RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 NISCHQ9Y2I1 1504 aa29.26■■■□□ 2.27
LMO3-223ENST00000540590 AEBP2Q6ZN18 517 aaPredicted RBP29.06■■■□□ 2.24
LMO3-223ENST00000540590 CHIC1Q5VXU3 224 aa27.31■■□□□ 1.96
LMO3-223ENST00000540590 CCDC180Q9P1Z9 1646 aa25.79■■□□□ 1.72
LMO3-223ENST00000540590 SENP3Q9H4L4 574 aaPredicted RBP24.95■■□□□ 1.58
LMO3-223ENST00000540590 ABCC9O60706 1549 aa24.62■■□□□ 1.53
LMO3-223ENST00000540590 PHF23Q9BUL5 403 aaPredicted RBP24.53■■□□□ 1.52
LMO3-223ENST00000540590 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
LMO3-223ENST00000540590 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
LMO3-223ENST00000540590 MYO15BQ96JP2 1530 aa24.2■■□□□ 1.47
LMO3-223ENST00000540590 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
LMO3-223ENST00000540590 NACADO15069 1562 aa24.06■■□□□ 1.44
LMO3-223ENST00000540590 RB1CC1Q8TDY2 1594 aa23.95■■□□□ 1.42
LMO3-223ENST00000540590 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
LMO3-223ENST00000540590 UNC13AQ9UPW8 1703 aa23.52■■□□□ 1.36
LMO3-223ENST00000540590 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
LMO3-223ENST00000540590 BICRAQ9NZM4 1560 aa23.24■■□□□ 1.31
LMO3-223ENST00000540590 FOXD1Q16676 465 aa23.23■■□□□ 1.31
LMO3-223ENST00000540590 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
LMO3-223ENST00000540590 CECR2Q9BXF3 1484 aa22.75■■□□□ 1.23
LMO3-223ENST00000540590 BAZ1AQ9NRL2 1556 aaPredicted RBP22.64■■□□□ 1.22
LMO3-223ENST00000540590 SMARCA4P51532 1647 aa22.61■■□□□ 1.21
LMO3-223ENST00000540590 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
LMO3-223ENST00000540590 EIF4G1Q04637 1599 aaKnown RBP22.55■■□□□ 1.2
LMO3-223ENST00000540590 RSF1Q96T23 1441 aaPredicted RBP22.52■■□□□ 1.2
LMO3-223ENST00000540590 SUPT5HO00267 1087 aaKnown RBP22.41■■□□□ 1.18
LMO3-223ENST00000540590 WIZO95785 1651 aa22.41■■□□□ 1.18
LMO3-223ENST00000540590 PEG3Q9GZU2 1588 aa22.36■■□□□ 1.17
LMO3-223ENST00000540590 CC2D2AQ9P2K1 1620 aa22.31■■□□□ 1.16
LMO3-223ENST00000540590 SMARCA2P51531 1590 aa22.29■■□□□ 1.16
LMO3-223ENST00000540590 ATAD2BQ9ULI0 1458 aa22.29■■□□□ 1.16
LMO3-223ENST00000540590 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
LMO3-223ENST00000540590 NCAPD3P42695 1498 aa22.17■■□□□ 1.14
LMO3-223ENST00000540590 HMGXB3Q12766 1538 aa22.15■■□□□ 1.14
LMO3-223ENST00000540590 BAZ1BQ9UIG0 1483 aaKnown RBP22.15■■□□□ 1.14
LMO3-223ENST00000540590 DNAJC5BQ9UF47 199 aa22.03■■□□□ 1.12
LMO3-223ENST00000540590 POTEDQ86YR6 584 aa21.99■■□□□ 1.11
LMO3-223ENST00000540590 MSH5O43196 834 aa21.97■■□□□ 1.11
LMO3-223ENST00000540590 CCDC88BA6NC98 1476 aa21.89■■□□□ 1.09
LMO3-223ENST00000540590 PLPPR3Q6T4P5 718 aa21.7■■□□□ 1.06
LMO3-223ENST00000540590 PIAS4Q8N2W9 510 aaPredicted RBP21.69■■□□□ 1.06
LMO3-223ENST00000540590 CFTRP13569 1480 aa21.57■■□□□ 1.04
LMO3-223ENST00000540590 PRDM2Q13029 1718 aa21.56■■□□□ 1.04
LMO3-223ENST00000540590 CADPSQ9ULU8 1353 aa21.55■■□□□ 1.04
LMO3-223ENST00000540590 LAMC3Q9Y6N6 1575 aa21.52■■□□□ 1.04
LMO3-223ENST00000540590 NESP48681 1621 aa21.51■■□□□ 1.03
LMO3-223ENST00000540590 PPP6R1Q9UPN7 881 aa21.41■■□□□ 1.02
LMO3-223ENST00000540590 ADRA2BP18089 450 aa21.35■■□□□ 1.01
LMO3-223ENST00000540590 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
LMO3-223ENST00000540590 ABCC8Q09428 1581 aa21.32■■□□□ 1
LMO3-223ENST00000540590 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
LMO3-223ENST00000540590 PDS5BQ9NTI5 1447 aa21.31■■□□□ 1
LMO3-223ENST00000540590 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
LMO3-223ENST00000540590 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
LMO3-223ENST00000540590 SYNJ1O43426 1573 aa21.18■□□□□ 0.98
LMO3-223ENST00000540590 BIVM-ERCC5R4GMW8 1640 aa21.15■□□□□ 0.98
LMO3-223ENST00000540590 CUX1P39880 1505 aa21.15■□□□□ 0.98
LMO3-223ENST00000540590 ERCC6Q03468 1493 aa21.14■□□□□ 0.98
LMO3-223ENST00000540590 TOP2BQ02880 1626 aa21.13■□□□□ 0.97
LMO3-223ENST00000540590 DNMBPQ6XZF7 1577 aa21.1■□□□□ 0.97
LMO3-223ENST00000540590 URB2Q14146 1524 aaKnown RBP21.1■□□□□ 0.97
LMO3-223ENST00000540590 TRIM41Q8WV44 630 aa21.1■□□□□ 0.97
LMO3-223ENST00000540590 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.97
LMO3-223ENST00000540590 TOPBP1Q92547 1522 aa21.08■□□□□ 0.96
LMO3-223ENST00000540590 THOC2Q8NI27 1593 aaKnown RBP21.06■□□□□ 0.96
LMO3-223ENST00000540590 WDR62O43379 1518 aa21.01■□□□□ 0.95
LMO3-223ENST00000540590 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
LMO3-223ENST00000540590 POLA1P09884 1462 aaPredicted RBP20.93■□□□□ 0.94
LMO3-223ENST00000540590 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
LMO3-223ENST00000540590 CUX2O14529 1486 aa20.83■□□□□ 0.93
LMO3-223ENST00000540590 WDR97A6NE52 1622 aa20.83■□□□□ 0.93
LMO3-223ENST00000540590 SOGA1O94964 1423 aa20.83■□□□□ 0.93
LMO3-223ENST00000540590 TARBP1Q13395 1621 aaKnown RBP20.82■□□□□ 0.92
LMO3-223ENST00000540590 ABCA10Q8WWZ4 1543 aa20.78■□□□□ 0.92
LMO3-223ENST00000540590 RUSC2Q8N2Y8 1516 aa20.77■□□□□ 0.92
LMO3-223ENST00000540590 IFT140Q96RY7 1462 aa20.76■□□□□ 0.91
LMO3-223ENST00000540590 EEA1Q15075 1411 aa20.74■□□□□ 0.91
LMO3-223ENST00000540590 KIF27Q86VH2 1401 aa20.7■□□□□ 0.9
LMO3-223ENST00000540590 FAM9AQ8IZU1 332 aaPredicted RBP20.7■□□□□ 0.9
LMO3-223ENST00000540590 ABCA5Q8WWZ7 1642 aa20.69■□□□□ 0.9
LMO3-223ENST00000540590 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
LMO3-223ENST00000540590 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.9
LMO3-223ENST00000540590 EIF4G3O43432 1585 aaKnown RBP20.62■□□□□ 0.89
LMO3-223ENST00000540590 PBRM1Q86U86 1689 aa20.61■□□□□ 0.89
LMO3-223ENST00000540590 GAPVD1Q14C86 1478 aa20.61■□□□□ 0.89
LMO3-223ENST00000540590 AQRO60306 1485 aaKnown RBP eCLIP20.59■□□□□ 0.89
LMO3-223ENST00000540590 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
LMO3-223ENST00000540590 ERICH3Q5RHP9 1530 aa20.55■□□□□ 0.88
LMO3-223ENST00000540590 IGF1RP08069 1367 aa20.55■□□□□ 0.88
LMO3-223ENST00000540590 GRIN2BQ13224 1484 aa20.52■□□□□ 0.88
LMO3-223ENST00000540590 CUL7Q14999 1698 aa20.51■□□□□ 0.87
LMO3-223ENST00000540590 KIF21BO75037 1637 aa20.51■□□□□ 0.87
LMO3-223ENST00000540590 PRXQ9BXM0 1461 aa20.48■□□□□ 0.87
LMO3-223ENST00000540590 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
LMO3-223ENST00000540590 CARMIL1Q5VZK9 1371 aa20.44■□□□□ 0.86
LMO3-223ENST00000540590 SNAPC4Q5SXM2 1469 aa20.43■□□□□ 0.86
LMO3-223ENST00000540590 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
LMO3-223ENST00000540590 LOC105371045A0A1W2PR82 267 aa20.41■□□□□ 0.86
LMO3-223ENST00000540590 GOLGA3Q08378 1498 aa20.41■□□□□ 0.86
LMO3-223ENST00000540590 MAGI1Q96QZ7 1491 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms