RNA–Protein interactions for RNA: ENST00000538253.5

PTPN22-211, Transcript of protein tyrosine phosphatase, non-receptor type 22, humanhuman

TSL 1 (best) BASIC

Gene PTPN22, Length 3,575 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22-211ENST00000538253 NISCHQ9Y2I1 1504 aa8.17□□□□□ -1.1
PTPN22-211ENST00000538253 POTEDQ86YR6 584 aa7.96□□□□□ -1.14
PTPN22-211ENST00000538253 AEBP2Q6ZN18 517 aaPredicted RBP7.38□□□□□ -1.23
PTPN22-211ENST00000538253 CCDC180Q9P1Z9 1646 aa7.3□□□□□ -1.24
PTPN22-211ENST00000538253 CHIC1Q5VXU3 224 aa6.96□□□□□ -1.3
PTPN22-211ENST00000538253 ABCC9O60706 1549 aa6.94□□□□□ -1.3
PTPN22-211ENST00000538253 MYO15BQ96JP2 1530 aa6.92□□□□□ -1.3
PTPN22-211ENST00000538253 NACADO15069 1562 aa6.89□□□□□ -1.31
PTPN22-211ENST00000538253 DCAF1Q9Y4B6 1507 aa6.88□□□□□ -1.31
PTPN22-211ENST00000538253 RB1CC1Q8TDY2 1594 aa6.87□□□□□ -1.31
PTPN22-211ENST00000538253 ZCCHC6Q5VYS8 1495 aaKnown RBP6.81□□□□□ -1.32
PTPN22-211ENST00000538253 DCAF8L2P0C7V8 631 aa6.79□□□□□ -1.32
PTPN22-211ENST00000538253 SHROOM4Q9ULL8 1493 aa6.74□□□□□ -1.33
PTPN22-211ENST00000538253 SCRIBQ14160 1630 aa6.51□□□□□ -1.37
PTPN22-211ENST00000538253 PABPN1Q86U42 306 aaKnown RBP eCLIP6.47□□□□□ -1.37
PTPN22-211ENST00000538253 MSH5O43196 834 aa6.46□□□□□ -1.38
PTPN22-211ENST00000538253 SENP3Q9H4L4 574 aaPredicted RBP6.45□□□□□ -1.38
PTPN22-211ENST00000538253 BICRAQ9NZM4 1560 aa6.44□□□□□ -1.38
PTPN22-211ENST00000538253 BAZ1AQ9NRL2 1556 aaPredicted RBP6.4□□□□□ -1.38
PTPN22-211ENST00000538253 UNC13AQ9UPW8 1703 aa6.4□□□□□ -1.38
PTPN22-211ENST00000538253 SMARCA2P51531 1590 aa6.38□□□□□ -1.39
PTPN22-211ENST00000538253 EIF4G1Q04637 1599 aaKnown RBP6.36□□□□□ -1.39
PTPN22-211ENST00000538253 NCAPD3P42695 1498 aa6.32□□□□□ -1.4
PTPN22-211ENST00000538253 CECR2Q9BXF3 1484 aa6.31□□□□□ -1.4
PTPN22-211ENST00000538253 HMGXB3Q12766 1538 aa6.3□□□□□ -1.4
PTPN22-211ENST00000538253 SMARCA4P51532 1647 aa6.29□□□□□ -1.4
PTPN22-211ENST00000538253 BAZ1BQ9UIG0 1483 aaKnown RBP6.28□□□□□ -1.4
PTPN22-211ENST00000538253 PEG3Q9GZU2 1588 aa6.28□□□□□ -1.4
PTPN22-211ENST00000538253 CC2D2AQ9P2K1 1620 aa6.28□□□□□ -1.4
PTPN22-211ENST00000538253 ATAD2BQ9ULI0 1458 aa6.27□□□□□ -1.41
PTPN22-211ENST00000538253 RSF1Q96T23 1441 aaPredicted RBP6.21□□□□□ -1.41
PTPN22-211ENST00000538253 TOP2AP11388 1531 aaKnown RBP6.2□□□□□ -1.42
PTPN22-211ENST00000538253 DNAJC5Q9H3Z4 198 aa6.19□□□□□ -1.42
PTPN22-211ENST00000538253 MROH2BQ7Z745 1585 aa6.19□□□□□ -1.42
PTPN22-211ENST00000538253 PDS5BQ9NTI5 1447 aa6.19□□□□□ -1.42
PTPN22-211ENST00000538253 LAMC3Q9Y6N6 1575 aa6.15□□□□□ -1.42
PTPN22-211ENST00000538253 DNAJC5BQ9UF47 199 aa6.15□□□□□ -1.42
PTPN22-211ENST00000538253 CADPSQ9ULU8 1353 aa6.14□□□□□ -1.43
PTPN22-211ENST00000538253 PHF23Q9BUL5 403 aaPredicted RBP6.13□□□□□ -1.43
PTPN22-211ENST00000538253 ABCC8Q09428 1581 aa6.13□□□□□ -1.43
PTPN22-211ENST00000538253 ERCC6Q03468 1493 aa6.13□□□□□ -1.43
PTPN22-211ENST00000538253 SUPT5HO00267 1087 aaKnown RBP6.1□□□□□ -1.43
PTPN22-211ENST00000538253 WIZO95785 1651 aa6.08□□□□□ -1.44
PTPN22-211ENST00000538253 CFTRP13569 1480 aa6.08□□□□□ -1.44
PTPN22-211ENST00000538253 CUX2O14529 1486 aa6.08□□□□□ -1.44
PTPN22-211ENST00000538253 CEP164Q9UPV0 1460 aa6.07□□□□□ -1.44
PTPN22-211ENST00000538253 CCDC88BA6NC98 1476 aa6.05□□□□□ -1.44
PTPN22-211ENST00000538253 MRC2Q9UBG0 1479 aa6.05□□□□□ -1.44
PTPN22-211ENST00000538253 FANCD2Q9BXW9 1451 aa6.03□□□□□ -1.44
PTPN22-211ENST00000538253 POTEHQ6S545 545 aa6.02□□□□□ -1.45
PTPN22-211ENST00000538253 SLC24A1O60721 1099 aa6□□□□□ -1.45
PTPN22-211ENST00000538253 PRDM2Q13029 1718 aa5.98□□□□□ -1.45
PTPN22-211ENST00000538253 WDR97A6NE52 1622 aa5.98□□□□□ -1.45
PTPN22-211ENST00000538253 IFT140Q96RY7 1462 aa5.97□□□□□ -1.45
PTPN22-211ENST00000538253 FAM9AQ8IZU1 332 aaPredicted RBP5.97□□□□□ -1.45
PTPN22-211ENST00000538253 WDR62O43379 1518 aa5.96□□□□□ -1.45
PTPN22-211ENST00000538253 DNMBPQ6XZF7 1577 aa5.96□□□□□ -1.46
PTPN22-211ENST00000538253 WRNQ14191 1432 aaPredicted RBP eCLIP5.95□□□□□ -1.46
PTPN22-211ENST00000538253 NESP48681 1621 aa5.94□□□□□ -1.46
PTPN22-211ENST00000538253 PELP1Q8IZL8 1130 aaKnown RBP5.94□□□□□ -1.46
PTPN22-211ENST00000538253 TOPBP1Q92547 1522 aa5.92□□□□□ -1.46
PTPN22-211ENST00000538253 MYT1Q01538 1121 aa5.91□□□□□ -1.46
PTPN22-211ENST00000538253 EEA1Q15075 1411 aa5.91□□□□□ -1.46
PTPN22-211ENST00000538253 THOC2Q8NI27 1593 aaKnown RBP5.91□□□□□ -1.46
PTPN22-211ENST00000538253 SOGA1O94964 1423 aa5.9□□□□□ -1.46
PTPN22-211ENST00000538253 CACNB1Q02641 598 aaPredicted RBP5.88□□□□□ -1.47
PTPN22-211ENST00000538253 KIF27Q86VH2 1401 aa5.88□□□□□ -1.47
PTPN22-211ENST00000538253 TRIM41Q8WV44 630 aa5.88□□□□□ -1.47
PTPN22-211ENST00000538253 KIF21AQ7Z4S6 1674 aa5.88□□□□□ -1.47
PTPN22-211ENST00000538253 URB2Q14146 1524 aaKnown RBP5.88□□□□□ -1.47
PTPN22-211ENST00000538253 GRIN2BQ13224 1484 aa5.87□□□□□ -1.47
PTPN22-211ENST00000538253 TOP2BQ02880 1626 aa5.87□□□□□ -1.47
PTPN22-211ENST00000538253 ABCA10Q8WWZ4 1543 aa5.86□□□□□ -1.47
PTPN22-211ENST00000538253 FGD5Q6ZNL6 1462 aa5.86□□□□□ -1.47
PTPN22-211ENST00000538253 MAGI1Q96QZ7 1491 aaPredicted RBP5.86□□□□□ -1.47
PTPN22-211ENST00000538253 POLA1P09884 1462 aaPredicted RBP5.85□□□□□ -1.47
PTPN22-211ENST00000538253 BIVM-ERCC5R4GMW8 1640 aa5.85□□□□□ -1.47
PTPN22-211ENST00000538253 FOXD1Q16676 465 aa5.83□□□□□ -1.48
PTPN22-211ENST00000538253 OSCARQ8IYS5 282 aa5.83□□□□□ -1.48
PTPN22-211ENST00000538253 CHMP7Q8WUX9 453 aaPredicted RBP5.83□□□□□ -1.48
PTPN22-211ENST00000538253 GAPVD1Q14C86 1478 aa5.83□□□□□ -1.48
PTPN22-211ENST00000538253 CUX1P39880 1505 aa5.83□□□□□ -1.48
PTPN22-211ENST00000538253 ERICH3Q5RHP9 1530 aa5.82□□□□□ -1.48
PTPN22-211ENST00000538253 FHAD1B1AJZ9 1412 aa5.82□□□□□ -1.48
PTPN22-211ENST00000538253 PRKCSHP14314 528 aaPredicted RBP5.82□□□□□ -1.48
PTPN22-211ENST00000538253 SYNJ2O15056 1496 aa5.8□□□□□ -1.48
PTPN22-211ENST00000538253 SYNJ1O43426 1573 aa5.79□□□□□ -1.48
PTPN22-211ENST00000538253 CUL7Q14999 1698 aa5.78□□□□□ -1.48
PTPN22-211ENST00000538253 TARBP1Q13395 1621 aaKnown RBP5.78□□□□□ -1.48
PTPN22-211ENST00000538253 TTBK1Q5TCY1 1321 aaPredicted RBP5.78□□□□□ -1.48
PTPN22-211ENST00000538253 TDRD9Q8NDG6 1382 aaKnown RBP5.77□□□□□ -1.49
PTPN22-211ENST00000538253 FBLN2P98095 1184 aa5.76□□□□□ -1.49
PTPN22-211ENST00000538253 CSRNP3Q8WYN3 585 aa5.76□□□□□ -1.49
PTPN22-211ENST00000538253 RAD54L2Q9Y4B4 1467 aa5.76□□□□□ -1.49
PTPN22-211ENST00000538253 CARMIL1Q5VZK9 1371 aa5.76□□□□□ -1.49
PTPN22-211ENST00000538253 EIF4G3O43432 1585 aaKnown RBP5.76□□□□□ -1.49
PTPN22-211ENST00000538253 CARMIL2Q6F5E8 1435 aa5.76□□□□□ -1.49
PTPN22-211ENST00000538253 SNAPC4Q5SXM2 1469 aa5.75□□□□□ -1.49
PTPN22-211ENST00000538253 ABCA5Q8WWZ7 1642 aa5.75□□□□□ -1.49
PTPN22-211ENST00000538253 AQRO60306 1485 aaKnown RBP eCLIP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms