17■□□□□ 0.34
LGR5-203ENST00000540815 RAD54L2Q9Y4B4 1467 aa17.16■□□□□ 0.34
LGR5-203ENST00000540815 POLA1P09884 1462 aaPredicted RBP17.15■□□□□ 0.34
LGR5-203ENST00000540815 ARHGAP35Q9NRY4 1499 aa17.14■□□□□ 0.33
LGR5-203ENST00000540815 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
LGR5-203ENST00000540815 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
LGR5-203ENST00000540815 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
LGR5-203ENST00000540815 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
LGR5-203ENST00000540815 CUL7Q14999 1698 aa17.05■□□□□ 0.32
LGR5-203ENST00000540815 KANK4Q5T7N3 995 aaPredicted RBP17.04■□□□□ 0.32
LGR5-203ENST00000540815 KIF21AQ7Z4S6 1674 aa17.03■□□□□ 0.32
LGR5-203ENST00000540815 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
LGR5-203ENST00000540815 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.31
LGR5-203ENST00000540815 MYT1Q01538 1121 aa17■□□□□ 0.31
LGR5-203ENST00000540815 MAP3K1Q13233 1512 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms