RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 NISCHQ9Y2I1 1504 aa17.73■□□□□ 0.43
LMO3-220ENST00000539232 ABCC9O60706 1549 aa16.57■□□□□ 0.24
LMO3-220ENST00000539232 DNAJC5BQ9UF47 199 aa16.27■□□□□ 0.2
LMO3-220ENST00000539232 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.13
LMO3-220ENST00000539232 DNAJC5Q9H3Z4 198 aa15.6■□□□□ 0.09
LMO3-220ENST00000539232 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.07
LMO3-220ENST00000539232 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
LMO3-220ENST00000539232 NACADO15069 1562 aa15.16■□□□□ 0.02
LMO3-220ENST00000539232 UNC13AQ9UPW8 1703 aa15.09■□□□□ 0.01
LMO3-220ENST00000539232 CECR2Q9BXF3 1484 aa15.03■□□□□ -0
LMO3-220ENST00000539232 BICRAQ9NZM4 1560 aa15.02□□□□□ -0.01
LMO3-220ENST00000539232 DCAF8L2P0C7V8 631 aa15□□□□□ -0.01
LMO3-220ENST00000539232 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
LMO3-220ENST00000539232 SHROOM4Q9ULL8 1493 aa14.79□□□□□ -0.04
LMO3-220ENST00000539232 ZCCHC6Q5VYS8 1495 aaKnown RBP14.74□□□□□ -0.05
LMO3-220ENST00000539232 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
LMO3-220ENST00000539232 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
LMO3-220ENST00000539232 CUX2O14529 1486 aa14.68□□□□□ -0.06
LMO3-220ENST00000539232 DCAF1Q9Y4B6 1507 aa14.56□□□□□ -0.08
LMO3-220ENST00000539232 TRIM41Q8WV44 630 aa14.52□□□□□ -0.09
LMO3-220ENST00000539232 SCRIBQ14160 1630 aa14.41□□□□□ -0.1
LMO3-220ENST00000539232 ERCC6Q03468 1493 aa14.39□□□□□ -0.11
LMO3-220ENST00000539232 THOC2Q8NI27 1593 aaKnown RBP14.05□□□□□ -0.16
LMO3-220ENST00000539232 NCAPD3P42695 1498 aa14□□□□□ -0.17
LMO3-220ENST00000539232 NESP48681 1621 aa13.99□□□□□ -0.17
LMO3-220ENST00000539232 AEBP2Q6ZN18 517 aaPredicted RBP13.91□□□□□ -0.18
LMO3-220ENST00000539232 SMARCA2P51531 1590 aa13.87□□□□□ -0.19
LMO3-220ENST00000539232 OSCARQ8IYS5 282 aa13.86□□□□□ -0.19
LMO3-220ENST00000539232 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
LMO3-220ENST00000539232 HMGXB3Q12766 1538 aa13.82□□□□□ -0.2
LMO3-220ENST00000539232 LAMC3Q9Y6N6 1575 aa13.82□□□□□ -0.2
LMO3-220ENST00000539232 ATAD2BQ9ULI0 1458 aa13.81□□□□□ -0.2
LMO3-220ENST00000539232 KIF21AQ7Z4S6 1674 aa13.81□□□□□ -0.2
LMO3-220ENST00000539232 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
LMO3-220ENST00000539232 RIMBP3CA6NJZ7 1639 aa13.75□□□□□ -0.21
LMO3-220ENST00000539232 RIMBP3BA6NNM3 1639 aa13.75□□□□□ -0.21
LMO3-220ENST00000539232 RIMBP3Q9UFD9 1639 aa13.75□□□□□ -0.21
LMO3-220ENST00000539232 MROH2BQ7Z745 1585 aa13.73□□□□□ -0.21
LMO3-220ENST00000539232 SMARCA4P51532 1647 aa13.71□□□□□ -0.22
LMO3-220ENST00000539232 MRC2Q9UBG0 1479 aa13.68□□□□□ -0.22
LMO3-220ENST00000539232 TRHP20396 242 aaPredicted RBP13.68□□□□□ -0.22
LMO3-220ENST00000539232 WDR62O43379 1518 aa13.68□□□□□ -0.22
LMO3-220ENST00000539232 BAZ1BQ9UIG0 1483 aaKnown RBP13.64□□□□□ -0.23
LMO3-220ENST00000539232 ARHGEF11O15085 1522 aa13.62□□□□□ -0.23
LMO3-220ENST00000539232 RSF1Q96T23 1441 aaPredicted RBP13.56□□□□□ -0.24
LMO3-220ENST00000539232 CYB5RLQ6IPT4 315 aa13.56□□□□□ -0.24
LMO3-220ENST00000539232 PEG3Q9GZU2 1588 aa13.56□□□□□ -0.24
LMO3-220ENST00000539232 CADPSQ9ULU8 1353 aa13.52□□□□□ -0.25
LMO3-220ENST00000539232 WIZO95785 1651 aa13.49□□□□□ -0.25
LMO3-220ENST00000539232 CEP164Q9UPV0 1460 aa13.46□□□□□ -0.25
LMO3-220ENST00000539232 ILDR1Q86SU0 546 aaPredicted RBP13.45□□□□□ -0.26
LMO3-220ENST00000539232 ARAP1Q96P48 1450 aa13.42□□□□□ -0.26
LMO3-220ENST00000539232 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
LMO3-220ENST00000539232 TOP2AP11388 1531 aaKnown RBP13.32□□□□□ -0.28
LMO3-220ENST00000539232 URB2Q14146 1524 aaKnown RBP13.29□□□□□ -0.28
LMO3-220ENST00000539232 CCDC88BA6NC98 1476 aa13.27□□□□□ -0.29
LMO3-220ENST00000539232 ZNF608Q9ULD9 1512 aaPredicted RBP13.25□□□□□ -0.29
LMO3-220ENST00000539232 CFTRP13569 1480 aa13.24□□□□□ -0.29
LMO3-220ENST00000539232 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
LMO3-220ENST00000539232 CHD1O14646 1710 aa13.22□□□□□ -0.29
LMO3-220ENST00000539232 SUPT5HO00267 1087 aaKnown RBP13.22□□□□□ -0.29
LMO3-220ENST00000539232 EIF4G3O43432 1585 aaKnown RBP13.15□□□□□ -0.3
LMO3-220ENST00000539232 FBLN2P98095 1184 aa13.11□□□□□ -0.31
LMO3-220ENST00000539232 CLASP1Q7Z460 1538 aa13.05□□□□□ -0.32
LMO3-220ENST00000539232 AQRO60306 1485 aaKnown RBP eCLIP13.04□□□□□ -0.32
LMO3-220ENST00000539232 TOPBP1Q92547 1522 aa13.02□□□□□ -0.33
LMO3-220ENST00000539232 PRDM2Q13029 1718 aa13.02□□□□□ -0.33
LMO3-220ENST00000539232 KDM4FA0A1W2PPD8 638 aa13□□□□□ -0.33
LMO3-220ENST00000539232 SYNJ1O43426 1573 aa12.98□□□□□ -0.33
LMO3-220ENST00000539232 ABCC8Q09428 1581 aa12.98□□□□□ -0.33
LMO3-220ENST00000539232 GAPVD1Q14C86 1478 aa12.97□□□□□ -0.33
LMO3-220ENST00000539232 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
LMO3-220ENST00000539232 KIF13AQ9H1H9 1805 aa12.92□□□□□ -0.34
LMO3-220ENST00000539232 DNMBPQ6XZF7 1577 aa12.9□□□□□ -0.34
LMO3-220ENST00000539232 CHMP7Q8WUX9 453 aaPredicted RBP12.9□□□□□ -0.34
LMO3-220ENST00000539232 RAD54L2Q9Y4B4 1467 aa12.89□□□□□ -0.35
LMO3-220ENST00000539232 ERCC6L2Q5T890 1561 aa12.89□□□□□ -0.35
LMO3-220ENST00000539232 SNAPC4Q5SXM2 1469 aa12.88□□□□□ -0.35
LMO3-220ENST00000539232 CUX1P39880 1505 aa12.87□□□□□ -0.35
LMO3-220ENST00000539232 POLA1P09884 1462 aaPredicted RBP12.86□□□□□ -0.35
LMO3-220ENST00000539232 FBXO41Q8TF61 875 aa12.86□□□□□ -0.35
LMO3-220ENST00000539232 TDRD9Q8NDG6 1382 aaKnown RBP12.85□□□□□ -0.35
LMO3-220ENST00000539232 MAGI1Q96QZ7 1491 aaPredicted RBP12.85□□□□□ -0.35
LMO3-220ENST00000539232 SOGA1O94964 1423 aa12.83□□□□□ -0.36
LMO3-220ENST00000539232 WDR97A6NE52 1622 aa12.82□□□□□ -0.36
LMO3-220ENST00000539232 FGD5Q6ZNL6 1462 aa12.82□□□□□ -0.36
LMO3-220ENST00000539232 SYNJ2O15056 1496 aa12.8□□□□□ -0.36
LMO3-220ENST00000539232 HECW2Q9P2P5 1572 aa12.8□□□□□ -0.36
LMO3-220ENST00000539232 KDM6BO15054 1643 aa12.78□□□□□ -0.36
LMO3-220ENST00000539232 LMTK3Q96Q04 1460 aa12.76□□□□□ -0.37
LMO3-220ENST00000539232 GRIN2BQ13224 1484 aa12.75□□□□□ -0.37
LMO3-220ENST00000539232 ABCC10Q5T3U5 1492 aa12.74□□□□□ -0.37
LMO3-220ENST00000539232 FAM69CQ0P6D2 419 aa12.74□□□□□ -0.37
LMO3-220ENST00000539232 WRNQ14191 1432 aaPredicted RBP eCLIP12.73□□□□□ -0.37
LMO3-220ENST00000539232 ADGRL1O94910 1474 aa12.71□□□□□ -0.38
LMO3-220ENST00000539232 SOCS7O14512 581 aa12.69□□□□□ -0.38
LMO3-220ENST00000539232 CEP170Q5SW79 1584 aa12.68□□□□□ -0.38
LMO3-220ENST00000539232 DIP2BQ9P265 1576 aa12.66□□□□□ -0.38
LMO3-220ENST00000539232 ABCA10Q8WWZ4 1543 aa12.65□□□□□ -0.38
LMO3-220ENST00000539232 MAPKBP1O60336 1514 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms