RNA–Protein interactions for RNA: ENST00000538363.1

TNFRSF1A-211, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-211ENST00000538363 NISCHQ9Y2I1 1504 aa24.49■■□□□ 1.51
TNFRSF1A-211ENST00000538363 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
TNFRSF1A-211ENST00000538363 CHIC1Q5VXU3 224 aa23.28■■□□□ 1.32
TNFRSF1A-211ENST00000538363 CCDC180Q9P1Z9 1646 aa21.73■■□□□ 1.07
TNFRSF1A-211ENST00000538363 ABCC9O60706 1549 aa20.96■□□□□ 0.95
TNFRSF1A-211ENST00000538363 DCAF8L2P0C7V8 631 aa20.56■□□□□ 0.88
TNFRSF1A-211ENST00000538363 ZCCHC6Q5VYS8 1495 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-211ENST00000538363 PHF23Q9BUL5 403 aaPredicted RBP20.45■□□□□ 0.86
TNFRSF1A-211ENST00000538363 SENP3Q9H4L4 574 aaPredicted RBP20.44■□□□□ 0.86
TNFRSF1A-211ENST00000538363 NACADO15069 1562 aa20.25■□□□□ 0.83
TNFRSF1A-211ENST00000538363 RB1CC1Q8TDY2 1594 aa20.25■□□□□ 0.83
TNFRSF1A-211ENST00000538363 DCAF1Q9Y4B6 1507 aa20.21■□□□□ 0.83
TNFRSF1A-211ENST00000538363 MYO15BQ96JP2 1530 aa20.15■□□□□ 0.82
TNFRSF1A-211ENST00000538363 UNC13AQ9UPW8 1703 aa19.99■□□□□ 0.79
TNFRSF1A-211ENST00000538363 SCRIBQ14160 1630 aa19.93■□□□□ 0.78
TNFRSF1A-211ENST00000538363 SHROOM4Q9ULL8 1493 aa19.82■□□□□ 0.76
TNFRSF1A-211ENST00000538363 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
TNFRSF1A-211ENST00000538363 PABPN1Q86U42 306 aaKnown RBP eCLIP19.56■□□□□ 0.72
TNFRSF1A-211ENST00000538363 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
TNFRSF1A-211ENST00000538363 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
TNFRSF1A-211ENST00000538363 DNAJC5BQ9UF47 199 aa19.03■□□□□ 0.64
TNFRSF1A-211ENST00000538363 SMARCA4P51532 1647 aa19.03■□□□□ 0.64
TNFRSF1A-211ENST00000538363 SUPT5HO00267 1087 aaKnown RBP19■□□□□ 0.63
TNFRSF1A-211ENST00000538363 FOXD1Q16676 465 aa18.99■□□□□ 0.63
TNFRSF1A-211ENST00000538363 CC2D2AQ9P2K1 1620 aa18.99■□□□□ 0.63
TNFRSF1A-211ENST00000538363 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
TNFRSF1A-211ENST00000538363 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
TNFRSF1A-211ENST00000538363 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
TNFRSF1A-211ENST00000538363 WIZO95785 1651 aa18.82■□□□□ 0.6
TNFRSF1A-211ENST00000538363 RSF1Q96T23 1441 aaPredicted RBP18.78■□□□□ 0.6
TNFRSF1A-211ENST00000538363 SMARCA2P51531 1590 aa18.76■□□□□ 0.59
TNFRSF1A-211ENST00000538363 PEG3Q9GZU2 1588 aa18.75■□□□□ 0.59
TNFRSF1A-211ENST00000538363 ATAD2BQ9ULI0 1458 aa18.74■□□□□ 0.59
TNFRSF1A-211ENST00000538363 HMGXB3Q12766 1538 aa18.66■□□□□ 0.58
TNFRSF1A-211ENST00000538363 BAZ1BQ9UIG0 1483 aaKnown RBP18.65■□□□□ 0.58
TNFRSF1A-211ENST00000538363 NCAPD3P42695 1498 aa18.62■□□□□ 0.57
TNFRSF1A-211ENST00000538363 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
TNFRSF1A-211ENST00000538363 CCDC88BA6NC98 1476 aa18.29■□□□□ 0.52
TNFRSF1A-211ENST00000538363 NESP48681 1621 aa18.24■□□□□ 0.51
TNFRSF1A-211ENST00000538363 PRDM2Q13029 1718 aa18.21■□□□□ 0.51
TNFRSF1A-211ENST00000538363 LAMC3Q9Y6N6 1575 aa18.18■□□□□ 0.5
TNFRSF1A-211ENST00000538363 KIF21AQ7Z4S6 1674 aa18.14■□□□□ 0.49
TNFRSF1A-211ENST00000538363 ADRA2BP18089 450 aa18.11■□□□□ 0.49
TNFRSF1A-211ENST00000538363 PPP6R1Q9UPN7 881 aa18.11■□□□□ 0.49
TNFRSF1A-211ENST00000538363 CADPSQ9ULU8 1353 aa18.09■□□□□ 0.49
TNFRSF1A-211ENST00000538363 CFTRP13569 1480 aa18.08■□□□□ 0.49
TNFRSF1A-211ENST00000538363 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
TNFRSF1A-211ENST00000538363 FANCD2Q9BXW9 1451 aa17.98■□□□□ 0.47
TNFRSF1A-211ENST00000538363 PDS5BQ9NTI5 1447 aa17.95■□□□□ 0.46
TNFRSF1A-211ENST00000538363 THOC2Q8NI27 1593 aaKnown RBP17.95■□□□□ 0.46
TNFRSF1A-211ENST00000538363 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
TNFRSF1A-211ENST00000538363 PIAS4Q8N2W9 510 aaPredicted RBP17.9■□□□□ 0.46
TNFRSF1A-211ENST00000538363 TRIM41Q8WV44 630 aa17.89■□□□□ 0.45
TNFRSF1A-211ENST00000538363 ABCC8Q09428 1581 aa17.86■□□□□ 0.45
TNFRSF1A-211ENST00000538363 MRC2Q9UBG0 1479 aa17.85■□□□□ 0.45
TNFRSF1A-211ENST00000538363 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
TNFRSF1A-211ENST00000538363 WDR62O43379 1518 aa17.81■□□□□ 0.44
TNFRSF1A-211ENST00000538363 DNMBPQ6XZF7 1577 aa17.78■□□□□ 0.44
TNFRSF1A-211ENST00000538363 WRNQ14191 1432 aaPredicted RBP eCLIP17.77■□□□□ 0.44
TNFRSF1A-211ENST00000538363 SYNJ1O43426 1573 aa17.75■□□□□ 0.43
TNFRSF1A-211ENST00000538363 CUX1P39880 1505 aa17.75■□□□□ 0.43
TNFRSF1A-211ENST00000538363 TOPBP1Q92547 1522 aa17.75■□□□□ 0.43
TNFRSF1A-211ENST00000538363 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
TNFRSF1A-211ENST00000538363 TOP2BQ02880 1626 aa17.68■□□□□ 0.42
TNFRSF1A-211ENST00000538363 CUX2O14529 1486 aa17.65■□□□□ 0.42
TNFRSF1A-211ENST00000538363 FGD5Q6ZNL6 1462 aa17.64■□□□□ 0.41
TNFRSF1A-211ENST00000538363 POLA1P09884 1462 aaPredicted RBP17.62■□□□□ 0.41
TNFRSF1A-211ENST00000538363 MSH5O43196 834 aa17.6■□□□□ 0.41
TNFRSF1A-211ENST00000538363 WDR97A6NE52 1622 aa17.59■□□□□ 0.41
TNFRSF1A-211ENST00000538363 FAM9AQ8IZU1 332 aaPredicted RBP17.57■□□□□ 0.4
TNFRSF1A-211ENST00000538363 TARBP1Q13395 1621 aaKnown RBP17.56■□□□□ 0.4
TNFRSF1A-211ENST00000538363 RAD54L2Q9Y4B4 1467 aa17.56■□□□□ 0.4
TNFRSF1A-211ENST00000538363 DNAJC5Q9H3Z4 198 aa17.55■□□□□ 0.4
TNFRSF1A-211ENST00000538363 EIF4G3O43432 1585 aaKnown RBP17.51■□□□□ 0.39
TNFRSF1A-211ENST00000538363 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
TNFRSF1A-211ENST00000538363 SOGA1O94964 1423 aa17.48■□□□□ 0.39
TNFRSF1A-211ENST00000538363 ZNF608Q9ULD9 1512 aaPredicted RBP17.47■□□□□ 0.39
TNFRSF1A-211ENST00000538363 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
TNFRSF1A-211ENST00000538363 ABCA5Q8WWZ7 1642 aa17.43■□□□□ 0.38
TNFRSF1A-211ENST00000538363 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
TNFRSF1A-211ENST00000538363 KIF27Q86VH2 1401 aa17.39■□□□□ 0.38
TNFRSF1A-211ENST00000538363 EEA1Q15075 1411 aa17.38■□□□□ 0.37
TNFRSF1A-211ENST00000538363 EHMT2Q96KQ7 1210 aa17.38■□□□□ 0.37
TNFRSF1A-211ENST00000538363 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
TNFRSF1A-211ENST00000538363 TDRD9Q8NDG6 1382 aaKnown RBP17.37■□□□□ 0.37
TNFRSF1A-211ENST00000538363 AQRO60306 1485 aaKnown RBP eCLIP17.37■□□□□ 0.371e-6■■■■■ 40.2
TNFRSF1A-211ENST00000538363 RUSC2Q8N2Y8 1516 aa17.32■□□□□ 0.36
TNFRSF1A-211ENST00000538363 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
TNFRSF1A-211ENST00000538363 CHD1O14646 1710 aa17.28■□□□□ 0.36
TNFRSF1A-211ENST00000538363 SNAPC4Q5SXM2 1469 aa17.28■□□□□ 0.36
TNFRSF1A-211ENST00000538363 ADAMTS12P58397 1594 aa17.27■□□□□ 0.35
TNFRSF1A-211ENST00000538363 GRIN2BQ13224 1484 aa17.25■□□□□ 0.35
TNFRSF1A-211ENST00000538363 LOC105371045A0A1W2PR82 267 aa17.24■□□□□ 0.35
TNFRSF1A-211ENST00000538363 UBTFP17480 764 aaKnown RBP17.24■□□□□ 0.35
TNFRSF1A-211ENST00000538363 ERICH3Q5RHP9 1530 aa17.21■□□□□ 0.35
TNFRSF1A-211ENST00000538363 CUL7Q14999 1698 aa17.2■□□□□ 0.34
TNFRSF1A-211ENST00000538363 MAGI1Q96QZ7 1491 aaPredicted RBP17.19■□□□□ 0.34
TNFRSF1A-211ENST00000538363 IGF1RP08069 1367 aa17.18■□□□□ 0.34
TNFRSF1A-211ENST00000538363 CARMIL1Q5VZK9 1371 aa17.16■□□□□ 0.34
TNFRSF1A-211ENST00000538363 FBLN2P98095 1184 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms